Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026959

Physical Location & Seq

Genomic Coordinates Reverse (-)

4576193 .. 4578082

Gene Structure 1890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAAGAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCCATGGATGTTGGAGCTCTGTTCCTAAACATGCAGGCACTTATACACATATACATGGGTTTTGTTTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATCTTAAACGTGGAAGCTTCTCTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTCAAATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATTTCTGGAACTCGAGCATTAAAAAGAAGCTCATGTCTCACCATCATCACGGTCATCATCATCATCATCTCTCTTCCATGGCGAGTTTGCTCACAAACCTTCCTTATCACAATGGATTCAACCCTACTACAGTCGACGATGAAAGTTCAAGATTCATGTCCAATATCATCACAAACACTAACCCTAATTTCATCACTCCAAGCCATCTCTCTCTTCCTTCTCCTCATGTTATGACCCCATTGATGTTCCCAACCTCTAGAGAAGGAGATTTCAAGTTTCTAACCACAAACAACCCAAACCAATCTCATCACCATGATAATAACCATTACAACAACCTCGACATTTTGTCACCCACACCAACTATAAACAATCATCATCAACCTTCACTTTCTTCTTGTCCTCATGATAATAATCTCCAATGGCCAGCGTTACCAGATTTCCCAGCGAGTACCATTTCTGGTTTCCAAGAAACCCTTCAAGATTATGATGATGCTAATAAACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTATTATGTGGAGAAGTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCACAAGATCACGGCCTTTTTCTTCCCACCACGTACAACTTTCAAATGACTTCTACGAGTGATCATCAACATCATCATCGAGTGGACTCATACATCAATCACATGATCATACCATCATCATCCTCATCGTCGCCAATCTCTTGTGGACAGTACGTCATAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

367

Amino Acids

41.58

Weight (kDa)

7.46

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 70	4.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 84	2.9e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	76 - 119	2.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	79 - 124	4e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13890 AT3G13890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	477
AcoI	YGGCCR	2 cut(s)	97, 764
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	4 cut(s)	793, 918, 974, 1091
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	6 cut(s)	463, 492, 616, 821, 868, 983
AhdI	GACNNNNNGTC	2 cut(s)	688, 1091
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	801, 833
AluBI	AGCT	6 cut(s)	73, 114, 234, 251, 268, 373
AluI	AGCT	6 cut(s)	73, 114, 234, 251, 268, 373
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	384
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	3 cut(s)	97, 764, 952
ApeKI	GCWGC	2 cut(s)	18, 251
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	1 cut(s)	816
AsuHPI	GGTGA	6 cut(s)	45, 46, 374, 644, 684, 924
AvaI	CYCGRG	1 cut(s)	355
BalI	TGGCCA	2 cut(s)	99, 766
BanII	GRGCYC	2 cut(s)	116, 298
BarI	GAAGNNNNNNTAC	2 cut(s)	900, 932
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	5, 238
BccI	CCATC	5 cut(s)	189, 285, 393, 555, 1060
BceAI	ACGGC	1 cut(s)	967
BciT130I	CCWGG	1 cut(s)	318
BclI	TGATCA	2 cut(s)	1000, 1044
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	1 cut(s)	471
BisI	GCNGC	2 cut(s)	19, 252
BlsI	GCNGC	2 cut(s)	20, 253
BmcAI	AGTACT	1 cut(s)	918
Bme1390I	CCNGG	1 cut(s)	318
BmeRI	GACNNNNNGTC	2 cut(s)	688, 1091
BmeT110I	CYCGRG	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	823
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	888, 920
BpuEI	CTTGAG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	972
BsaBI	GATNNNNATC	1 cut(s)	753
BsaJI	CCNNGG	2 cut(s)	100, 420
Bse8I	GATNNNNATC	1 cut(s)	753
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	100, 420
BseGI	GGATG	2 cut(s)	110, 1058
BseJI	GATNNNNATC	1 cut(s)	753
BseRI	GAGGAG	3 cut(s)	231, 555, 919
BseXI	GCAGC	2 cut(s)	5, 238
BseYI	CCCAGC	1 cut(s)	784
BshFI	GGCC	3 cut(s)	99, 766, 954
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	99, 766, 954
BsoBI	CYCGRG	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	116, 298
Bsp143I	GATC	4 cut(s)	217, 946, 1000, 1044
Bsp19I	CCATGG	2 cut(s)	100, 420
BspANI	GGCC	3 cut(s)	99, 766, 954
BspHI	TCATGA	1 cut(s)	745
BssECI	CCNNGG	2 cut(s)	100, 420
BssMI	GATC	4 cut(s)	217, 946, 1000, 1044
BssT1I	CCWWGG	2 cut(s)	100, 420
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	395, 475, 1089
Bst6I	CTCTTC	3 cut(s)	32, 421, 561
BstBAI	YACGTR	1 cut(s)	972
BstC8I	GCNNGC	2 cut(s)	133, 768
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	2 cut(s)	100, 420
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	110, 1058
BstKTI	GATC	4 cut(s)	220, 949, 1003, 1047
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	4 cut(s)	217, 946, 1000, 1044
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	5, 238
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	99, 766, 954
BtgI	CCRYGG	2 cut(s)	100, 420
BtsCI	GGATG	2 cut(s)	110, 1058
Cac8I	GCNNGC	2 cut(s)	133, 768
CciI	TCATGA	1 cut(s)	745
Csp6I	GTAC	4 cut(s)	792, 917, 973, 1090
CviQI	GTAC	4 cut(s)	792, 917, 973, 1090
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	4 cut(s)	219, 948, 1002, 1046
DpnII	GATC	4 cut(s)	217, 946, 1000, 1044
DriI	GACNNNNNGTC	2 cut(s)	688, 1091
EaeI	YGGCCR	2 cut(s)	97, 764
Eam1104I	CTCTTC	3 cut(s)	32, 421, 561
Eam1105I	GACNNNNNGTC	2 cut(s)	688, 1091
EarI	CTCTTC	3 cut(s)	32, 421, 561
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	100, 420
Eco24I	GRGCYC	2 cut(s)	116, 298
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	355
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	114
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	100, 420
EcoT38I	GRGCYC	2 cut(s)	116, 298
ErhI	CCWWGG	2 cut(s)	100, 420
FalI	AAGNNNNNCTT	4 cut(s)	240, 272, 801, 833
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	2 cut(s)	1000, 1044
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	2 cut(s)	19, 252
FokI	GGATG	2 cut(s)	117, 1045
FriOI	GRGCYC	2 cut(s)	116, 298
Fsp4HI	GCNGC	2 cut(s)	19, 252
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	2 cut(s)	19, 252
GsaI	CCCAGC	1 cut(s)	788
HaeIII	GGCC	3 cut(s)	99, 766, 954
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	3 cut(s)	459, 495, 1025
HphI	GGTGA	6 cut(s)	45, 46, 374, 644, 684, 924
Hpy166II	GTNNAC	3 cut(s)	478, 1024, 1085
Hpy188III	TCNNGA	8 cut(s)	245, 340, 349, 492, 600, 746, 821, 905
Hpy8I	GTNNAC	3 cut(s)	478, 1024, 1085
Hpy99I	CGWCG	2 cut(s)	482, 1072
HpyAV	CCTTC	6 cut(s)	452, 570, 599, 735, 827, 902
HpyCH4III	ACNGT	3 cut(s)	395, 475, 1089
HpyCH4IV	ACGT	4 cut(s)	226, 849, 971, 1092
HpyCH4V	TGCA	3 cut(s)	21, 131, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	4 cut(s)	226, 849, 971, 1092
Ksp22I	TGATCA	2 cut(s)	1000, 1044
Kzo9I	GATC	4 cut(s)	217, 946, 1000, 1044
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	2 cut(s)	5, 238
LweI	GCATC	1 cut(s)	823
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	4 cut(s)	226, 849, 971, 1092
MaeIII	GTNAC	5 cut(s)	51, 284, 690, 771, 856
MalI	GATC	4 cut(s)	219, 948, 1002, 1046
MboI	GATC	4 cut(s)	217, 946, 1000, 1044
MboII	GAAGA	9 cut(s)	49, 71, 74, 333, 408, 548, 726, 915, 953
MhlI	GDGCHC	2 cut(s)	116, 298
MlsI	TGGCCA	2 cut(s)	99, 766
MluCI	AATT	6 cut(s)	88, 202, 300, 343, 529, 936
MluNI	TGGCCA	2 cut(s)	99, 766
MlyI	GAGTC	1 cut(s)	1019
MmeI	TCCRAC	1 cut(s)	89
Mox20I	TGGCCA	2 cut(s)	99, 766
MroXI	GAANNNNTTC	1 cut(s)	816
MscI	TGGCCA	2 cut(s)	99, 766
MseI	TTAA	4 cut(s)	191, 222, 363, 1102
MslI	CAYNNNNRTG	2 cut(s)	150, 654
Msp20I	TGGCCA	2 cut(s)	99, 766
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	302
NcoI	CCATGG	2 cut(s)	100, 420
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	4 cut(s)	217, 946, 1000, 1044
NmuCI	GTSAC	3 cut(s)	51, 690, 856
NspI	RCATGY	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	355
PagI	TCATGA	1 cut(s)	745
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	816
PfeI	GAWTC	2 cut(s)	459, 495
PkrI	GCNGC	2 cut(s)	20, 253
PleI	GAGTC	1 cut(s)	1019
PpsI	GAGTC	1 cut(s)	1019
Ppu21I	YACGTR	1 cut(s)	972
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	316
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	316
PspXI	VCTCGAGB	1 cut(s)	355
RsaI	GTAC	4 cut(s)	793, 918, 974, 1091
RsaNI	GTAC	4 cut(s)	792, 917, 973, 1090
RseI	CAYNNNNRTG	2 cut(s)	150, 654
SacI	GAGCTC	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	476
SaqAI	TTAA	4 cut(s)	191, 222, 363, 1102
SatI	GCNGC	2 cut(s)	19, 252
Sau3AI	GATC	4 cut(s)	217, 946, 1000, 1044
ScaI	AGTACT	1 cut(s)	918
SchI	GAGTC	1 cut(s)	1019
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	2 cut(s)	116, 298
SfaNI	GCATC	1 cut(s)	823
SfcI	CTRYAG	1 cut(s)	471
Sfr274I	CTCGAG	1 cut(s)	355
SlaI	CTCGAG	1 cut(s)	355
SmiMI	CAYNNNNRTG	2 cut(s)	150, 654
SmlI	CTYRAG	2 cut(s)	243, 355
SmoI	CTYRAG	2 cut(s)	243, 355
Sse9I	AATT	6 cut(s)	88, 202, 300, 343, 529, 936
SspMI	CTAG	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	2 cut(s)	100, 420
TaaI	ACNGT	3 cut(s)	395, 475, 1089
TaiI	ACGT	4 cut(s)	229, 852, 974, 1095
TaqI	TCGA	5 cut(s)	356, 477, 681, 906, 1018
TasI	AATT	6 cut(s)	88, 202, 300, 343, 529, 936
TatI	WGTACW	1 cut(s)	916
TfiI	GAWTC	2 cut(s)	459, 495
Tru1I	TTAA	4 cut(s)	191, 222, 363, 1102
Tru9I	TTAA	4 cut(s)	191, 222, 363, 1102
TseFI	GTSAC	3 cut(s)	51, 690, 856
TseI	GCWGC	2 cut(s)	18, 251
Tsp45I	GTSAC	3 cut(s)	51, 690, 856
TspDTI	ATGAA	4 cut(s)	81, 487, 498, 523
XapI	RAATTY	1 cut(s)	343
XbaI	TCTAGA	1 cut(s)	599
XceI	RCATGY	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	355
XmiI	GTMKAC	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	816
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.