Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023850

Physical Location & Seq

Genomic Coordinates Forward (+)

13168533 .. 13170285

Gene Structure 1753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGCAGGAGTGGCTAGAGATTTTACTGATTCACACTCTTATTGATTCATCATCTTTATCACCACAAAGACTCAGAGTAATGAATAGAATCATATCATCACAAGGATCAGATTTGATCAAACAAAAACTCTCTCAACACACTTCCTTCTTCGGCATCAAGCTATGGATCCTCATCACAGCTTCTGCCTCCATAGCCTTCCTCTTAGTTCTGATAATTTCTGTCCTCCTCTGTTTCATATTTCACAGGAGAAGATGTAGCCAAGAACCATTCAGACTAAGATCAAAGCTTTGTCTACCTTTATCACACATTCCCTTAACTAACAAACAACAGATTCCTTATAACCGTTGCGGCGACGATATAGAGAGCCAGAGAATCTCTCAGGTTGGTTGGTCCTCTGCTCGTCTTTCCTACTACACACGCAGCTTCTCCTCTACCGGCAGCTTTGGAAGCTTCAATGTGTTTACGTTCATGGAGATCAAGAACGTGACAGATAGTTTTGCAGATGATAATGTGATTACTAAAGGAGATTCTTCAACGGTGTATCGCGGAATCTTGATGGGTACAGTCACTGTTGCTGTCAAACGATTCCTTCCAAGTAATAGCAGGTATGAAGATAAAGATTTCATTACAAAAGCTGAGATGATTGCAAATGTTAGACACAAGAATGTTGTGAGACTCCTTGGATACTGCATAGAAGGAGATGAGAGGGTTCTTGTATATGAATACGCTGAGAAAGGCGATTTGCACGAATGGCTTCATGGATCTGCAGGAAGAAATCGGCCTCTGACTTGGAGAAAGAGGATGAAGATCATTCAAGGAGTAGCAAAAGGCCTTGCGTATATTCACGAGGACATCGAACCAAAGATCACTCATCAAGACATAAGACCAAGCAAGATTCTTCTTGATTATCAATGGAACCCTAAGATACTTGATGTTGGATTCATTGGTCACAGTGATATTCCAACTTTGATTCCTTCACCTGGTAATATGGATGAGAAAATCGACGTTTATTCCTTTGGGAATATGATAATGGAGCTTGTCTCTGGGAGAGTCTCTGTAGACCAAAGTTCACCACATGTTTATCTAGTGGACTGGATCAAAGAGATGGTGGCAAATCATATGATAGTAGATGTTCTTGATCCTAGTCTTCCCGAATTTCCTACAATAAAGGAACTCAAACGGATTGTGTTGATTTCCCTGCGTTGTGTTGATCCCGAGCTAAAAGAGAGACCTAAAATGGGAGATGTGATTCACATGCTCCAACCACATGACTTGCTGCTGAATAACAATGCAATACAGAAGGCTCAGAAGATTACCCGGTCACATGAGGTTTCTGCAATAAGTATCAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

451

Amino Acids

51.57

Weight (kDa)

8.96

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	169 - 405	3.2e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	170 - 314	7.2e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30940 AT2G30940 AT2G30940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	594
AccI	GTMKAC	2 cut(s)	292, 1059
AccII	CGCG	1 cut(s)	546
AciI	CCGC	2 cut(s)	348, 546
AclWI	GGATC	7 cut(s)	112, 160, 173, 769, 1103, 1133, 1205
AcsI	RAATTY	1 cut(s)	1154
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	2 cut(s)	980, 1238
AflIII	ACRYGT	1 cut(s)	1075
AgsI	TTSAA	3 cut(s)	454, 534, 815
AjnI	CCWGG	1 cut(s)	979
AluBI	AGCT	9 cut(s)	160, 179, 286, 423, 441, 450, 635, 1036, 1219
AluI	AGCT	9 cut(s)	160, 179, 286, 423, 441, 450, 635, 1036, 1219
Alw26I	GTCTC	4 cut(s)	667, 1045, 1057, 1222
AlwI	GGATC	7 cut(s)	112, 160, 173, 769, 1103, 1133, 1205
AlwNI	CAGNNNCTG	2 cut(s)	182, 569
Ama87I	CYCGRG	1 cut(s)	1214
AoxI	GGCC	2 cut(s)	779, 829
ApeKI	GCWGC	3 cut(s)	420, 438, 1276
ApoI	RAATTY	1 cut(s)	1154
Asp700I	GAANNNNTTC	1 cut(s)	753
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	1 cut(s)	1318
AsuHPI	GGTGA	3 cut(s)	51, 969, 1062
AvaI	CYCGRG	1 cut(s)	1214
AvaII	GGWCC	1 cut(s)	390
BamHI	GGATCC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	1139
BbvI	GCAGC	3 cut(s)	432, 450, 1263
BccI	CCATC	2 cut(s)	550, 1099
BciT130I	CCWGG	1 cut(s)	981
BciVI	GTATCC	1 cut(s)	677
BclI	TGATCA	1 cut(s)	114
BcnI	CCSGG	1 cut(s)	1318
BcoDI	GTCTC	4 cut(s)	667, 1045, 1057, 1222
BfaI	CTAG	3 cut(s)	14, 1085, 1143
BfmI	CTRYAG	2 cut(s)	765, 1056
BfuAI	ACCTGC	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	677
BisI	GCNGC	4 cut(s)	349, 421, 439, 1277
BlsI	GCNGC	4 cut(s)	350, 422, 440, 1278
Bme1390I	CCNGG	2 cut(s)	981, 1318
Bme18I	GGWCC	1 cut(s)	390
BmeT110I	CYCGRG	1 cut(s)	1214
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	2 cut(s)	167, 917
BmrFI	CCNGG	2 cut(s)	981, 1318
BmsI	GCATC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	1139
BplI	GAGNNNNNCTC	4 cut(s)	361, 393, 1025, 1057
BpuMI	CCSGG	1 cut(s)	1318
BsaBI	GATNNNNATC	2 cut(s)	170, 806
BsaI	GGTCTC	1 cut(s)	1222
BsaJI	CCNNGG	1 cut(s)	679
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	980, 1238
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	1097
Bse8I	GATNNNNATC	2 cut(s)	170, 806
BseBI	CCWGG	1 cut(s)	981
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	2 cut(s)	807, 997
BseJI	GATNNNNATC	2 cut(s)	170, 806
BseLI	CCNNNNNNNGG	2 cut(s)	980, 1238
BseMII	CTCAG	5 cut(s)	85, 392, 627, 720, 1319
BseNI	ACTGG	1 cut(s)	1097
BseRI	GAGGAG	2 cut(s)	215, 418
BseXI	GCAGC	3 cut(s)	432, 450, 1263
Bsh1236I	CGCG	1 cut(s)	546
BshFI	GGCC	2 cut(s)	781, 831
BsiHKCI	CYCGRG	1 cut(s)	1214
BsiSI	CCGG	2 cut(s)	435, 1318
BslI	CCNNNNNNNGG	2 cut(s)	980, 1238
BsmAI	GTCTC	4 cut(s)	667, 1045, 1057, 1222
BsnI	GGCC	2 cut(s)	781, 831
Bso31I	GGTCTC	1 cut(s)	1222
BsoBI	CYCGRG	1 cut(s)	1214
BspACI	CCGC	2 cut(s)	348, 546
BspANI	GGCC	2 cut(s)	781, 831
BspCNI	CTCAG	5 cut(s)	84, 391, 628, 721, 1318
BspFNI	CGCG	1 cut(s)	546
BspLI	GGNNCC	2 cut(s)	167, 917
BspMAI	CTGCAG	1 cut(s)	769
BspMI	ACCTGC	1 cut(s)	594
BspPI	GGATC	7 cut(s)	112, 160, 173, 769, 1103, 1133, 1205
BspTNI	GGTCTC	1 cut(s)	1222
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	1097
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	679
BssSI	CACGAG	1 cut(s)	845
BssT1I	CCWWGG	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	845
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	5 cut(s)	344, 538, 565, 571, 953
BstDEI	CTNAG	8 cut(s)	71, 202, 275, 378, 636, 729, 921, 1305
BstF5I	GGATG	2 cut(s)	807, 997
BstFNI	CGCG	1 cut(s)	546
BstMAI	GTCTC	4 cut(s)	667, 1045, 1057, 1222
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 191, 447, 751
BstNI	CCWGG	1 cut(s)	981
BstNSI	RCATGY	2 cut(s)	1079, 1258
BstSCI	CCNGG	2 cut(s)	979, 1316
BstSFI	CTRYAG	2 cut(s)	765, 1056
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	3 cut(s)	432, 450, 1263
BstV2I	GAAGAC	1 cut(s)	1139
BstX2I	RGATCY	2 cut(s)	165, 761
BstYI	RGATCY	2 cut(s)	165, 761
BsuI	GTATCC	1 cut(s)	677
BsuRI	GGCC	2 cut(s)	781, 831
BtsCI	GGATG	2 cut(s)	807, 997
BtsIMutI	CAGTG	2 cut(s)	567, 958
BveI	ACCTGC	1 cut(s)	594
CaiI	CAGNNNCTG	2 cut(s)	182, 569
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	390
CsiI	ACCWGGT	1 cut(s)	979
Csp6I	GTAC	1 cut(s)	561
CspCI	CAANNNNNGTGG	2 cut(s)	1254, 1289
CviAII	CATG	6 cut(s)	469, 758, 1076, 1255, 1268, 1325
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	8 cut(s)	71, 202, 275, 378, 636, 729, 921, 1305
Eco130I	CCWWGG	1 cut(s)	679
Eco147I	AGGCCT	1 cut(s)	831
Eco31I	GGTCTC	1 cut(s)	1222
Eco47I	GGWCC	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	1214
EcoRII	CCWGG	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	679
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	6 cut(s)	472, 761, 1079, 1258, 1271, 1328
FatI	CATG	6 cut(s)	468, 757, 1075, 1254, 1267, 1324
FauNDI	CATATG	1 cut(s)	1119
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	2 cut(s)	292, 1059
Fnu4HI	GCNGC	4 cut(s)	349, 421, 439, 1277
FokI	GGATG	2 cut(s)	814, 1004
Fsp4HI	GCNGC	4 cut(s)	349, 421, 439, 1277
FspBI	CTAG	3 cut(s)	14, 1085, 1143
GluI	GCNGC	4 cut(s)	349, 421, 439, 1277
HaeIII	GGCC	2 cut(s)	781, 831
HapII	CCGG	2 cut(s)	435, 1318
Hin1II	CATG	6 cut(s)	472, 761, 1079, 1258, 1271, 1328
HindIII	AAGCTT	2 cut(s)	284, 448
HpaII	CCGG	2 cut(s)	435, 1318
HphI	GGTGA	3 cut(s)	51, 969, 1062
Hpy166II	GTNNAC	5 cut(s)	293, 462, 1060, 1070, 1090
Hpy188I	TCNGA	7 cut(s)	74, 109, 210, 272, 786, 1308, 1349
Hpy188III	TCNNGA	8 cut(s)	478, 553, 845, 875, 902, 1136, 1151, 1214
Hpy8I	GTNNAC	5 cut(s)	293, 462, 1060, 1070, 1090
Hpy99I	CGWCG	2 cut(s)	356, 1007
HpyAV	CCTTC	6 cut(s)	154, 205, 599, 689, 984, 1294
HpyCH4III	ACNGT	5 cut(s)	344, 538, 565, 571, 953
HpyCH4IV	ACGT	3 cut(s)	464, 483, 1005
HpyCH4V	TGCA	8 cut(s)	4, 500, 647, 690, 745, 767, 1292, 1337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 191, 447, 751
HpyF3I	CTNAG	8 cut(s)	71, 202, 275, 378, 636, 729, 921, 1305
HpySE526I	ACGT	3 cut(s)	464, 483, 1005
Hsp92II	CATG	6 cut(s)	472, 761, 1079, 1258, 1271, 1328
Ksp22I	TGATCA	1 cut(s)	114
LmnI	GCTCC	2 cut(s)	1033, 1263
Lsp1109I	GCAGC	3 cut(s)	432, 450, 1263
LweI	GCATC	1 cut(s)	162
MabI	ACCWGGT	1 cut(s)	979
MaeI	CTAG	3 cut(s)	14, 1085, 1143
MaeII	ACGT	3 cut(s)	464, 483, 1005
MaeIII	GTNAC	4 cut(s)	484, 565, 947, 1320
MboII	GAAGA	9 cut(s)	139, 261, 522, 623, 783, 817, 890, 1139, 1321
MflI	RGATCY	2 cut(s)	165, 761
MluCI	AATT	2 cut(s)	213, 1154
MlyI	GAGTC	3 cut(s)	63, 669, 1059
MmeI	TCCRAC	3 cut(s)	916, 986, 1285
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	663
MspI	CCGG	2 cut(s)	435, 1318
MspR9I	CCNGG	2 cut(s)	981, 1318
MvaI	CCWGG	1 cut(s)	981
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	4 cut(s)	10, 191, 447, 751
NciI	CCSGG	1 cut(s)	1318
NdeI	CATATG	1 cut(s)	1119
NlaIII	CATG	6 cut(s)	472, 761, 1079, 1258, 1271, 1328
NlaIV	GGNNCC	2 cut(s)	167, 917
NmuCI	GTSAC	4 cut(s)	484, 565, 947, 1320
NspI	RCATGY	2 cut(s)	1079, 1258
PceI	AGGCCT	1 cut(s)	831
PciI	ACATGT	1 cut(s)	1075
PcsI	WCGNNNNNNNCGW	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	753
PkrI	GCNGC	4 cut(s)	350, 422, 440, 1278
PleI	GAGTC	3 cut(s)	63, 669, 1058
PpsI	GAGTC	3 cut(s)	63, 669, 1058
PscI	ACATGT	1 cut(s)	1075
PsiI	TTATAA	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	979
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	2 cut(s)	167, 917
PspPI	GGNCC	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	769
PstNI	CAGNNNCTG	2 cut(s)	182, 569
PsuI	RGATCY	2 cut(s)	165, 761
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	4 cut(s)	349, 421, 439, 1277
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	3 cut(s)	63, 669, 1059
ScrFI	CCNGG	2 cut(s)	981, 1318
SexAI	ACCWGGT	1 cut(s)	979
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	2 cut(s)	765, 1056
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	663
Sse9I	AATT	2 cut(s)	213, 1154
SseBI	AGGCCT	1 cut(s)	831
SsiI	CCGC	2 cut(s)	348, 546
SspMI	CTAG	3 cut(s)	14, 1085, 1143
StuI	AGGCCT	1 cut(s)	831
StyD4I	CCNGG	2 cut(s)	979, 1316
StyI	CCWWGG	1 cut(s)	679
TaaI	ACNGT	5 cut(s)	344, 538, 565, 571, 953
TaiI	ACGT	3 cut(s)	467, 486, 1008
TaqI	TCGA	2 cut(s)	855, 1002
TasI	AATT	2 cut(s)	213, 1154
TauI	GCSGC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	2 cut(s)	574, 958
TseFI	GTSAC	4 cut(s)	484, 565, 947, 1320
TseI	GCWGC	3 cut(s)	420, 438, 1276
Tsp45I	GTSAC	4 cut(s)	484, 565, 947, 1320
TspGWI	ACGGA	1 cut(s)	1195
TspRI	CASTG	2 cut(s)	574, 958
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	1154
XceI	RCATGY	2 cut(s)	1079, 1258
XmiI	GTMKAC	2 cut(s)	292, 1059
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	3 cut(s)	14, 1085, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.