Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023933

Physical Location & Seq

Genomic Coordinates Forward (+)

14180978 .. 14182439

Gene Structure 1462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGAAGAGGAGCTCTATTAAAAACAGAGGAGTACTTAGATTACCACCAGGGTTCCGATTTCACCCGACCGATGAAGAGCTAGTGGTTCAATATTTACGTCGAAAAGTAACCGGTTTACCCTTACCAGCTTCTGTAATACCGGAAACCGATGTTTGTAAATCCGATCCATGGGATTTACCAGGTGATTGTGAATCAGAGATGTATTTTTTTAGCACGAGGGAAGCTAAATACCCGAACGGAAACCGGTCGAACCGGTCTACCGGTTCGGGTTATTGGAAAGCGACTGGTCTCGATAAGCAGATCGGTAAGAAGAAGCTTGTCGTGGGGATGAAGAAAACTCTTGTTTTCTACAAAGGTAAACCACCAAACGGAACAAGAACTAACTGGGTTCTTCATGAATATCGTCTTGTTGATTCACAACAAGATTCATTATATGGACAGAACATGAATTGGGTTTTGTGTAGAGTGTTCTTGAAGAAGAGAAGCAATAGTAATAGTAAGAGGAAAGAAGATGAGAAAGAAGAGGTGGAGAATGAGAAAGAGACAGAGACAGAGAGAGAACGTGAGGAGGAGAACAAGAAGAGTACTTGTCCCATATTTTATGACTTTATGAGAAAAGACACGAAGAAAAAGAGAAGGAGAAGAAGATGCTGTGATTTGAATTTGACTCCTGCTACTTGTTGTTGTTGCTCTTCTTCGACTTCTTCGTCGTCTGTTTGCTCAAGTGCTTTAACTCACACATCTTCTAATGATAATCGTCAAGAAATCAGTTATCGGGAAAATAAGTTTTGTTTGTTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

268

Amino Acids

31.12

Weight (kDa)

9.3

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 137	1.5e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0023933)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33480 AT2G33480 AT2G33480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	709
AccI	GTMKAC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	664
AfaI	GTAC	2 cut(s)	36, 589
AfiI	CCNNNNNNNGG	2 cut(s)	171, 371
AgeI	ACCGGT	4 cut(s)	113, 246, 255, 263
AgsI	TTSAA	3 cut(s)	92, 478, 664
AjnI	CCWGG	2 cut(s)	49, 181
AluBI	AGCT	5 cut(s)	15, 82, 131, 227, 319
AluI	AGCT	5 cut(s)	15, 82, 131, 227, 319
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	3 cut(s)	296, 539, 545
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	664
AsiGI	ACCGGT	4 cut(s)	113, 246, 255, 263
AsuHPI	GGTGA	2 cut(s)	56, 197
BanII	GRGCYC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	17
BciT130I	CCWGG	2 cut(s)	51, 183
BcoDI	GTCTC	3 cut(s)	296, 539, 545
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	803
BmcAI	AGTACT	2 cut(s)	36, 589
Bme1390I	CCNGG	2 cut(s)	51, 183
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	2 cut(s)	51, 183
BmrI	ACTGGG	1 cut(s)	397
BmsI	GCATC	1 cut(s)	641
BmuI	ACTGGG	1 cut(s)	397
BpuEI	CTTGAG	1 cut(s)	709
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	50, 170
BsaWI	WCCGGW	5 cut(s)	113, 142, 246, 255, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 371
Bse118I	RCCGGY	4 cut(s)	113, 246, 255, 263
Bse1I	ACTGG	2 cut(s)	292, 392
BseBI	CCWGG	2 cut(s)	51, 183
BseDI	CCNNGG	2 cut(s)	50, 170
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	171, 371
BseNI	ACTGG	2 cut(s)	292, 392
BseRI	GAGGAG	4 cut(s)	25, 45, 584, 587
Bsh1285I	CGRYCG	2 cut(s)	72, 251
BshTI	ACCGGT	4 cut(s)	113, 246, 255, 263
BsiEI	CGRYCG	2 cut(s)	72, 251
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	5 cut(s)	114, 143, 247, 256, 264
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	2 cut(s)	171, 371
BsmAI	GTCTC	3 cut(s)	296, 539, 545
BsmFI	GGGAC	1 cut(s)	579
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	166, 303
Bsp19I	CCATGG	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	161
BspQI	GCTCTTC	2 cut(s)	72, 700
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	4 cut(s)	113, 246, 255, 263
BsrI	ACTGG	2 cut(s)	292, 392
BssAI	RCCGGY	4 cut(s)	113, 246, 255, 263
BssECI	CCNNGG	2 cut(s)	50, 170
BssMI	GATC	2 cut(s)	166, 303
BssSI	CACGAG	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	170
Bst2BI	CACGAG	1 cut(s)	217
Bst2UI	CCWGG	2 cut(s)	51, 183
Bst6I	CTCTTC	6 cut(s)	2, 72, 476, 519, 578, 700
BstDEI	CTNAG	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	2 cut(s)	169, 306
BstMAI	GTCTC	3 cut(s)	296, 539, 545
BstMBI	GATC	2 cut(s)	166, 303
BstMCI	CGRYCG	2 cut(s)	72, 251
BstNI	CCWGG	2 cut(s)	51, 183
BstSCI	CCNGG	2 cut(s)	49, 181
BstSFI	CTRYAG	1 cut(s)	803
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	336
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	397
Cfr10I	RCCGGY	4 cut(s)	113, 246, 255, 263
CsiI	ACCWGGT	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	35, 588
CspAI	ACCGGT	4 cut(s)	113, 246, 255, 263
CviAII	CATG	3 cut(s)	171, 398, 448
CviJI	RGCY	5 cut(s)	15, 82, 131, 227, 319
CviKI_1	RGCY	5 cut(s)	15, 82, 131, 227, 319
CviQI	GTAC	2 cut(s)	35, 588
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	2 cut(s)	168, 305
DpnII	GATC	2 cut(s)	166, 303
DrdI	GACNNNNNNGTC	1 cut(s)	709
DseDI	GACNNNNNNGTC	1 cut(s)	709
Eam1104I	CTCTTC	6 cut(s)	2, 72, 476, 519, 578, 700
EarI	CTCTTC	6 cut(s)	2, 72, 476, 519, 578, 700
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	49, 181
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	3 cut(s)	174, 401, 451
FaiI	YATR	9 cut(s)	172, 399, 436, 438, 449, 599, 606, 614, 805
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	3 cut(s)	170, 397, 447
FblI	GTMKAC	1 cut(s)	260
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	83
HapII	CCGG	5 cut(s)	114, 143, 247, 256, 264
Hin1II	CATG	3 cut(s)	174, 401, 451
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	4 cut(s)	194, 416, 428, 670
HpaII	CCGG	5 cut(s)	114, 143, 247, 256, 264
HphI	GGTGA	2 cut(s)	56, 197
Hpy166II	GTNNAC	3 cut(s)	119, 261, 362
Hpy188I	TCNGA	3 cut(s)	59, 166, 199
Hpy188III	TCNNGA	5 cut(s)	293, 398, 475, 764, 779
Hpy8I	GTNNAC	3 cut(s)	119, 261, 362
Hpy99I	CGWCG	2 cut(s)	105, 715
HpyAV	CCTTC	1 cut(s)	633
HpyCH4IV	ACGT	2 cut(s)	100, 565
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	2 cut(s)	100, 565
Hsp92II	CATG	3 cut(s)	174, 401, 451
Kzo9I	GATC	2 cut(s)	166, 303
LguI	GCTCTTC	2 cut(s)	72, 700
LmnI	GCTCC	1 cut(s)	12
LweI	GCATC	1 cut(s)	641
MabI	ACCWGGT	1 cut(s)	181
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	2 cut(s)	100, 565
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	168, 305
MboI	GATC	2 cut(s)	166, 303
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	451, 664
MlyI	GAGTC	1 cut(s)	664
MnlI	CCTC	7 cut(s)	3, 23, 213, 498, 520, 562, 565
MseI	TTAA	2 cut(s)	21, 734
MspI	CCGG	5 cut(s)	114, 143, 247, 256, 264
MspR9I	CCNGG	2 cut(s)	51, 183
MvaI	CCWGG	2 cut(s)	51, 183
NcoI	CCATGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	166, 303
NlaIII	CATG	3 cut(s)	174, 401, 451
NlaIV	GGNNCC	1 cut(s)	56
PagI	TCATGA	1 cut(s)	397
PciSI	GCTCTTC	2 cut(s)	72, 700
PcsI	WCGNNNNNNNCGW	1 cut(s)	707
PfeI	GAWTC	3 cut(s)	194, 416, 428
PinAI	ACCGGT	4 cut(s)	113, 246, 255, 263
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	49, 181
PspGI	CCWGG	2 cut(s)	49, 181
PspN4I	GGNNCC	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	36, 589
RsaNI	GTAC	2 cut(s)	35, 588
SacI	GAGCTC	1 cut(s)	17
SapI	GCTCTTC	2 cut(s)	72, 700
SaqAI	TTAA	2 cut(s)	21, 734
Sau3AI	GATC	2 cut(s)	166, 303
ScaI	AGTACT	2 cut(s)	36, 589
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	2 cut(s)	51, 183
SduI	GDGCHC	1 cut(s)	17
SexAI	ACCWGGT	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	1 cut(s)	803
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
Sse9I	AATT	2 cut(s)	451, 664
SspI	AATATT	1 cut(s)	95
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	49, 181
StyI	CCWWGG	1 cut(s)	170
TaiI	ACGT	2 cut(s)	103, 568
TaqI	TCGA	4 cut(s)	103, 251, 294, 701
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	2 cut(s)	451, 664
TatI	WGTACW	2 cut(s)	34, 587
TfiI	GAWTC	3 cut(s)	194, 416, 428
Tru1I	TTAA	2 cut(s)	21, 734
Tru9I	TTAA	2 cut(s)	21, 734
TspDTI	ATGAA	6 cut(s)	90, 347, 386, 414, 420, 464
TspGWI	ACGGA	2 cut(s)	255, 387
XapI	RAATTY	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	1 cut(s)	83
ZrmI	AGTACT	2 cut(s)	36, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.