AT2G33710

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0027487
Physical Location & Seq
Reverse (-)
14258509 .. 14260904
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33710.2

Sequence Viewer

Length: 657 bp
ATGCATAGCGGGAAGAGACCTCTATCACCAGAATCAATGGCCGGAAATAGAGAAGAGAAAAAAGAGTTGTGTTGTTGCTCAACTTTGTCGGAATCTGATGTGTCTGATTTTGTCTCTGAACTCACTGGTCAACCCATCCCATCATCCATTGATGATCAATCTTCGTCGCTTACTCTTCAAGAAAAAAGTAACTCGAGGCAACGAAACTACAGAGGCGTGAGGCAAAGACCGTGGGGAAAATGGGCGGCTGAGATTCGTGACCCGAACAAGGCAGCTCGTGTGTGGCTTGGGACGTTCGACACTGCAGAAGAAGCCGCCTTAGCGTATGATAAAGCTGCATTTGAGTTTAGAGGTCACAAGGCCAAGCTTAACTTCCCCGAGCATATTCGTGTCAACCCTACTCAACTCTATCCATCGCCCGCTACTTCCCATGATCGCATTATCGTGACACCACCTAGTCCACCTCCACCAATTGCTCCTGACATACTTCTTGATCAATATGGCCACTTTCAATCTCGAAGTAGTGATTCCAGTGCCAACTTGTCCATGAATATGCTGTCTTCTTCGTCTTCATCTTTGAATCATCAAGGGCTAAGACCAAATTTGGAGGATGGTGAAAACGTGAAGAACATTAGTATCCACAAACGACGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

218

Amino Acids

24.3

Weight (kDa)

8.43

Isoelectric Point (pI)

70.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 69 - 119 1.4e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33710 AT2G33710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 9, 245, 315, 420
AcoI YGGCCR 2 cut(s) 39, 502
AcsI RAATTY 1 cut(s) 601
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 3 cut(s) 179, 512, 580
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 3 cut(s) 275, 335, 367
AluI AGCT 3 cut(s) 275, 335, 367
Alw26I GTCTC 2 cut(s) 10, 118
Ama87I CYCGRG 2 cut(s) 193, 377
AoxI GGCC 3 cut(s) 39, 360, 502
ApeKI GCWGC 2 cut(s) 272, 335
ApoI RAATTY 1 cut(s) 601
AsuHPI GGTGA 2 cut(s) 18, 626
AvaI CYCGRG 2 cut(s) 193, 377
BaeI ACNNNNGTAYC 2 cut(s) 619, 652
BalI TGGCCA 1 cut(s) 504
BauI CACGAG 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 552, 561
BbvI GCAGC 2 cut(s) 284, 322
BccI CCATC 4 cut(s) 143, 148, 421, 605
BciVI GTATCC 1 cut(s) 647
BclI TGATCA 2 cut(s) 154, 493
BcoDI GTCTC 2 cut(s) 10, 118
BfaI CTAG 1 cut(s) 456
BfmI CTRYAG 2 cut(s) 208, 303
BfuI GTATCC 1 cut(s) 647
BisI GCNGC 4 cut(s) 246, 273, 315, 336
BlsI GCNGC 4 cut(s) 247, 274, 316, 337
BmeT110I CYCGRG 2 cut(s) 193, 377
BpiI GAAGAC 2 cut(s) 552, 561
Bpu10I CCTNAGC 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 130, 531
BseDI CCNNGG 1 cut(s) 230
BseGI GGATG 3 cut(s) 135, 143, 616
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 130, 531
BseXI GCAGC 2 cut(s) 284, 322
BshFI GGCC 3 cut(s) 41, 362, 504
BsiHKCI CYCGRG 2 cut(s) 193, 377
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 10, 118
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 3 cut(s) 41, 362, 504
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 2 cut(s) 193, 377
Bsp143I GATC 3 cut(s) 154, 433, 493
BspACI CCGC 4 cut(s) 9, 245, 315, 420
BspANI GGCC 3 cut(s) 41, 362, 504
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 2 cut(s) 130, 531
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 3 cut(s) 154, 433, 493
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 3 cut(s) 8, 48, 180
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 3 cut(s) 249, 319, 593
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 3 cut(s) 135, 143, 616
BstKTI GATC 3 cut(s) 157, 436, 496
BstMAI GTCTC 2 cut(s) 10, 118
BstMBI GATC 3 cut(s) 154, 433, 493
BstMWI GCNNNNNNNGC 2 cut(s) 311, 320
BstSFI CTRYAG 2 cut(s) 208, 303
BstV1I GCAGC 2 cut(s) 284, 322
BstV2I GAAGAC 2 cut(s) 552, 561
BsuI GTATCC 1 cut(s) 647
BsuRI GGCC 3 cut(s) 41, 362, 504
BtgI CCRYGG 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 3 cut(s) 135, 143, 616
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 3 cut(s) 123, 300, 538
Cac8I GCNNGC 1 cut(s) 420
CspCI CAANNNNNGTGG 2 cut(s) 212, 247
CviAII CATG 2 cut(s) 431, 547
DdeI CTNAG 3 cut(s) 249, 319, 593
DpnI GATC 3 cut(s) 156, 435, 495
DpnII GATC 3 cut(s) 154, 433, 493
EaeI YGGCCR 2 cut(s) 39, 502
Eam1104I CTCTTC 3 cut(s) 8, 48, 180
EarI CTCTTC 3 cut(s) 8, 48, 180
Eco31I GGTCTC 1 cut(s) 10
Eco88I CYCGRG 2 cut(s) 193, 377
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 434, 550
FaiI YATR 8 cut(s) 6, 327, 384, 432, 485, 501, 548, 554
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 1 cut(s) 304
FatI CATG 2 cut(s) 430, 546
FauI CCCGC 2 cut(s) 2, 427
FbaI TGATCA 2 cut(s) 154, 493
Fnu4HI GCNGC 4 cut(s) 246, 273, 315, 336
FokI GGATG 3 cut(s) 122, 130, 623
Fsp4HI GCNGC 4 cut(s) 246, 273, 315, 336
FspBI CTAG 1 cut(s) 456
GluI GCNGC 4 cut(s) 246, 273, 315, 336
HaeIII GGCC 3 cut(s) 41, 362, 504
HapII CCGG 1 cut(s) 42
Hin1II CATG 2 cut(s) 434, 550
HincII GTYRAC 2 cut(s) 131, 394
HindII GTYRAC 2 cut(s) 131, 394
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 5 cut(s) 32, 92, 253, 527, 580
HpaII CCGG 1 cut(s) 42
HphI GGTGA 2 cut(s) 18, 626
Hpy166II GTNNAC 3 cut(s) 131, 394, 461
Hpy188I TCNGA 4 cut(s) 91, 97, 106, 118
Hpy188III TCNNGA 6 cut(s) 179, 257, 445, 479, 491, 516
Hpy8I GTNNAC 3 cut(s) 131, 394, 461
Hpy99I CGWCG 2 cut(s) 169, 651
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 2 cut(s) 293, 621
HpyCH4V TGCA 3 cut(s) 4, 305, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 320
HpyF3I CTNAG 3 cut(s) 249, 319, 593
HpySE526I ACGT 2 cut(s) 293, 621
Hsp92II CATG 2 cut(s) 434, 550
Ksp22I TGATCA 2 cut(s) 154, 493
Kzo9I GATC 3 cut(s) 154, 433, 493
LmnI GCTCC 1 cut(s) 481
LpnPI CCDG 5 cut(s) 42, 55, 111, 492, 544
Lsp1109I GCAGC 2 cut(s) 284, 322
MaeI CTAG 1 cut(s) 456
MaeII ACGT 2 cut(s) 293, 621
MaeIII GTNAC 4 cut(s) 188, 257, 353, 445
MalI GATC 3 cut(s) 156, 435, 495
MboI GATC 3 cut(s) 154, 433, 493
MboII GAAGA 9 cut(s) 25, 65, 153, 167, 320, 552, 555, 561, 637
MfeI CAATTG 1 cut(s) 471
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 2 cut(s) 471, 601
MluNI TGGCCA 1 cut(s) 504
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 7 cut(s) 30, 189, 206, 213, 344, 474, 601
Mox20I TGGCCA 1 cut(s) 504
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 504
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 3 cut(s) 387, 443, 551
Msp20I TGGCCA 1 cut(s) 504
MspI CCGG 1 cut(s) 42
MunI CAATTG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 311, 320
NdeII GATC 3 cut(s) 154, 433, 493
NlaIII CATG 2 cut(s) 434, 550
NmuCI GTSAC 3 cut(s) 257, 353, 445
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 193
PfeI GAWTC 5 cut(s) 32, 92, 253, 527, 580
PkrI GCNGC 4 cut(s) 247, 274, 316, 337
PspXI VCTCGAGB 1 cut(s) 193
PstI CTGCAG 1 cut(s) 307
RseI CAYNNNNRTG 3 cut(s) 387, 443, 551
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 4 cut(s) 246, 273, 315, 336
Sau3AI GATC 3 cut(s) 154, 433, 493
SetI ASST 9 cut(s) 22, 277, 296, 337, 355, 369, 457, 466, 624
SfcI CTRYAG 2 cut(s) 208, 303
Sfr274I CTCGAG 1 cut(s) 193
SlaI CTCGAG 1 cut(s) 193
SmiMI CAYNNNNRTG 3 cut(s) 387, 443, 551
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 2 cut(s) 471, 601
SsiI CCGC 4 cut(s) 9, 245, 315, 420
SspMI CTAG 1 cut(s) 456
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 2 cut(s) 296, 624
TaqI TCGA 3 cut(s) 194, 297, 517
TasI AATT 2 cut(s) 471, 601
TauI GCSGC 2 cut(s) 248, 317
TfiI GAWTC 5 cut(s) 32, 92, 253, 527, 580
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 3 cut(s) 130, 307, 538
TseFI GTSAC 3 cut(s) 257, 353, 445
TseI GCWGC 2 cut(s) 272, 335
Tsp45I GTSAC 3 cut(s) 257, 353, 445
TspDTI ATGAA 2 cut(s) 561, 563
TspRI CASTG 3 cut(s) 130, 307, 538
XapI RAATTY 1 cut(s) 601
XhoI CTCGAG 1 cut(s) 193
XspI CTAG 1 cut(s) 456
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.