early flowering
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G21320 |
| fragaria_vesca | FvH4_6g32780 |
| prunus_persica | Prupe.3G054300_v2.0.a1 Prupe.3G054300_v2.0.a1 Prupe.3G054300_v2.0.a1 Prupe.3G054300_v2.0.a1 Prupe.3G054300_v2.0.a1 Prupe.3G054300_v2.0.a1 Prupe.3G054300_v2.0.a1 Prupe.3G054300_v2.0.a1 Prupe.3G054300_v2.0.a1 Prupe.3G054300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0141891 |
| rosa_laevigata | RLG00000019940 |
| rosa_multiflora | Rmu_sc0002928.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00103730 |
| rosa_rugosa | Rorug02G0369100 Rorug02G0369100 Rorug02G0369100 |
| rosa_samantha | Rh2AG421300 Rh2BG431600 Rh2CG408600 Rh2DG441700 |
| rosa_wichuraiana | Rw2G034540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1124 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1187 |
| AccII | CGCG | 2 cut(s) | 1268, 1515 |
| AciI | CCGC | 2 cut(s) | 480, 932 |
| AclI | AACGTT | 1 cut(s) | 538 |
| AclWI | GGATC | 4 cut(s) | 334, 431, 517, 1577 |
| AcoI | YGGCCR | 2 cut(s) | 1055, 1189 |
| AcuI | CTGAAG | 2 cut(s) | 1002, 1149 |
| AfaI | GTAC | 5 cut(s) | 374, 475, 901, 978, 1487 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1079, 1142, 1187 |
| AgsI | TTSAA | 9 cut(s) | 357, 672, 836, 872, 939, 1310, 1413, 1439, 1542 |
| AjnI | CCWGG | 2 cut(s) | 1078, 1141 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1080, 1112 |
| AluBI | AGCT | 9 cut(s) | 289, 393, 814, 880, 922, 1012, 1066, 1248, 1409 |
| AluI | AGCT | 9 cut(s) | 289, 393, 814, 880, 922, 1012, 1066, 1248, 1409 |
| Alw21I | GWGCWC | 1 cut(s) | 816 |
| Alw26I | GTCTC | 9 cut(s) | 96, 123, 130, 201, 230, 414, 570, 1199, 1374 |
| AlwI | GGATC | 4 cut(s) | 334, 431, 517, 1577 |
| Ama87I | CYCGRG | 1 cut(s) | 1202 |
| AoxI | GGCC | 3 cut(s) | 85, 1055, 1189 |
| ApeKI | GCWGC | 1 cut(s) | 1562 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1443 |
| AspLEI | GCGC | 1 cut(s) | 1517 |
| AspS9I | GGNCC | 2 cut(s) | 236, 1145 |
| AsuC2I | CCSGG | 2 cut(s) | 495, 799 |
| AsuHPI | GGTGA | 2 cut(s) | 249, 752 |
| AvaI | CYCGRG | 1 cut(s) | 1202 |
| AvaII | GGWCC | 2 cut(s) | 236, 1145 |
| BalI | TGGCCA | 2 cut(s) | 1057, 1191 |
| BanII | GRGCYC | 1 cut(s) | 816 |
| BauI | CACGAG | 1 cut(s) | 1040 |
| Bbv12I | GWGCWC | 1 cut(s) | 816 |
| BbvI | GCAGC | 1 cut(s) | 1549 |
| BccI | CCATC | 5 cut(s) | 98, 227, 835, 1308, 1479 |
| BceAI | ACGGC | 1 cut(s) | 1511 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1021, 1055 |
| BciT130I | CCWGG | 2 cut(s) | 1080, 1143 |
| BclI | TGATCA | 1 cut(s) | 774 |
| BcnI | CCSGG | 2 cut(s) | 495, 799 |
| BcoDI | GTCTC | 9 cut(s) | 96, 123, 130, 201, 230, 414, 570, 1199, 1374 |
| BfaI | CTAG | 2 cut(s) | 351, 477 |
| BfmI | CTRYAG | 1 cut(s) | 1458 |
| BglII | AGATCT | 1 cut(s) | 789 |
| BisI | GCNGC | 2 cut(s) | 933, 1563 |
| BlsI | GCNGC | 2 cut(s) | 934, 1564 |
| Bme1390I | CCNGG | 4 cut(s) | 495, 799, 1080, 1143 |
| Bme18I | GGWCC | 2 cut(s) | 236, 1145 |
| BmeT110I | CYCGRG | 1 cut(s) | 1202 |
| BmgT120I | GGNCC | 2 cut(s) | 236, 1145 |
| BmiI | GGNNCC | 2 cut(s) | 1179, 1220 |
| BmrFI | CCNGG | 4 cut(s) | 495, 799, 1080, 1143 |
| BmsI | GCATC | 2 cut(s) | 719, 1497 |
| BpuEI | CTTGAG | 1 cut(s) | 362 |
| BpuMI | CCSGG | 2 cut(s) | 495, 799 |
| BsaI | GGTCTC | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 2 cut(s) | 53, 650 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 25, 55, 492, 522 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1079, 1142, 1187 |
| Bse1I | ACTGG | 2 cut(s) | 79, 1181 |
| Bse3DI | GCAATG | 1 cut(s) | 933 |
| BseBI | CCWGG | 2 cut(s) | 1080, 1143 |
| BseDI | CCNNGG | 2 cut(s) | 53, 650 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1079, 1142, 1187 |
| BseMI | GCAATG | 1 cut(s) | 933 |
| BseMII | CTCAG | 5 cut(s) | 441, 600, 951, 1385, 1617 |
| BseNI | ACTGG | 2 cut(s) | 79, 1181 |
| BseRI | GAGGAG | 3 cut(s) | 96, 513, 1065 |
| BseXI | GCAGC | 1 cut(s) | 1549 |
| Bsh1236I | CGCG | 2 cut(s) | 1268, 1515 |
| BshFI | GGCC | 3 cut(s) | 87, 1057, 1191 |
| BsiHKAI | GWGCWC | 1 cut(s) | 816 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1202 |
| BsiSI | CCGG | 2 cut(s) | 495, 798 |
| BslFI | GGGAC | 2 cut(s) | 123, 1613 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1079, 1142, 1187 |
| BsmAI | GTCTC | 9 cut(s) | 96, 123, 130, 201, 230, 414, 570, 1199, 1374 |
| BsmBI | CGTCTC | 2 cut(s) | 130, 230 |
| BsmFI | GGGAC | 2 cut(s) | 123, 1613 |
| BsnI | GGCC | 3 cut(s) | 87, 1057, 1191 |
| Bso31I | GGTCTC | 1 cut(s) | 570 |
| BsoBI | CYCGRG | 1 cut(s) | 1202 |
| Bsp1286I | GDGCHC | 1 cut(s) | 816 |
| Bsp143I | GATC | 7 cut(s) | 326, 436, 522, 774, 789, 1569, 1606 |
| BspACI | CCGC | 2 cut(s) | 480, 932 |
| BspANI | GGCC | 3 cut(s) | 87, 1057, 1191 |
| BspCNI | CTCAG | 5 cut(s) | 440, 601, 952, 1384, 1616 |
| BspFNI | CGCG | 2 cut(s) | 1268, 1515 |
| BspLI | GGNNCC | 2 cut(s) | 1179, 1220 |
| BspPI | GGATC | 4 cut(s) | 334, 431, 517, 1577 |
| BspTNI | GGTCTC | 1 cut(s) | 570 |
| BsrDI | GCAATG | 1 cut(s) | 933 |
| BsrI | ACTGG | 2 cut(s) | 79, 1181 |
| BssECI | CCNNGG | 2 cut(s) | 53, 650 |
| BssMI | GATC | 7 cut(s) | 326, 436, 522, 774, 789, 1569, 1606 |
| BssSI | CACGAG | 1 cut(s) | 1040 |
| BssT1I | CCWWGG | 1 cut(s) | 53 |
| Bst2BI | CACGAG | 1 cut(s) | 1040 |
| Bst2UI | CCWGG | 2 cut(s) | 1080, 1143 |
| Bst4CI | ACNGT | 3 cut(s) | 1121, 1279, 1388 |
| Bst6I | CTCTTC | 3 cut(s) | 73, 133, 204 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1507 |
| BstC8I | GCNNGC | 1 cut(s) | 924 |
| BstDEI | CTNAG | 7 cut(s) | 345, 427, 519, 609, 960, 1371, 1603 |
| BstFNI | CGCG | 2 cut(s) | 1268, 1515 |
| BstHHI | GCGC | 1 cut(s) | 1517 |
| BstKTI | GATC | 7 cut(s) | 329, 439, 525, 777, 792, 1572, 1609 |
| BstMAI | GTCTC | 9 cut(s) | 96, 123, 130, 201, 230, 414, 570, 1199, 1374 |
| BstMBI | GATC | 7 cut(s) | 326, 436, 522, 774, 789, 1569, 1606 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 932, 1063, 1498, 1507, 1523 |
| BstNI | CCWGG | 2 cut(s) | 1080, 1143 |
| BstSCI | CCNGG | 4 cut(s) | 493, 797, 1078, 1141 |
| BstSFI | CTRYAG | 1 cut(s) | 1458 |
| BstUI | CGCG | 2 cut(s) | 1268, 1515 |
| BstV1I | GCAGC | 1 cut(s) | 1549 |
| BstX2I | RGATCY | 4 cut(s) | 436, 522, 789, 1569 |
| BstYI | RGATCY | 4 cut(s) | 436, 522, 789, 1569 |
| BsuRI | GGCC | 3 cut(s) | 87, 1057, 1191 |
| BtsIMutI | CAGTG | 2 cut(s) | 957, 1393 |
| Cac8I | GCNNGC | 1 cut(s) | 924 |
| CfoI | GCGC | 1 cut(s) | 1517 |
| Cfr13I | GGNCC | 2 cut(s) | 236, 1145 |
| Csp6I | GTAC | 5 cut(s) | 373, 474, 900, 977, 1486 |
| CviAII | CATG | 6 cut(s) | 62, 896, 1149, 1174, 1336, 1397 |
| CviQI | GTAC | 5 cut(s) | 373, 474, 900, 977, 1486 |
| DdeI | CTNAG | 7 cut(s) | 345, 427, 519, 609, 960, 1371, 1603 |
| DpnI | GATC | 7 cut(s) | 328, 438, 524, 776, 791, 1571, 1608 |
| DpnII | GATC | 7 cut(s) | 326, 436, 522, 774, 789, 1569, 1606 |
| DraI | TTTAAA | 1 cut(s) | 1362 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1124 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1124 |
| EaeI | YGGCCR | 2 cut(s) | 1055, 1189 |
| Eam1104I | CTCTTC | 3 cut(s) | 73, 133, 204 |
| EarI | CTCTTC | 3 cut(s) | 73, 133, 204 |
| Ecl136II | GAGCTC | 1 cut(s) | 814 |
| Eco130I | CCWWGG | 1 cut(s) | 53 |
| Eco147I | AGGCCT | 1 cut(s) | 87 |
| Eco24I | GRGCYC | 1 cut(s) | 816 |
| Eco31I | GGTCTC | 1 cut(s) | 570 |
| Eco47I | GGWCC | 2 cut(s) | 236, 1145 |
| Eco53kI | GAGCTC | 1 cut(s) | 814 |
| Eco57I | CTGAAG | 2 cut(s) | 1002, 1149 |
| Eco88I | CYCGRG | 1 cut(s) | 1202 |
| EcoICRI | GAGCTC | 1 cut(s) | 814 |
| EcoRII | CCWGG | 2 cut(s) | 1078, 1141 |
| EcoT14I | CCWWGG | 1 cut(s) | 53 |
| EcoT38I | GRGCYC | 1 cut(s) | 816 |
| ErhI | CCWWGG | 1 cut(s) | 53 |
| Esp3I | CGTCTC | 2 cut(s) | 130, 230 |
| FaeI | CATG | 6 cut(s) | 65, 899, 1152, 1177, 1339, 1400 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 697, 729, 1393, 1425 |
| FaqI | GGGAC | 2 cut(s) | 123, 1613 |
| FatI | CATG | 6 cut(s) | 61, 895, 1148, 1173, 1335, 1396 |
| FauNDI | CATATG | 2 cut(s) | 999, 1611 |
| FbaI | TGATCA | 1 cut(s) | 774 |
| Fnu4HI | GCNGC | 2 cut(s) | 933, 1563 |
| FriOI | GRGCYC | 1 cut(s) | 816 |
| Fsp4HI | GCNGC | 2 cut(s) | 933, 1563 |
| FspBI | CTAG | 2 cut(s) | 351, 477 |
| GlaI | GCGC | 1 cut(s) | 1516 |
| GluI | GCNGC | 2 cut(s) | 933, 1563 |
| HaeIII | GGCC | 3 cut(s) | 87, 1057, 1191 |
| HapII | CCGG | 2 cut(s) | 495, 798 |
| HhaI | GCGC | 1 cut(s) | 1517 |
| Hin1II | CATG | 6 cut(s) | 65, 899, 1152, 1177, 1339, 1400 |
| Hin6I | GCGC | 1 cut(s) | 1515 |
| HinP1I | GCGC | 1 cut(s) | 1515 |
| HincII | GTYRAC | 1 cut(s) | 1282 |
| HindII | GTYRAC | 1 cut(s) | 1282 |
| HindIII | AAGCTT | 2 cut(s) | 878, 1010 |
| HpaII | CCGG | 2 cut(s) | 495, 798 |
| HphI | GGTGA | 2 cut(s) | 249, 752 |
| Hpy166II | GTNNAC | 4 cut(s) | 491, 659, 1282, 1418 |
| Hpy188I | TCNGA | 7 cut(s) | 156, 172, 430, 535, 1117, 1555, 1606 |
| Hpy188III | TCNNGA | 7 cut(s) | 379, 869, 992, 1042, 1204, 1373, 1586 |
| Hpy8I | GTNNAC | 4 cut(s) | 491, 659, 1282, 1418 |
| HpyAV | CCTTC | 4 cut(s) | 159, 1032, 1167, 1180 |
| HpyCH4III | ACNGT | 3 cut(s) | 1121, 1279, 1388 |
| HpyCH4IV | ACGT | 2 cut(s) | 136, 538 |
| HpyCH4V | TGCA | 4 cut(s) | 683, 710, 926, 1565 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 932, 1063, 1498, 1507, 1523 |
| HpyF3I | CTNAG | 7 cut(s) | 345, 427, 519, 609, 960, 1371, 1603 |
| HpySE526I | ACGT | 2 cut(s) | 136, 538 |
| Hsp92II | CATG | 6 cut(s) | 65, 899, 1152, 1177, 1339, 1400 |
| HspAI | GCGC | 1 cut(s) | 1515 |
| Ksp22I | TGATCA | 1 cut(s) | 774 |
| Kzo9I | GATC | 7 cut(s) | 326, 436, 522, 774, 789, 1569, 1606 |
| LmnI | GCTCC | 1 cut(s) | 819 |
| Lsp1109I | GCAGC | 1 cut(s) | 1549 |
| LweI | GCATC | 2 cut(s) | 719, 1497 |
| MaeI | CTAG | 2 cut(s) | 351, 477 |
| MaeII | ACGT | 2 cut(s) | 136, 538 |
| MaeIII | GTNAC | 4 cut(s) | 334, 459, 1042, 1388 |
| MalI | GATC | 7 cut(s) | 328, 438, 524, 776, 791, 1571, 1608 |
| MboI | GATC | 7 cut(s) | 326, 436, 522, 774, 789, 1569, 1606 |
| MflI | RGATCY | 4 cut(s) | 436, 522, 789, 1569 |
| MhlI | GDGCHC | 1 cut(s) | 816 |
| MlsI | TGGCCA | 2 cut(s) | 1057, 1191 |
| MluCI | AATT | 5 cut(s) | 36, 98, 307, 467, 1537 |
| MluNI | TGGCCA | 2 cut(s) | 1057, 1191 |
| MlyI | GAGTC | 3 cut(s) | 698, 1039, 1595 |
| MmeI | TCCRAC | 1 cut(s) | 179 |
| Mox20I | TGGCCA | 2 cut(s) | 1057, 1191 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1443 |
| MscI | TGGCCA | 2 cut(s) | 1057, 1191 |
| MseI | TTAA | 5 cut(s) | 405, 615, 882, 1361, 1521 |
| MslI | CAYNNNNRTG | 1 cut(s) | 66 |
| Msp20I | TGGCCA | 2 cut(s) | 1057, 1191 |
| MspI | CCGG | 2 cut(s) | 495, 798 |
| MspR9I | CCNGG | 4 cut(s) | 495, 799, 1080, 1143 |
| MvaI | CCWGG | 2 cut(s) | 1080, 1143 |
| MvnI | CGCG | 2 cut(s) | 1268, 1515 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 932, 1063, 1498, 1507, 1523 |
| NciI | CCSGG | 2 cut(s) | 495, 799 |
| NdeI | CATATG | 2 cut(s) | 999, 1611 |
| NdeII | GATC | 7 cut(s) | 326, 436, 522, 774, 789, 1569, 1606 |
| NlaIII | CATG | 6 cut(s) | 65, 899, 1152, 1177, 1339, 1400 |
| NlaIV | GGNNCC | 2 cut(s) | 1179, 1220 |
| NmeAIII | GCCGAG | 1 cut(s) | 631 |
| NmuCI | GTSAC | 3 cut(s) | 459, 1042, 1388 |
| PaeR7I | CTCGAG | 1 cut(s) | 1202 |
| PceI | AGGCCT | 1 cut(s) | 87 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1443 |
| PfeI | GAWTC | 8 cut(s) | 173, 247, 398, 964, 1112, 1196, 1376, 1556 |
| PflFI | GACNNNGTC | 1 cut(s) | 1149 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1187 |
| PfoI | TCCNGGA | 2 cut(s) | 1078, 1141 |
| PkrI | GCNGC | 2 cut(s) | 934, 1564 |
| PleI | GAGTC | 3 cut(s) | 697, 1039, 1595 |
| PpsI | GAGTC | 3 cut(s) | 697, 1039, 1595 |
| Psp124BI | GAGCTC | 1 cut(s) | 816 |
| Psp1406I | AACGTT | 1 cut(s) | 538 |
| Psp6I | CCWGG | 2 cut(s) | 1078, 1141 |
| PspGI | CCWGG | 2 cut(s) | 1078, 1141 |
| PspN4I | GGNNCC | 2 cut(s) | 1179, 1220 |
| PspPI | GGNCC | 2 cut(s) | 236, 1145 |
| PsuI | RGATCY | 4 cut(s) | 436, 522, 789, 1569 |
| PsyI | GACNNNGTC | 1 cut(s) | 1149 |
| RsaI | GTAC | 5 cut(s) | 374, 475, 901, 978, 1487 |
| RsaNI | GTAC | 5 cut(s) | 373, 474, 900, 977, 1486 |
| RseI | CAYNNNNRTG | 1 cut(s) | 66 |
| SacI | GAGCTC | 1 cut(s) | 816 |
| SaqAI | TTAA | 5 cut(s) | 405, 615, 882, 1361, 1521 |
| SatI | GCNGC | 2 cut(s) | 933, 1563 |
| Sau3AI | GATC | 7 cut(s) | 326, 436, 522, 774, 789, 1569, 1606 |
| Sau96I | GGNCC | 2 cut(s) | 236, 1145 |
| SchI | GAGTC | 3 cut(s) | 698, 1039, 1595 |
| ScrFI | CCNGG | 4 cut(s) | 495, 799, 1080, 1143 |
| SduI | GDGCHC | 1 cut(s) | 816 |
| SfaNI | GCATC | 2 cut(s) | 719, 1497 |
| SfcI | CTRYAG | 1 cut(s) | 1458 |
| Sfr274I | CTCGAG | 1 cut(s) | 1202 |
| SinI | GGWCC | 2 cut(s) | 236, 1145 |
| SlaI | CTCGAG | 1 cut(s) | 1202 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 66 |
| SmlI | CTYRAG | 2 cut(s) | 377, 1202 |
| SmoI | CTYRAG | 2 cut(s) | 377, 1202 |
| Sse9I | AATT | 5 cut(s) | 36, 98, 307, 467, 1537 |
| SseBI | AGGCCT | 1 cut(s) | 87 |
| SsiI | CCGC | 2 cut(s) | 480, 932 |
| SspMI | CTAG | 2 cut(s) | 351, 477 |
| SstI | GAGCTC | 1 cut(s) | 816 |
| StuI | AGGCCT | 1 cut(s) | 87 |
| StyD4I | CCNGG | 4 cut(s) | 493, 797, 1078, 1141 |
| StyI | CCWWGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 3 cut(s) | 1121, 1279, 1388 |
| TaiI | ACGT | 2 cut(s) | 139, 541 |
| TaqI | TCGA | 1 cut(s) | 1203 |
| TasI | AATT | 5 cut(s) | 36, 98, 307, 467, 1537 |
| TatI | WGTACW | 2 cut(s) | 473, 1485 |
| TauI | GCSGC | 1 cut(s) | 935 |
| TfiI | GAWTC | 8 cut(s) | 173, 247, 398, 964, 1112, 1196, 1376, 1556 |
| Tru1I | TTAA | 5 cut(s) | 405, 615, 882, 1361, 1521 |
| Tru9I | TTAA | 5 cut(s) | 405, 615, 882, 1361, 1521 |
| TscAI | CASTG | 2 cut(s) | 964, 1393 |
| TseFI | GTSAC | 3 cut(s) | 459, 1042, 1388 |
| TseI | GCWGC | 1 cut(s) | 1562 |
| Tsp45I | GTSAC | 3 cut(s) | 459, 1042, 1388 |
| TspDTI | ATGAA | 9 cut(s) | 26, 33, 50, 564, 593, 636, 1016, 1162, 1570 |
| TspGWI | ACGGA | 1 cut(s) | 1565 |
| TspRI | CASTG | 2 cut(s) | 964, 1393 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1149 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1187 |
| VpaK11BI | GGWCC | 2 cut(s) | 236, 1145 |
| XhoI | CTCGAG | 1 cut(s) | 1202 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1443 |
| XspI | CTAG | 2 cut(s) | 351, 477 |