AT3G12820
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0027175
Physical Location & Seq
Reverse (-)
4073855 .. 4075643
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12820.2

Sequence Viewer

Length: 720 bp
ATGGGGAATAGAAGAGCACCATGCTGTGACAAAAGCCAAGTGAAGAGAGGGCCATGGAGTGATGAAGAAAGTGAAAGACTCAGATCTTTTATCCTCAAAAATGGTCATCAAAATTGGCGATCTCTTCCCAAACTCGCTGGATTGATGAGATGCGGAAAGAGTTGTCGTCTAAGATGGATAAACTATCTGAGACCAGGTCTCAAACGAGGCAACTTCACCAAGGAGGAGGAAGATACCATTATCCACCTTCACCAAGCTTATGGAAACAAGTGGTCTAAGATCGCATCCAACTTCCCGGGAAGGACAGACAACGAGATCAAGAATGTATGGAACACTCATCTCAAGAAGCGGTTGGTGAAGAGGAGCATTTCATCATCATCATCCGATGTTACCAATCATTCAGTGTCTTCTACCTCTTCTTCCTCTTCCTCAATCTCGTCAGTCTTGCAGGACGTTATTATTAAGAGTGAGAGGCCTAACCAGGAAGAGGAGTTTGGGGAAATCTTGGTGGAGCAAATGGCATGTGGATTTGAGGTGGATGCACCACAATCACTAGAATGTCTCTTTGACGATAGCCAGGTTCCTCCTCCTATATCTAAACCAGACTCACTACAAACCCATGGGAAGTCATCAGATCACGAATTTTGGAGCCGACTGATTGAACCAGGGTTCGATGATTACAATGAGTGGCTCATTTTCTTGGATAACCAAACTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

239

Amino Acids

27.32

Weight (kDa)

7.04

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 66 6.9e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 70 1.1e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12820 AT3G12820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 153, 349
AcsI RAATTY 1 cut(s) 641
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 1 cut(s) 662
AjnI CCWGG 4 cut(s) 193, 480, 576, 664
AjuI GAANNNNNNNTTGG 2 cut(s) 477, 509
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 3 cut(s) 184, 203, 566
Ama87I CYCGRG 1 cut(s) 295
AoxI GGCC 2 cut(s) 50, 473
ApoI RAATTY 1 cut(s) 641
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 2 cut(s) 296, 297
AsuHPI GGTGA 3 cut(s) 208, 242, 367
AvaI CYCGRG 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 19
BccI CCATC 1 cut(s) 168
BciT130I CCWGG 4 cut(s) 195, 482, 578, 666
BcnI CCSGG 2 cut(s) 296, 297
BcoDI GTCTC 3 cut(s) 184, 203, 566
BfaI CTAG 2 cut(s) 554, 718
BglII AGATCT 1 cut(s) 83
Bme1390I CCNGG 6 cut(s) 195, 296, 297, 482, 578, 666
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 582, 650
BmrFI CCNGG 6 cut(s) 195, 296, 297, 482, 578, 666
BmsI GCATC 3 cut(s) 140, 293, 529
BpiI GAAGAC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 296, 297
BsaI GGTCTC 2 cut(s) 184, 203
BsaJI CCNNGG 5 cut(s) 53, 219, 295, 619, 665
Bsc4I CCNNNNNNNGG 1 cut(s) 487
BseBI CCWGG 4 cut(s) 195, 482, 578, 666
BseDI CCNNGG 5 cut(s) 53, 219, 295, 619, 665
BseGI GGATG 3 cut(s) 284, 380, 544
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMII CTCAG 2 cut(s) 94, 179
BseRI GAGGAG 4 cut(s) 239, 376, 503, 576
BshFI GGCC 2 cut(s) 52, 475
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 487
BsmAI GTCTC 3 cut(s) 184, 203, 566
BsnI GGCC 2 cut(s) 52, 475
Bso31I GGTCTC 2 cut(s) 184, 203
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 5 cut(s) 83, 119, 279, 315, 634
Bsp19I CCATGG 2 cut(s) 53, 619
BspACI CCGC 2 cut(s) 153, 349
BspANI GGCC 2 cut(s) 52, 475
BspCNI CTCAG 2 cut(s) 93, 180
BspLI GGNNCC 2 cut(s) 582, 650
BspQI GCTCTTC 1 cut(s) 7
BspTNI GGTCTC 2 cut(s) 184, 203
BssECI CCNNGG 5 cut(s) 53, 219, 295, 619, 665
BssMI GATC 5 cut(s) 83, 119, 279, 315, 634
BssT1I CCWWGG 3 cut(s) 53, 219, 619
Bst2UI CCWGG 4 cut(s) 195, 482, 578, 666
Bst6I CTCTTC 7 cut(s) 7, 38, 129, 353, 421, 430, 480
BstDEI CTNAG 4 cut(s) 80, 170, 188, 276
BstDSI CCRYGG 2 cut(s) 53, 619
BstF5I GGATG 3 cut(s) 284, 380, 544
BstKTI GATC 5 cut(s) 86, 122, 282, 318, 637
BstMAI GTCTC 3 cut(s) 184, 203, 566
BstMBI GATC 5 cut(s) 83, 119, 279, 315, 634
BstNI CCWGG 4 cut(s) 195, 482, 578, 666
BstNSI RCATGY 1 cut(s) 525
BstSCI CCNGG 6 cut(s) 193, 294, 295, 480, 576, 664
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 2 cut(s) 52, 475
BtgI CCRYGG 2 cut(s) 53, 619
BtsCI GGATG 3 cut(s) 284, 380, 544
BtsIMutI CAGTG 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 50
Cfr9I CCCGGG 1 cut(s) 295
CsiI ACCWGGT 1 cut(s) 193
CviAII CATG 4 cut(s) 21, 54, 522, 620
CviJI RGCY 7 cut(s) 36, 52, 257, 475, 576, 651, 691
CviKI_1 RGCY 7 cut(s) 36, 52, 257, 475, 576, 651, 691
DdeI CTNAG 4 cut(s) 80, 170, 188, 276
DpnI GATC 5 cut(s) 85, 121, 281, 317, 636
DpnII GATC 5 cut(s) 83, 119, 279, 315, 634
Eam1104I CTCTTC 7 cut(s) 7, 38, 129, 353, 421, 430, 480
EarI CTCTTC 7 cut(s) 7, 38, 129, 353, 421, 430, 480
Eco130I CCWWGG 3 cut(s) 53, 219, 619
Eco147I AGGCCT 1 cut(s) 475
Eco31I GGTCTC 2 cut(s) 184, 203
Eco88I CYCGRG 1 cut(s) 295
EcoRII CCWGG 4 cut(s) 193, 480, 576, 664
EcoT14I CCWWGG 3 cut(s) 53, 219, 619
ErhI CCWWGG 3 cut(s) 53, 219, 619
FaeI CATG 4 cut(s) 24, 57, 525, 623
FaiI YATR 7 cut(s) 22, 55, 261, 328, 523, 593, 621
FatI CATG 4 cut(s) 20, 53, 521, 619
FokI GGATG 3 cut(s) 271, 367, 551
FspBI CTAG 2 cut(s) 554, 718
HaeIII GGCC 2 cut(s) 52, 475
HapII CCGG 1 cut(s) 296
Hin1II CATG 4 cut(s) 24, 57, 525, 623
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 78, 605
HpaII CCGG 1 cut(s) 296
HphI GGTGA 3 cut(s) 208, 242, 367
Hpy188I TCNGA 4 cut(s) 83, 189, 385, 634
Hpy188III TCNNGA 3 cut(s) 319, 343, 638
HpyAV CCTTC 2 cut(s) 257, 294
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 2 cut(s) 448, 542
HpyF3I CTNAG 4 cut(s) 80, 170, 188, 276
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 4 cut(s) 24, 57, 525, 623
Kzo9I GATC 5 cut(s) 83, 119, 279, 315, 634
LguI GCTCTTC 1 cut(s) 7
LmnI GCTCC 3 cut(s) 363, 511, 648
LweI GCATC 3 cut(s) 140, 293, 529
MabI ACCWGGT 1 cut(s) 193
MaeI CTAG 2 cut(s) 554, 718
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 2 cut(s) 26, 388
MalI GATC 5 cut(s) 85, 121, 281, 317, 636
MboI GATC 5 cut(s) 83, 119, 279, 315, 634
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 2 cut(s) 112, 641
MlyI GAGTC 2 cut(s) 72, 599
MmeI TCCRAC 1 cut(s) 312
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 556
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 6 cut(s) 195, 296, 297, 482, 578, 666
MvaI CCWGG 4 cut(s) 195, 482, 578, 666
NciI CCSGG 2 cut(s) 296, 297
NcoI CCATGG 2 cut(s) 53, 619
NdeII GATC 5 cut(s) 83, 119, 279, 315, 634
NlaIII CATG 4 cut(s) 24, 57, 525, 623
NlaIV GGNNCC 2 cut(s) 582, 650
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 525
PceI AGGCCT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 195
PleI GAGTC 2 cut(s) 72, 599
PpsI GAGTC 2 cut(s) 72, 599
Psp6I CCWGG 4 cut(s) 193, 480, 576, 664
PspGI CCWGG 4 cut(s) 193, 480, 576, 664
PspN4I GGNNCC 2 cut(s) 582, 650
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 1 cut(s) 83
PsyI GACNNNGTC 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 556
SapI GCTCTTC 1 cut(s) 7
SaqAI TTAA 1 cut(s) 462
Sau3AI GATC 5 cut(s) 83, 119, 279, 315, 634
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 2 cut(s) 72, 599
ScrFI CCNGG 6 cut(s) 195, 296, 297, 482, 578, 666
SduI GDGCHC 1 cut(s) 19
SetI ASST 7 cut(s) 199, 249, 259, 416, 456, 537, 582
SexAI ACCWGGT 1 cut(s) 193
SfaNI GCATC 3 cut(s) 140, 293, 529
SmaI CCCGGG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 556
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 112, 641
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 2 cut(s) 153, 349
SspMI CTAG 2 cut(s) 554, 718
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 6 cut(s) 193, 294, 295, 480, 576, 664
StyI CCWWGG 3 cut(s) 53, 219, 619
TaiI ACGT 1 cut(s) 456
TaqI TCGA 1 cut(s) 672
TasI AATT 2 cut(s) 112, 641
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 78, 360
TspMI CCCGGG 1 cut(s) 295
TspRI CASTG 1 cut(s) 408
Tth111I GACNNNGTC 1 cut(s) 195
XapI RAATTY 1 cut(s) 641
XceI RCATGY 1 cut(s) 525
XmaI CCCGGG 1 cut(s) 295
XspI CTAG 2 cut(s) 554, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.