AT2G27070
MYB Family

two-component response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0023714
Physical Location & Seq
Reverse (-)
11556392 .. 11560215
3824 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27070.1

Sequence Viewer

Length: 1719 bp
ATGGCTTTTGCTCAATCTGTCTACAACCAAAGCTCTGTCTTGAAAATCAATGTCATGGTTGTGGACGATAATCGTGTTTTCCTTGATATTTGGTCACGCATGCTTGAAAAGTCCAAATACAGAGAGATCACGGTTATAGCTGTAGACTATCCGAAGAAAGCATTATCTACTCTAAAAAATCAACGAGATAATATAGATCTTATAATCACAGATTATTACATGCCTGGCATGAACGGTCTACAACTCAAAAAACAAATCACTCAAGAATTTGGAAATTTATCAGTCTTAGTTATGTCATCGGACCCAAACAAAGAAGAAGAGAGTTTAAGTTGTGGAGCAATGGGTTTCATTCCAAAACCCATAGCACCAACTGACTTACCAAAGATTTACCAGTTTGCTTTAACCTACAAGAGGAACGGTAAATCAACATTATCGACCGAGCAAAACCAAAAGGACGCAAATGTTAGTGTCCCTCAGCAAATCATGTTGGTTCCTGAGCAAGCTTACGTTTTAAAGACCAAGAAGAAGAACTGCTCATCTAAATCAGATACAAGAACCGTGAACAGTACAAATGTAAGTCATGTTAGTACGAATGGTTCAAGAAAAAATCGGAAACGAAAACCCAAAGGTGGTCCTAGTGATGATGGCGAGTCTCTGTCGCAACCCCCCAAGAAGAAAAAGATTTGGTGGACGAATCCTCTTCAAGACCTATTCTTACAGGCTATCCAACATATCGGTTATGATAAGGTGGTGCCCAAAAAGATCCTCGCGATCATGAACGTACCATACTTGACAAGAGAGAACGTAGCCAGCCATTTACAGAAATATCGGTTATTCGTGAAGAGAGTCGTGCATCAAGGTAGGTTTAGCATGCTGTCAGATAGAGGCAAAGACTCGATGTTTCGACAAACTCACATTAAGGAGCCGTACGTCAACTATTACACACCATCTACTTCTTGGTATGAGACAAGTCTTAACAATAGATCATTCTATTCCGAATCCGTACATGGACACTCTAGACTCTTGTCCGAAGCACGTGAGCCCGTCCGCTACAACCAAATGTCTTACAACTACATGAACCGCAACATCAGTTTCGAAAACCAACCATCTCAAAACGAAGAAACAAGAACCGTTTTCGAGCCACCCGTGATGGCGAACAAAATCAGCCAAACATCTCAAGTTCTTGGGTTTGGACAACTTGGACCGTCAGCTATCAGTGGTCATAATTTCAATACTAACATGATGAGCAGCTATGGAAGTTTGACTCCGAATCAACCGGGAACTAGCCACTTCTCCTATGGGATGCAATCGGTCTTAAACAATGAGAACGCAACATATAACCCTCAGCCACCTGCCAATGCAACTACACAGCCAAATCTTGATGAACTTCCTCAACTGGAGAATCTCAACTTATACAATGATCTCGGCAACACTAGTGAGCTTCCTTACAACATAAGTAACTTTCAATCCGATGACAACAAGAAACAAGGAGAAGAAGATGGTGACTGGACCTTCGTGAACATAAACCAGGATCAATCTAATGGAGAATCATCGAACACTATTGCTACTCCGGAGACTAATACTCCAAATTTCAACATTAACCCTAATCAGAATCAGGGACAAGCTGTTCCAGAGTTTACCGATTGGTCGTTTTTGGATCAGCAGGAATTGGTTGATGACGACTTCATGAACTCTCTGTTCAACAATGACATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

572

Amino Acids

65.04

Weight (kDa)

6.78

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 18 - 129 1e-20 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023714)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27070 AT5G07210 AT5G07210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AarI CACCTGC 1 cut(s) 1360
Acc36I ACCTGC 1 cut(s) 1360
AccB1I GGYRCC 1 cut(s) 751
AccI GTMKAC 3 cut(s) 21, 144, 238
AccII CGCG 1 cut(s) 770
AccIII TCCGGA 1 cut(s) 1570
AciI CCGC 2 cut(s) 1048, 1081
AclWI GGATC 3 cut(s) 757, 1539, 1665
AcsI RAATTY 3 cut(s) 266, 274, 1588
AcvI CACGTG 1 cut(s) 1037
AfaI GTAC 5 cut(s) 568, 589, 783, 929, 1005
AfiI CCNNNNNNNGG 2 cut(s) 411, 629
AgsI TTSAA 8 cut(s) 43, 107, 600, 704, 1231, 1466, 1594, 1702
AhlI ACTAGT 1 cut(s) 1433
AjnI CCWGG 2 cut(s) 223, 1527
AloI GAACNNNNNNTCC 2 cut(s) 1611, 1643
AluBI AGCT 7 cut(s) 33, 140, 503, 1211, 1251, 1441, 1625
AluI AGCT 7 cut(s) 33, 140, 503, 1211, 1251, 1441, 1625
Alw26I GTCTC 3 cut(s) 657, 959, 1568
AlwI GGATC 3 cut(s) 757, 1539, 1665
Aor13HI TCCGGA 1 cut(s) 1570
ApeKI GCWGC 1 cut(s) 1248
ApoI RAATTY 3 cut(s) 266, 274, 1588
ArsI GACNNNNNNTTYG 2 cut(s) 1496, 1528
AspS9I GGNCC 4 cut(s) 301, 632, 1202, 1509
AsuC2I CCSGG 1 cut(s) 1278
AsuHPI GGTGA 1 cut(s) 1514
AsuII TTCGAA 1 cut(s) 1095
AvaII GGWCC 4 cut(s) 301, 632, 1202, 1509
BaeGI GKGCMC 1 cut(s) 756
BanI GGYRCC 1 cut(s) 751
BanII GRGCYC 1 cut(s) 1044
BbrPI CACGTG 1 cut(s) 1037
BbvCI CCTCAGC 2 cut(s) 474, 1344
BbvI GCAGC 1 cut(s) 1260
BccI CCATC 5 cut(s) 638, 955, 1114, 1144, 1493
BceAI ACGGC 1 cut(s) 910
BciT130I CCWGG 2 cut(s) 225, 1529
BcnI CCSGG 1 cut(s) 1278
BcoDI GTCTC 3 cut(s) 657, 959, 1568
BcuI ACTAGT 1 cut(s) 1433
BfaI CTAG 4 cut(s) 636, 1017, 1284, 1434
BfmI CTRYAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 1360
BglII AGATCT 1 cut(s) 196
BisI GCNGC 1 cut(s) 1249
BlsI GCNGC 1 cut(s) 1250
Bme1390I CCNGG 3 cut(s) 225, 1278, 1529
Bme18I GGWCC 4 cut(s) 301, 632, 1202, 1509
BmgT120I GGNCC 4 cut(s) 301, 632, 1202, 1509
BmiI GGNNCC 4 cut(s) 303, 492, 753, 924
BmrFI CCNGG 3 cut(s) 225, 1278, 1529
BmsI GCATC 2 cut(s) 862, 1293
BoxI GACNNNNGTC 1 cut(s) 1024
BpmI CTGGAG 1 cut(s) 1418
Bpu10I CCTNAGC 3 cut(s) 474, 495, 1344
Bpu14I TTCGAA 1 cut(s) 1095
BpuEI CTTGAG 2 cut(s) 246, 1161
BpuMI CCSGG 1 cut(s) 1278
BsaAI YACGTR 1 cut(s) 1037
BsaWI WCCGGW 1 cut(s) 1570
BsaXI ACNNNNNCTCC 2 cut(s) 1567, 1597
Bsc4I CCNNNNNNNGG 2 cut(s) 411, 629
Bse1I ACTGG 3 cut(s) 391, 1401, 1511
Bse3DI GCAATG 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 1570
BseBI CCWGG 2 cut(s) 225, 1529
BseGI GGATG 1 cut(s) 1308
BseLI CCNNNNNNNGG 2 cut(s) 411, 629
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 3 cut(s) 486, 488, 1358
BseNI ACTGG 3 cut(s) 391, 1401, 1511
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 1 cut(s) 1260
Bsh1236I CGCG 1 cut(s) 770
Bsh1285I CGRYCG 1 cut(s) 438
BshNI GGYRCC 1 cut(s) 751
BsiEI CGRYCG 1 cut(s) 438
BsiSI CCGG 2 cut(s) 1277, 1571
BsiWI CGTACG 1 cut(s) 927
BslFI GGGAC 2 cut(s) 455, 1632
BslI CCNNNNNNNGG 2 cut(s) 411, 629
BsmAI GTCTC 3 cut(s) 657, 959, 1568
BsmFI GGGAC 2 cut(s) 455, 1632
Bsp119I TTCGAA 1 cut(s) 1095
Bsp1286I GDGCHC 2 cut(s) 756, 1044
Bsp13I TCCGGA 1 cut(s) 1570
Bsp143I GATC 8 cut(s) 126, 196, 762, 771, 983, 1420, 1531, 1657
Bsp68I TCGCGA 1 cut(s) 770
BspACI CCGC 2 cut(s) 1048, 1081
BspCNI CTCAG 3 cut(s) 487, 487, 1357
BspEI TCCGGA 1 cut(s) 1570
BspFNI CGCG 1 cut(s) 770
BspHI TCATGA 2 cut(s) 774, 1686
BspLI GGNNCC 4 cut(s) 303, 492, 753, 924
BspMI ACCTGC 1 cut(s) 1360
BspPI GGATC 3 cut(s) 757, 1539, 1665
BspT104I TTCGAA 1 cut(s) 1095
BspT107I GGYRCC 1 cut(s) 751
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 3 cut(s) 391, 1401, 1511
BssMI GATC 8 cut(s) 126, 196, 762, 771, 983, 1420, 1531, 1657
Bst2UI CCWGG 2 cut(s) 225, 1529
Bst4CI ACNGT 7 cut(s) 133, 236, 419, 559, 566, 1132, 1206
Bst6I CTCTTC 3 cut(s) 312, 705, 836
BstBAI YACGTR 1 cut(s) 1037
BstBI TTCGAA 1 cut(s) 1095
BstC8I GCNNGC 4 cut(s) 101, 501, 811, 872
BstDEI CTNAG 4 cut(s) 286, 474, 495, 1344
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 1 cut(s) 1308
BstFNI CGCG 1 cut(s) 770
BstKTI GATC 8 cut(s) 129, 199, 765, 774, 986, 1423, 1534, 1660
BstMAI GTCTC 3 cut(s) 657, 959, 1568
BstMBI GATC 8 cut(s) 126, 196, 762, 771, 983, 1420, 1531, 1657
BstMCI CGRYCG 1 cut(s) 438
BstNI CCWGG 2 cut(s) 225, 1529
BstNSI RCATGY 3 cut(s) 103, 223, 874
BstPAI GACNNNNGTC 1 cut(s) 1024
BstSCI CCNGG 3 cut(s) 223, 1276, 1527
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 756
BstUI CGCG 1 cut(s) 770
BstV1I GCAGC 1 cut(s) 1260
BstX2I RGATCY 2 cut(s) 196, 762
BstYI RGATCY 2 cut(s) 196, 762
BtsCI GGATG 1 cut(s) 1308
BtsIMutI CAGTG 1 cut(s) 1222
BtuMI TCGCGA 1 cut(s) 770
BveI ACCTGC 1 cut(s) 1360
Cac8I GCNNGC 4 cut(s) 101, 501, 811, 872
CciI TCATGA 2 cut(s) 774, 1686
Cfr13I GGNCC 4 cut(s) 301, 632, 1202, 1509
CseI GACGC 1 cut(s) 464
Csp6I GTAC 5 cut(s) 567, 588, 782, 928, 1004
CviQI GTAC 5 cut(s) 567, 588, 782, 928, 1004
DdeI CTNAG 4 cut(s) 286, 474, 495, 1344
DpnI GATC 8 cut(s) 128, 198, 764, 773, 985, 1422, 1533, 1659
DpnII GATC 8 cut(s) 126, 196, 762, 771, 983, 1420, 1531, 1657
DraI TTTAAA 1 cut(s) 513
Eam1104I CTCTTC 3 cut(s) 312, 705, 836
EarI CTCTTC 3 cut(s) 312, 705, 836
Eco24I GRGCYC 1 cut(s) 1044
Eco47I GGWCC 4 cut(s) 301, 632, 1202, 1509
Eco72I CACGTG 1 cut(s) 1037
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoRII CCWGG 2 cut(s) 223, 1527
EcoT38I GRGCYC 1 cut(s) 1044
FaqI GGGAC 2 cut(s) 455, 1632
FblI GTMKAC 3 cut(s) 21, 144, 238
Fnu4HI GCNGC 1 cut(s) 1249
FokI GGATG 1 cut(s) 1315
FriOI GRGCYC 1 cut(s) 1044
Fsp4HI GCNGC 1 cut(s) 1249
FspBI CTAG 4 cut(s) 636, 1017, 1284, 1434
GluI GCNGC 1 cut(s) 1249
GsuI CTGGAG 1 cut(s) 1418
HapII CCGG 2 cut(s) 1277, 1571
HgaI GACGC 1 cut(s) 464
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HindIII AAGCTT 1 cut(s) 501
HpaII CCGG 2 cut(s) 1277, 1571
HphI GGTGA 1 cut(s) 1514
Hpy166II GTNNAC 9 cut(s) 22, 64, 145, 239, 562, 690, 934, 1519, 1638
Hpy8I GTNNAC 9 cut(s) 22, 64, 145, 239, 562, 690, 934, 1519, 1638
HpyAV CCTTC 1 cut(s) 1522
HpyCH4III ACNGT 7 cut(s) 133, 236, 419, 559, 566, 1132, 1206
HpyCH4IV ACGT 5 cut(s) 507, 780, 804, 930, 1036
HpyCH4V TGCA 3 cut(s) 853, 1306, 1361
HpyF3I CTNAG 4 cut(s) 286, 474, 495, 1344
HpySE526I ACGT 5 cut(s) 507, 780, 804, 930, 1036
Kpn2I TCCGGA 1 cut(s) 1570
Kzo9I GATC 8 cut(s) 126, 196, 762, 771, 983, 1420, 1531, 1657
LmnI GCTCC 2 cut(s) 335, 922
Lsp1109I GCAGC 1 cut(s) 1260
LweI GCATC 2 cut(s) 862, 1293
MaeI CTAG 4 cut(s) 636, 1017, 1284, 1434
MaeII ACGT 5 cut(s) 507, 780, 804, 930, 1036
MaeIII GTNAC 3 cut(s) 93, 1457, 1502
MalI GATC 8 cut(s) 128, 198, 764, 773, 985, 1422, 1533, 1659
MboI GATC 8 cut(s) 126, 196, 762, 771, 983, 1420, 1531, 1657
MflI RGATCY 2 cut(s) 196, 762
MhlI GDGCHC 2 cut(s) 756, 1044
MluCI AATT 6 cut(s) 266, 274, 1225, 1588, 1667, 1714
MlyI GAGTC 5 cut(s) 659, 855, 887, 1014, 1258
MmeI TCCRAC 1 cut(s) 751
MnlI CCTC 7 cut(s) 405, 483, 708, 776, 878, 1353, 1401
MroI TCCGGA 1 cut(s) 1570
MseI TTAA 7 cut(s) 326, 401, 512, 918, 975, 1316, 1599
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 2 cut(s) 1277, 1571
MspR9I CCNGG 3 cut(s) 225, 1278, 1529
MvaI CCWGG 2 cut(s) 225, 1529
MvnI CGCG 1 cut(s) 770
NciI CCSGG 1 cut(s) 1278
NdeII GATC 8 cut(s) 126, 196, 762, 771, 983, 1420, 1531, 1657
NlaIV GGNNCC 4 cut(s) 303, 492, 753, 924
NmeAIII GCCGAG 1 cut(s) 1404
NmuCI GTSAC 2 cut(s) 93, 1502
NruI TCGCGA 1 cut(s) 770
NspI RCATGY 3 cut(s) 103, 223, 874
NspV TTCGAA 1 cut(s) 1095
PaeI GCATGC 2 cut(s) 103, 874
PagI TCATGA 2 cut(s) 774, 1686
PaqCI CACCTGC 1 cut(s) 1360
PcsI WCGNNNNNNNCGW 1 cut(s) 1143
PfeI GAWTC 6 cut(s) 694, 998, 1270, 1402, 1547, 1612
Pfl23II CGTACG 1 cut(s) 927
PkrI GCNGC 1 cut(s) 1250
PleI GAGTC 5 cut(s) 658, 854, 887, 1014, 1258
PmaCI CACGTG 1 cut(s) 1037
PmlI CACGTG 1 cut(s) 1037
PpsI GAGTC 5 cut(s) 658, 854, 887, 1014, 1258
Ppu21I YACGTR 1 cut(s) 1037
PshAI GACNNNNGTC 1 cut(s) 1024
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 2 cut(s) 223, 1527
PspCI CACGTG 1 cut(s) 1037
PspGI CCWGG 2 cut(s) 223, 1527
PspLI CGTACG 1 cut(s) 927
PspN4I GGNNCC 4 cut(s) 303, 492, 753, 924
PspPI GGNCC 4 cut(s) 301, 632, 1202, 1509
PsrI GAACNNNNNNTAC 4 cut(s) 580, 612, 770, 802
PsuI RGATCY 2 cut(s) 196, 762
RruI TCGCGA 1 cut(s) 770
RsaI GTAC 5 cut(s) 568, 589, 783, 929, 1005
RsaNI GTAC 5 cut(s) 567, 588, 782, 928, 1004
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 7 cut(s) 326, 401, 512, 918, 975, 1316, 1599
SatI GCNGC 1 cut(s) 1249
Sau3AI GATC 8 cut(s) 126, 196, 762, 771, 983, 1420, 1531, 1657
Sau96I GGNCC 4 cut(s) 301, 632, 1202, 1509
SchI GAGTC 5 cut(s) 659, 855, 887, 1014, 1258
ScrFI CCNGG 3 cut(s) 225, 1278, 1529
SduI GDGCHC 2 cut(s) 756, 1044
SfaNI GCATC 2 cut(s) 862, 1293
SfcI CTRYAG 1 cut(s) 141
SfuI TTCGAA 1 cut(s) 1095
SinI GGWCC 4 cut(s) 301, 632, 1202, 1509
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 261, 1176
SmoI CTYRAG 2 cut(s) 261, 1176
SpeI ACTAGT 1 cut(s) 1433
SphI GCATGC 2 cut(s) 103, 874
Sse9I AATT 6 cut(s) 266, 274, 1225, 1588, 1667, 1714
SsiI CCGC 2 cut(s) 1048, 1081
SspMI CTAG 4 cut(s) 636, 1017, 1284, 1434
StyD4I CCNGG 3 cut(s) 223, 1276, 1527
TaaI ACNGT 7 cut(s) 133, 236, 419, 559, 566, 1132, 1206
TaiI ACGT 5 cut(s) 510, 783, 807, 933, 1039
TaqI TCGA 6 cut(s) 434, 896, 904, 1095, 1137, 1553
TaqII GACCGA 2 cut(s) 452, 1300
TasI AATT 6 cut(s) 266, 274, 1225, 1588, 1667, 1714
TatI WGTACW 1 cut(s) 566
TfiI GAWTC 6 cut(s) 694, 998, 1270, 1402, 1547, 1612
Tru1I TTAA 7 cut(s) 326, 401, 512, 918, 975, 1316, 1599
Tru9I TTAA 7 cut(s) 326, 401, 512, 918, 975, 1316, 1599
TscAI CASTG 1 cut(s) 1222
TseFI GTSAC 2 cut(s) 93, 1502
TseI GCWGC 1 cut(s) 1248
Tsp45I GTSAC 2 cut(s) 93, 1502
TspDTI ATGAA 7 cut(s) 245, 337, 791, 1091, 1398, 1675, 1703
TspGWI ACGGA 1 cut(s) 991
TspRI CASTG 1 cut(s) 1222
VpaK11BI GGWCC 4 cut(s) 301, 632, 1202, 1509
XagI CCTNNNNNAGG 1 cut(s) 409
XapI RAATTY 3 cut(s) 266, 274, 1588
XbaI TCTAGA 1 cut(s) 1016
XceI RCATGY 3 cut(s) 103, 223, 874
XcmI CCANNNNNNNNNTGG 2 cut(s) 954, 1295
XmiI GTMKAC 3 cut(s) 21, 144, 238
XspI CTAG 4 cut(s) 636, 1017, 1284, 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.