Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0019572

Physical Location & Seq

Genomic Coordinates Forward (+)

15906555 .. 15909931

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGGCTGTTTCACTACCATTGTTTCAATTTATACTCTTTCTTCTTCTTCTTCTTCTTTCAAGAACGGTTTATGCATACTTAATCGGAGTCGGAAGCTATGACATCACTGGTCCTGCCGCTGATGTCAACATGATGGGCTACGCAAACTCAGATCAAATCGCTTCCGGTATTCATTTCCGGTTACGAGCTCGTGCCTTCATCGTCGCTGAGCCTCAAGGTAACCGCGTCGTGTTTGTCAATCTCGACGCTTGTATGGCTTCTCAAATCGTTACAATCAAAGTTCTTGAGCGTCTCAAAGCAAGGTATGGTGAGCTTTACACAGAGAAGAATGTAGCAATAAGTGGAATTCACACACATGCTGGACCAGGAGGATATCTTCAATACGTCACATATATTGTGACGTCTCTTGGATTTGTTCGTCAATCTTTTGACGTTGTTGTTAACGGCATTGAGCAAAGCATTGTCCAAGCACACGAAAGCCTACGTCCTGGTTCTGCTTTTGTTAACAAAGGGGATCTTTTGGATGCTGGTGTGAATCGAAGTCCGAGTTCTTATCTGAACAATCCTGCAGCTGAGAGGAGTAAATATAAGTATGATGTTGATAAGGAAATGACTCTTGTTAAGTTTGTTGATTCTCAGTTGGGACCTACTGGTAGTTTTAACTGGTTTGCTACTCATGGGACTTCCATGAGTCGGACTAACTCGTTGATTAGTGGAGATAACAAAGGCGCTGCAGCTCGGTTTATGGAGGATTGGTTTGAGAATGGACAGAAGAATTCTGTTAGCTCTAGAAACATCCCTCGGAGAGTATCAACCATTGTTTCTGATTTCAGTAGAAACCGTGATAGACTTTTGGATATTGCGGCTACTTATAAGTCATCTAGAGGACATTCTGTGGATAAGTCCCTTGATGTTAAAACCCGAGTAAGAAACGGTTCGAAGCGTAAATTTGTCTCTGCCTTCTGTCAATCAAACTGTGGTGATGTGAGTCCAAATACTCTTGGTACCTTTTGCATTGACACTGGACTGCCTTGTGATTTCAATCACAGTACCTGCAATGGACAGAACGAGTTGTGCTATGGCCGTGGTCCGGGCTACCCTGATGAATTTGAGAGTACACGTATCATTGGAGAAAAGCAATTCAAAATGGCTGTGGAACTTTTTAACAAAGCTACAGAGAAGCTGCAGGGGAAAATTGGTTACCAACATGCGTATCTAGATTTCTCGAATCTTGATGTCACAGTTCCTAAAGCAGGCGGTGGCTCTGAGACGGTTAAGACATGTCCAGCTGCAATGGGGTTTGGTTTTGCTGCTGGAACAACTGATGGTCCAGGTGCTTTTGATTTCAAACAAGGAGATGATCAGGGTAATGTGTTTTGGAGACTAGTGAGGAATGTGTTAAGAACTCCTGGTCCAGAACAGGTCCAATGCCAAAAACCAAAACCCATTTTACTTGACACTGGTGAGATGAAAGAACCATATGACTGGGCGCCTTCAATTCTTCCGATTCAGATACTTCGCATTGGCCAATTAGTCATCCTCAGTGTTCCCGGAGAGTTCACAACAATGGCTGGAAGACGTCTCCGTGACGCTATCAAGTCTTTTCTCATTTCTTCGGACCCCAAGGAATTCAGCAACAACATGCATGTCGTAATCGCAGGTCTCACCAACACCTATTCTCAGTACATCGCCACTTTCGAAGAGTACGAGGTTCAAAGATACGAGGGCGCCTCAACGTTATACGGACGACACACACTCACTGCTTATATCCAAGAGTTCAAGAAACTAGCCACAGCTTTAGTTAACGGTCTAACACTCCCACGTGGTCCGCAACCTCCTGACCTTTTAGACAAACAGATCAGTTTACTATCCCCTGTGGTTGTAGACTCAACTCCTCTAGGAGTCAAATTCGGTGACGTCAAAGCTGATGTACCTCCAAAGTCAACGTTCAGGAGAGGTCAACAAGTTAACGCAACGTTTTGGTCAGGATGTCCTCGAAATGATTTGATGACTGAAGGATCATTCGCTGTGGTGGAGACGCTGCGTGAGGGAGGGAAATGGGCTCCGGTGTATGATGACGATGACTTCAGTTTGAAGTTCAAGTGGTCGAGACCGGCAAAGCTGAGTTCGGAGAGCCAAGCCACGATTGAGTGGAGGGTACCGGAATCTGCGGTAGCCGGAGTTTATAGAATAAGACATTATGGAGCTTCTAAGTCGTTGTTTGGATCCATTAGTAGCTTCTCTGGTTCTTCTAGTGCCTTTGTAGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0019725 GO:0030054 GO:0031090 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050896 GO:0051716 GO:0055044 GO:0055082 GO:0055088 GO:0065007 GO:0065008 GO:0070887 GO:0090156 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

Ceramidase_alk Ceramidse_alk_C

Protein Analysis

757

Amino Acids

83.26

Weight (kDa)

8.74

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ceramidase_alk	PF04734	26 - 626	7e-224	Neutral/alkaline non-lysosomal ceramidase, N-terminal
Ceramidse_alk_C	PF17048	628 - 791	1.2e-56	Neutral/alkaline non-lysosomal ceramidase, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38010 AT2G38010 AT2G38010
malus_domestica	MD12G1158800.v1.1
prunus_persica	Prupe.6G269200_v2.0.a1 Prupe.6G269200_v2.0.a1
pyrus_communis	pycom12g15070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
AatII	GACGTC	3 cut(s)	404, 1582, 1920
Acc36I	ACCTGC	2 cut(s)	1061, 1649
Acc65I	GGTACC	2 cut(s)	1004, 2158
AccB1I	GGYRCC	4 cut(s)	1004, 1489, 1727, 2158
AccI	GTMKAC	1 cut(s)	1884
AccII	CGCG	1 cut(s)	225
AciI	CCGC	6 cut(s)	117, 223, 863, 1257, 1829, 2171
AclI	AACGTT	3 cut(s)	1736, 1946, 1976
AclWI	GGATC	4 cut(s)	522, 2026, 2220, 2233
AcoI	YGGCCR	2 cut(s)	1081, 1525
AcsI	RAATTY	6 cut(s)	345, 775, 947, 1106, 1628, 1907
AcuI	CTGAAG	2 cut(s)	2034, 2071
AcvI	CACGTG	1 cut(s)	1823
AcyI	GRCGYC	5 cut(s)	401, 1490, 1579, 1728, 1917
AfaI	GTAC	7 cut(s)	1006, 1051, 1117, 1685, 1706, 1932, 2160
AfiI	CCNNNNNNNGG	3 cut(s)	693, 1090, 1253
AflIII	ACRYGT	2 cut(s)	1118, 1280
AhlI	ACTAGT	1 cut(s)	1384
AjnI	CCWGG	4 cut(s)	364, 487, 1330, 1408
AloI	GAACNNNNNNTCC	2 cut(s)	1396, 1428
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	9 cut(s)	296, 408, 958, 1262, 1375, 1586, 1667, 2030, 2104
AlwI	GGATC	4 cut(s)	522, 2026, 2220, 2233
AlwNI	CAGNNNCTG	1 cut(s)	1053
Ama87I	CYCGRG	1 cut(s)	921
AoxI	GGCC	2 cut(s)	1081, 1525
ApeKI	GCWGC	7 cut(s)	569, 731, 734, 1183, 1289, 1310, 2041
ApoI	RAATTY	6 cut(s)	345, 775, 947, 1106, 1628, 1907
Asp700I	GAANNNNTTC	1 cut(s)	934
Asp718I	GGTACC	2 cut(s)	1004, 2158
AspLEI	GCGC	3 cut(s)	731, 1492, 1730
AspS9I	GGNCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
AsuC2I	CCSGG	2 cut(s)	1092, 1551
AsuHPI	GGTGA	5 cut(s)	320, 992, 1475, 1657, 1925
AsuII	TTCGAA	2 cut(s)	938, 1698
AvaI	CYCGRG	1 cut(s)	921
AvaII	GGWCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
BaeI	ACNNNNGTAYC	2 cut(s)	1196, 1229
BalI	TGGCCA	1 cut(s)	1527
BamHI	GGATCC	1 cut(s)	2225
BanI	GGYRCC	4 cut(s)	1004, 1489, 1727, 2158
BanII	GRGCYC	2 cut(s)	190, 2065
BauI	CACGAG	1 cut(s)	189
BbrPI	CACGTG	1 cut(s)	1823
BbsI	GAAGAC	1 cut(s)	1582
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	7 cut(s)	581, 718, 746, 1170, 1276, 1297, 2028
BccI	CCATC	2 cut(s)	127, 1319
BceAI	ACGGC	2 cut(s)	460, 1068
BciT130I	CCWGG	4 cut(s)	366, 489, 1332, 1410
BclI	TGATCA	1 cut(s)	1360
BcnI	CCSGG	2 cut(s)	1092, 1551
BcoDI	GTCTC	9 cut(s)	296, 408, 958, 1262, 1375, 1586, 1667, 2030, 2104
BcuI	ACTAGT	1 cut(s)	1384
BfaI	CTAG	7 cut(s)	789, 882, 1217, 1385, 1787, 1898, 2253
BfmI	CTRYAG	4 cut(s)	567, 732, 1173, 1184
BfoI	RGCGCY	3 cut(s)	732, 1493, 1731
BfuAI	ACCTGC	2 cut(s)	1061, 1649
BisI	GCNGC	9 cut(s)	117, 570, 732, 735, 864, 1184, 1290, 1311, 2042
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	9 cut(s)	118, 571, 733, 736, 865, 1185, 1291, 1312, 2043
Bme1390I	CCNGG	6 cut(s)	366, 489, 1092, 1332, 1410, 1551
Bme18I	GGWCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
BmeT110I	CYCGRG	1 cut(s)	921
BmgT120I	GGNCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
BmiI	GGNNCC	8 cut(s)	645, 1006, 1491, 1620, 1729, 2064, 2160, 2227
BmrFI	CCNGG	6 cut(s)	366, 489, 1092, 1332, 1410, 1551
BmrI	ACTGGG	1 cut(s)	1495
BmsI	GCATC	1 cut(s)	514
BmuI	ACTGGG	1 cut(s)	1495
BpiI	GAAGAC	1 cut(s)	1582
BplI	GAGNNNNNCTC	2 cut(s)	1715, 1747
Bpu1102I	GCTNAGC	1 cut(s)	207
Bpu14I	TTCGAA	2 cut(s)	938, 1698
BpuEI	CTTGAG	2 cut(s)	198, 305
BpuMI	CCSGG	2 cut(s)	1092, 1551
BsaAI	YACGTR	2 cut(s)	1121, 1823
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaHI	GRCGYC	5 cut(s)	401, 1490, 1579, 1728, 1917
BsaI	GGTCTC	2 cut(s)	1667, 2104
BsaJI	CCNNGG	3 cut(s)	800, 1084, 1623
BsaWI	WCCGGW	4 cut(s)	164, 177, 2065, 2161
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	693, 1090, 1253
Bse118I	RCCGGY	1 cut(s)	2113
Bse1I	ACTGG	6 cut(s)	112, 655, 668, 1027, 1465, 1490
Bse3DI	GCAATG	2 cut(s)	1063, 1299
Bse8I	GATNNNNATC	1 cut(s)	1041
BseBI	CCWGG	4 cut(s)	366, 489, 1332, 1410
BseDI	CCNNGG	3 cut(s)	800, 1084, 1623
BseGI	GGATG	4 cut(s)	529, 795, 1536, 1994
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	3 cut(s)	693, 1090, 1253
BseMI	GCAATG	2 cut(s)	1063, 1299
BseMII	CTCAG	8 cut(s)	162, 198, 564, 650, 1257, 1555, 1694, 2114
BseNI	ACTGG	6 cut(s)	112, 655, 668, 1027, 1465, 1490
BseRI	GAGGAG	2 cut(s)	592, 1884
BseXI	GCAGC	7 cut(s)	581, 718, 746, 1170, 1276, 1297, 2028
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	1083, 1527
BshNI	GGYRCC	4 cut(s)	1004, 1489, 1727, 2158
BsiHKAI	GWGCWC	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	921
BsiSI	CCGG	8 cut(s)	165, 178, 1091, 1551, 2066, 2114, 2162, 2178
BslFI	GGGAC	3 cut(s)	657, 694, 889
BslI	CCNNNNNNNGG	3 cut(s)	693, 1090, 1253
BsmAI	GTCTC	9 cut(s)	296, 408, 958, 1262, 1375, 1586, 1667, 2030, 2104
BsmBI	CGTCTC	5 cut(s)	296, 408, 1262, 1586, 2030
BsmFI	GGGAC	3 cut(s)	657, 694, 889
BsnI	GGCC	2 cut(s)	1083, 1527
Bso31I	GGTCTC	2 cut(s)	1667, 2104
BsoBI	CYCGRG	1 cut(s)	921
Bsp119I	TTCGAA	2 cut(s)	938, 1698
Bsp1286I	GDGCHC	2 cut(s)	190, 2065
Bsp143I	GATC	6 cut(s)	151, 514, 1360, 1857, 2018, 2225
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	6 cut(s)	117, 223, 863, 1257, 1829, 2171
BspANI	GGCC	2 cut(s)	1083, 1527
BspCNI	CTCAG	8 cut(s)	161, 199, 565, 649, 1258, 1554, 1693, 2115
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	8 cut(s)	645, 1006, 1491, 1620, 1729, 2064, 2160, 2227
BspMAI	CTGCAG	3 cut(s)	571, 736, 1188
BspMI	ACCTGC	2 cut(s)	1061, 1649
BspPI	GGATC	4 cut(s)	522, 2026, 2220, 2233
BspT104I	TTCGAA	2 cut(s)	938, 1698
BspT107I	GGYRCC	4 cut(s)	1004, 1489, 1727, 2158
BspTNI	GGTCTC	2 cut(s)	1667, 2104
BsrDI	GCAATG	2 cut(s)	1063, 1299
BsrFI	RCCGGY	1 cut(s)	2113
BsrI	ACTGG	6 cut(s)	112, 655, 668, 1027, 1465, 1490
BssAI	RCCGGY	1 cut(s)	2113
BssECI	CCNNGG	3 cut(s)	800, 1084, 1623
BssMI	GATC	6 cut(s)	151, 514, 1360, 1857, 2018, 2225
BssNI	GRCGYC	5 cut(s)	401, 1490, 1579, 1728, 1917
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	1623
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	4 cut(s)	366, 489, 1332, 1410
Bst4CI	ACNGT	8 cut(s)	67, 842, 935, 977, 1049, 1243, 1273, 1808
Bst6I	CTCTTC	1 cut(s)	1695
BstACI	GRCGYC	5 cut(s)	401, 1490, 1579, 1728, 1917
BstBAI	YACGTR	2 cut(s)	1121, 1823
BstBI	TTCGAA	2 cut(s)	938, 1698
BstC8I	GCNNGC	1 cut(s)	1255
BstDEI	CTNAG	9 cut(s)	148, 207, 573, 636, 1266, 1541, 1680, 2123, 2211
BstDSI	CCRYGG	1 cut(s)	1084
BstEII	GGTNACC	2 cut(s)	218, 1199
BstENI	CCTNNNNNAGG	1 cut(s)	1251
BstF5I	GGATG	4 cut(s)	529, 795, 1536, 1994
BstFNI	CGCG	1 cut(s)	225
BstH2I	RGCGCY	3 cut(s)	732, 1493, 1731
BstHHI	GCGC	3 cut(s)	731, 1492, 1730
BstKTI	GATC	6 cut(s)	154, 517, 1363, 1860, 2021, 2228
BstMAI	GTCTC	9 cut(s)	296, 408, 958, 1262, 1375, 1586, 1667, 2030, 2104
BstMBI	GATC	6 cut(s)	151, 514, 1360, 1857, 2018, 2225
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	4 cut(s)	366, 489, 1332, 1410
BstNSI	RCATGY	5 cut(s)	359, 1211, 1284, 1645, 1649
BstPI	GGTNACC	2 cut(s)	218, 1199
BstSCI	CCNGG	6 cut(s)	364, 487, 1090, 1330, 1408, 1549
BstSFI	CTRYAG	4 cut(s)	567, 732, 1173, 1184
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	7 cut(s)	581, 718, 746, 1170, 1276, 1297, 2028
BstV2I	GAAGAC	1 cut(s)	1582
BstX2I	RGATCY	2 cut(s)	514, 2225
BstXI	CCANNNNNNTGG	1 cut(s)	1485
BstYI	RGATCY	2 cut(s)	514, 2225
BsuRI	GGCC	2 cut(s)	1083, 1527
BtgI	CCRYGG	1 cut(s)	1084
BtgZI	GCGATG	1 cut(s)	1672
BtsCI	GGATG	4 cut(s)	529, 795, 1536, 1994
BtsI	GCAGTG	1 cut(s)	1758
BtsIMutI	CAGTG	5 cut(s)	105, 1020, 1458, 1549, 1758
BveI	ACCTGC	2 cut(s)	1061, 1649
Cac8I	GCNNGC	1 cut(s)	1255
CaiI	CAGNNNCTG	1 cut(s)	1053
CfoI	GCGC	3 cut(s)	731, 1492, 1730
Cfr10I	RCCGGY	1 cut(s)	2113
Cfr13I	GGNCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
CseI	GACGC	5 cut(s)	214, 254, 278, 1598, 2047
Csp6I	GTAC	7 cut(s)	1005, 1050, 1116, 1684, 1705, 1931, 2159
CviAII	CATG	8 cut(s)	130, 356, 677, 688, 1208, 1281, 1642, 1646
CviQI	GTAC	7 cut(s)	1005, 1050, 1116, 1684, 1705, 1931, 2159
DdeI	CTNAG	9 cut(s)	148, 207, 573, 636, 1266, 1541, 1680, 2123, 2211
DinI	GGCGCC	2 cut(s)	1491, 1729
DpnI	GATC	6 cut(s)	153, 516, 1362, 1859, 2020, 2227
DpnII	GATC	6 cut(s)	151, 514, 1360, 1857, 2018, 2225
EaeI	YGGCCR	2 cut(s)	1081, 1525
Eam1104I	CTCTTC	1 cut(s)	1695
EarI	CTCTTC	1 cut(s)	1695
Ecl136II	GAGCTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	1623
Eco24I	GRGCYC	2 cut(s)	190, 2065
Eco31I	GGTCTC	2 cut(s)	1667, 2104
Eco32I	GATATC	1 cut(s)	374
Eco47I	GGWCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
Eco53kI	GAGCTC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	2034, 2071
Eco72I	CACGTG	1 cut(s)	1823
Eco88I	CYCGRG	1 cut(s)	921
Eco91I	GGTNACC	2 cut(s)	218, 1199
EcoICRI	GAGCTC	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	1251
EcoO109I	RGGNCCY	1 cut(s)	644
EcoO65I	GGTNACC	2 cut(s)	218, 1199
EcoRI	GAATTC	3 cut(s)	345, 775, 1628
EcoRII	CCWGG	4 cut(s)	364, 487, 1330, 1408
EcoRV	GATATC	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	1623
EcoT22I	ATGCAT	2 cut(s)	76, 1647
EcoT38I	GRGCYC	2 cut(s)	190, 2065
EgeI	GGCGCC	2 cut(s)	1491, 1729
EheI	GGCGCC	2 cut(s)	1491, 1729
ErhI	CCWWGG	1 cut(s)	1623
Esp3I	CGTCTC	5 cut(s)	296, 408, 1262, 1586, 2030
FaeI	CATG	8 cut(s)	133, 359, 680, 691, 1211, 1284, 1645, 1649
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	3 cut(s)	657, 694, 889
FatI	CATG	8 cut(s)	129, 355, 676, 687, 1207, 1280, 1641, 1645
FauNDI	CATATG	1 cut(s)	1480
FbaI	TGATCA	1 cut(s)	1360
FblI	GTMKAC	1 cut(s)	1884
Fnu4HI	GCNGC	9 cut(s)	117, 570, 732, 735, 864, 1184, 1290, 1311, 2042
FokI	GGATG	4 cut(s)	536, 782, 1523, 2001
FriOI	GRGCYC	2 cut(s)	190, 2065
Fsp4HI	GCNGC	9 cut(s)	117, 570, 732, 735, 864, 1184, 1290, 1311, 2042
FspBI	CTAG	7 cut(s)	789, 882, 1217, 1385, 1787, 1898, 2253
GlaI	GCGC	3 cut(s)	730, 1491, 1729
GluI	GCNGC	9 cut(s)	117, 570, 732, 735, 864, 1184, 1290, 1311, 2042
HaeII	RGCGCY	3 cut(s)	732, 1493, 1731
HaeIII	GGCC	2 cut(s)	1083, 1527
HapII	CCGG	8 cut(s)	165, 178, 1091, 1551, 2066, 2114, 2162, 2178
HgaI	GACGC	5 cut(s)	214, 254, 278, 1598, 2047
HhaI	GCGC	3 cut(s)	731, 1492, 1730
Hin1I	GRCGYC	5 cut(s)	401, 1490, 1579, 1728, 1917
Hin1II	CATG	8 cut(s)	133, 359, 680, 691, 1211, 1284, 1645, 1649
Hin6I	GCGC	3 cut(s)	729, 1490, 1728
HinP1I	GCGC	3 cut(s)	729, 1490, 1728
HincII	GTYRAC	7 cut(s)	127, 442, 505, 1804, 1944, 1961, 1969
HindII	GTYRAC	7 cut(s)	127, 442, 505, 1804, 1944, 1961, 1969
HpaI	GTTAAC	4 cut(s)	442, 505, 1804, 1969
HpaII	CCGG	8 cut(s)	165, 178, 1091, 1551, 2066, 2114, 2162, 2178
HphI	GGTGA	5 cut(s)	320, 992, 1475, 1657, 1925
Hpy99I	CGWCG	3 cut(s)	206, 230, 248
HpyAV	CCTTC	4 cut(s)	205, 970, 1503, 2009
HpyCH4III	ACNGT	8 cut(s)	67, 842, 935, 977, 1049, 1243, 1273, 1808
HpyCH4V	TGCA	8 cut(s)	74, 569, 734, 1014, 1056, 1186, 1292, 1645
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	9 cut(s)	148, 207, 573, 636, 1266, 1541, 1680, 2123, 2211
Hsp92I	GRCGYC	5 cut(s)	401, 1490, 1579, 1728, 1917
Hsp92II	CATG	8 cut(s)	133, 359, 680, 691, 1211, 1284, 1645, 1649
HspAI	GCGC	3 cut(s)	729, 1490, 1728
KasI	GGCGCC	2 cut(s)	1489, 1727
KpnI	GGTACC	2 cut(s)	1008, 2162
Ksp22I	TGATCA	1 cut(s)	1360
KspAI	GTTAAC	4 cut(s)	442, 505, 1804, 1969
Kzo9I	GATC	6 cut(s)	151, 514, 1360, 1857, 2018, 2225
LmnI	GCTCC	2 cut(s)	2068, 2204
Lsp1109I	GCAGC	7 cut(s)	581, 718, 746, 1170, 1276, 1297, 2028
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	7 cut(s)	789, 882, 1217, 1385, 1787, 1898, 2253
MaeIII	GTNAC	9 cut(s)	180, 218, 268, 385, 397, 1199, 1237, 1586, 1913
MalI	GATC	6 cut(s)	153, 516, 1362, 1859, 2020, 2227
MboI	GATC	6 cut(s)	151, 514, 1360, 1857, 2018, 2225
MflI	RGATCY	2 cut(s)	514, 2225
MhlI	GDGCHC	2 cut(s)	190, 2065
MlsI	TGGCCA	1 cut(s)	1527
MluNI	TGGCCA	1 cut(s)	1527
Mly113I	GGCGCC	2 cut(s)	1490, 1728
MlyI	GAGTC	6 cut(s)	96, 607, 700, 997, 1880, 1911
MmeI	TCCRAC	2 cut(s)	70, 674
Mox20I	TGGCCA	1 cut(s)	1527
Mph1103I	ATGCAT	2 cut(s)	76, 1647
MroXI	GAANNNNTTC	1 cut(s)	934
MscI	TGGCCA	1 cut(s)	1527
MslI	CAYNNNNRTG	2 cut(s)	354, 1565
Msp20I	TGGCCA	1 cut(s)	1527
MspA1I	CMGCKG	3 cut(s)	119, 572, 1289
MspI	CCGG	8 cut(s)	165, 178, 1091, 1551, 2066, 2114, 2162, 2178
MspR9I	CCNGG	6 cut(s)	366, 489, 1092, 1332, 1410, 1551
MvaI	CCWGG	4 cut(s)	366, 489, 1332, 1410
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	254
NarI	GGCGCC	2 cut(s)	1490, 1728
NciI	CCSGG	2 cut(s)	1092, 1551
NdeI	CATATG	1 cut(s)	1480
NdeII	GATC	6 cut(s)	151, 514, 1360, 1857, 2018, 2225
NlaIII	CATG	8 cut(s)	133, 359, 680, 691, 1211, 1284, 1645, 1649
NlaIV	GGNNCC	8 cut(s)	645, 1006, 1491, 1620, 1729, 2064, 2160, 2227
NmuCI	GTSAC	5 cut(s)	385, 397, 1237, 1586, 1913
NsiI	ATGCAT	2 cut(s)	76, 1647
NspI	RCATGY	5 cut(s)	359, 1211, 1284, 1645, 1649
NspV	TTCGAA	2 cut(s)	938, 1698
PciI	ACATGT	1 cut(s)	1280
PcsI	WCGNNNNNNNCGW	2 cut(s)	1695, 1704
PdmI	GAANNNNTTC	1 cut(s)	934
PfeI	GAWTC	5 cut(s)	535, 632, 1228, 1507, 2165
PfoI	TCCNGGA	1 cut(s)	1549
PkrI	GCNGC	9 cut(s)	118, 571, 733, 736, 865, 1185, 1291, 1312, 2043
PleI	GAGTC	6 cut(s)	95, 607, 699, 996, 1880, 1910
PluTI	GGCGCC	2 cut(s)	1493, 1731
PmaCI	CACGTG	1 cut(s)	1823
PmlI	CACGTG	1 cut(s)	1823
PpsI	GAGTC	6 cut(s)	95, 607, 699, 996, 1880, 1910
Ppu21I	YACGTR	2 cut(s)	1121, 1823
PpuMI	RGGWCCY	1 cut(s)	644
PscI	ACATGT	1 cut(s)	1280
PsiI	TTATAA	1 cut(s)	873
Psp124BI	GAGCTC	1 cut(s)	190
Psp1406I	AACGTT	3 cut(s)	1736, 1946, 1976
Psp5II	RGGWCCY	1 cut(s)	644
Psp6I	CCWGG	4 cut(s)	364, 487, 1330, 1408
PspCI	CACGTG	1 cut(s)	1823
PspEI	GGTNACC	2 cut(s)	218, 1199
PspGI	CCWGG	4 cut(s)	364, 487, 1330, 1408
PspN4I	GGNNCC	8 cut(s)	645, 1006, 1491, 1620, 1729, 2064, 2160, 2227
PspPI	GGNCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
PspPPI	RGGWCCY	1 cut(s)	644
PstI	CTGCAG	3 cut(s)	571, 736, 1188
PstNI	CAGNNNCTG	1 cut(s)	1053
PsuI	RGATCY	2 cut(s)	514, 2225
PvuII	CAGCTG	2 cut(s)	572, 1289
RsaI	GTAC	7 cut(s)	1006, 1051, 1117, 1685, 1706, 1932, 2160
RsaNI	GTAC	7 cut(s)	1005, 1050, 1116, 1684, 1705, 1931, 2159
RseI	CAYNNNNRTG	2 cut(s)	354, 1565
SacI	GAGCTC	1 cut(s)	190
SatI	GCNGC	9 cut(s)	117, 570, 732, 735, 864, 1184, 1290, 1311, 2042
Sau3AI	GATC	6 cut(s)	151, 514, 1360, 1857, 2018, 2225
Sau96I	GGNCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
SchI	GAGTC	6 cut(s)	96, 607, 700, 997, 1880, 1911
ScrFI	CCNGG	6 cut(s)	366, 489, 1092, 1332, 1410, 1551
SduI	GDGCHC	2 cut(s)	190, 2065
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	4 cut(s)	567, 732, 1173, 1184
SfoI	GGCGCC	2 cut(s)	1491, 1729
SfuI	TTCGAA	2 cut(s)	938, 1698
SinI	GGWCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
SmiMI	CAYNNNNRTG	2 cut(s)	354, 1565
SmlI	CTYRAG	2 cut(s)	213, 284
SmoI	CTYRAG	2 cut(s)	213, 284
SpeI	ACTAGT	1 cut(s)	1384
SsiI	CCGC	6 cut(s)	117, 223, 863, 1257, 1829, 2171
SspDI	GGCGCC	2 cut(s)	1489, 1727
SspMI	CTAG	7 cut(s)	789, 882, 1217, 1385, 1787, 1898, 2253
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	6 cut(s)	364, 487, 1090, 1330, 1408, 1549
StyI	CCWWGG	1 cut(s)	1623
TaaI	ACNGT	8 cut(s)	67, 842, 935, 977, 1049, 1243, 1273, 1808
TaqI	TCGA	7 cut(s)	243, 538, 938, 1226, 1698, 1996, 2108
TatI	WGTACW	2 cut(s)	1115, 1683
TauI	GCSGC	2 cut(s)	119, 866
TfiI	GAWTC	5 cut(s)	535, 632, 1228, 1507, 2165
TscAI	CASTG	5 cut(s)	112, 1027, 1465, 1549, 1765
TseFI	GTSAC	5 cut(s)	385, 397, 1237, 1586, 1913
TseI	GCWGC	7 cut(s)	569, 731, 734, 1183, 1289, 1310, 2041
Tsp45I	GTSAC	5 cut(s)	385, 397, 1237, 1586, 1913
TspDTI	ATGAA	4 cut(s)	161, 187, 1119, 1484
TspGWI	ACGGA	2 cut(s)	1574, 1758
TspRI	CASTG	5 cut(s)	112, 1027, 1465, 1549, 1765
VpaK11BI	GGWCC	9 cut(s)	110, 362, 644, 1088, 1328, 1412, 1423, 1618, 1826
XagI	CCTNNNNNAGG	1 cut(s)	1251
XapI	RAATTY	6 cut(s)	345, 775, 947, 1106, 1628, 1907
XbaI	TCTAGA	3 cut(s)	788, 881, 1216
XceI	RCATGY	5 cut(s)	359, 1211, 1284, 1645, 1649
XmiI	GTMKAC	1 cut(s)	1884
XmnI	GAANNNNTTC	1 cut(s)	934
XspI	CTAG	7 cut(s)	789, 882, 1217, 1385, 1787, 1898, 2253
ZraI	GACGTC	3 cut(s)	402, 1580, 1918
Zsp2I	ATGCAT	2 cut(s)	76, 1647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.