AT3G21320

early flowering

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
7498812 .. 7501888
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21320.1

Sequence Viewer

Length: 1623 bp
ATGGGAGGAATGAAAGATGAAGCAAAGAGGATAACAATTCCTCCATTGTTTCCAAGGGTTCATGTCAATGATACTGGAAGAGGAGGCCTGTCTCAACAATTTGATGGCAAAACAATGTCTCTCGTCTCTTCTAAACGTCCCAATCTTCCTTCTCCGACCAACAACATATCTGATTCTCTTTCCACTTTCTCTTTGTCTCTTCCTCCACCACCAAACAATGCCCGTCTCATTGATGGACCTGAAAAGAATCAGTTTTCACCAATCTACAACACAAAGTTTGAGGGGAAGCTGAATAAAAAAGGCATAAATTATACAAGTCCTAAAGGATCATCAGTTACTAATACTAAGCCTAGTTCAATAAAACAAAATGAGTACCTCAAGAACCTTACCAGCTTGGATTCTATTAAGTCTCCTATTGTTATACACTCAGAAATAGATCCACAAGCAAACACAGATTTGTCACTCCAATTTTGTACTAGCGGTAGCAGTAAACCCGGAGGAGAGGCTGTTGTTGGTTCTAAGATCCTTTTGTCAGAACGTTTGGAAGATGAAAACCAGAATGGGTCTCCCAATGTGATGAAAACTCAATCATATAGAAGAAACTTTGCTGAGTTTAACAATGAAACTCAAAAGAAGCCCAAAACTCTGCCTCGGCGTGAACAAGTTGCTTCAAACTGCTCTGCAATAGAGTCTTTGTCTGGTATAAGTGCATCTTCTTATGATATTGCCAGAGTGATTGGTGAAAAGAGGTTTTGGAAGATGAGAACATATATGATCAATCAGCAAAAGATCTTTGCCGGGCAAGTATTTGAGCTCCATAGACTGATAATGGTTCAAAAGATGGTTGCGAAGTCGCCAAACTTGTTTCTTGAAAGTAAGCTTAATGGTGTCAAACATGGTACAATGAGGTCATCACATCAGCTTGCAATGGCGGCTTCAAAGGTTAGAAAGCCAAACACTGAGAATCACAAACCTGTACCTGAAGAATATCCAGAGCATATGAAACCAAAGCTTCCTCTACCTTCCATAAGCAAAGAACTCGTGACTCCTATTTGGCCACAACAGCTACTTCCTCCTCCTGGAAACCAATGGTTAGTTCCTGTAATAACTGATTCAGACGGTCTGGTCTATAAACCATTTCCAGGACCATGTCCTCCTTCTTCTTCAGCCTTCATGGTTCCAGTTTATGGCCAAGATTCACTCGAGACACCATTCAGGTTCCCTGTTTCTTCTCCATTCAGCCACAGCTACTTCCCACCTCCTAACGCGAGGACAACAGTTGACCAAACAAACCCGTTTGGTCAGTTTCAAAGATGGTCTAACACATCAAGCCACATGACACAAGCCATTCCATTTTCTTTAAAGAAGTCTCAGGAATCTAATGACAGTGACATACATGGAAGCACAGCTTCAAGTCCACCAGAGAAGCATAAACTTGAAGTGCTTCCTCTGTTTCCTACAGAGCCTACCCATCAAACTGATGAGTACAAGCAGAAACAGCAACCGATGCTTCGCGCCATTAAAGCCGTTCCTCATAATTCAACATCTGCCTCTGAATCTGCTGCAAGGATCTTCCGTTTCATTCAGGAAGAAAGGAGGGACTCAGATCATATGATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

540

Amino Acids

60.19

Weight (kDa)

9.51

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1124
AccB7I CCANNNNNTGG 1 cut(s) 1187
AccII CGCG 2 cut(s) 1268, 1515
AciI CCGC 2 cut(s) 480, 932
AclI AACGTT 1 cut(s) 538
AclWI GGATC 4 cut(s) 334, 431, 517, 1577
AcoI YGGCCR 2 cut(s) 1055, 1189
AcuI CTGAAG 2 cut(s) 1002, 1149
AfaI GTAC 5 cut(s) 374, 475, 901, 978, 1487
AfiI CCNNNNNNNGG 3 cut(s) 1079, 1142, 1187
AgsI TTSAA 9 cut(s) 357, 672, 836, 872, 939, 1310, 1413, 1439, 1542
AjnI CCWGG 2 cut(s) 1078, 1141
AjuI GAANNNNNNNTTGG 2 cut(s) 1080, 1112
AluBI AGCT 9 cut(s) 289, 393, 814, 880, 922, 1012, 1066, 1248, 1409
AluI AGCT 9 cut(s) 289, 393, 814, 880, 922, 1012, 1066, 1248, 1409
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 9 cut(s) 96, 123, 130, 201, 230, 414, 570, 1199, 1374
AlwI GGATC 4 cut(s) 334, 431, 517, 1577
Ama87I CYCGRG 1 cut(s) 1202
AoxI GGCC 3 cut(s) 85, 1055, 1189
ApeKI GCWGC 1 cut(s) 1562
Asp700I GAANNNNTTC 1 cut(s) 1443
AspLEI GCGC 1 cut(s) 1517
AspS9I GGNCC 2 cut(s) 236, 1145
AsuC2I CCSGG 2 cut(s) 495, 799
AsuHPI GGTGA 2 cut(s) 249, 752
AvaI CYCGRG 1 cut(s) 1202
AvaII GGWCC 2 cut(s) 236, 1145
BalI TGGCCA 2 cut(s) 1057, 1191
BanII GRGCYC 1 cut(s) 816
BauI CACGAG 1 cut(s) 1040
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 1 cut(s) 1549
BccI CCATC 5 cut(s) 98, 227, 835, 1308, 1479
BceAI ACGGC 1 cut(s) 1511
BcgI CGANNNNNNTGC 2 cut(s) 1021, 1055
BciT130I CCWGG 2 cut(s) 1080, 1143
BclI TGATCA 1 cut(s) 774
BcnI CCSGG 2 cut(s) 495, 799
BcoDI GTCTC 9 cut(s) 96, 123, 130, 201, 230, 414, 570, 1199, 1374
BfaI CTAG 2 cut(s) 351, 477
BfmI CTRYAG 1 cut(s) 1458
BglII AGATCT 1 cut(s) 789
BisI GCNGC 2 cut(s) 933, 1563
BlsI GCNGC 2 cut(s) 934, 1564
Bme1390I CCNGG 4 cut(s) 495, 799, 1080, 1143
Bme18I GGWCC 2 cut(s) 236, 1145
BmeT110I CYCGRG 1 cut(s) 1202
BmgT120I GGNCC 2 cut(s) 236, 1145
BmiI GGNNCC 2 cut(s) 1179, 1220
BmrFI CCNGG 4 cut(s) 495, 799, 1080, 1143
BmsI GCATC 2 cut(s) 719, 1497
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 495, 799
BsaI GGTCTC 1 cut(s) 570
BsaJI CCNNGG 2 cut(s) 53, 650
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 492, 522
Bsc4I CCNNNNNNNGG 3 cut(s) 1079, 1142, 1187
Bse1I ACTGG 2 cut(s) 79, 1181
Bse3DI GCAATG 1 cut(s) 933
BseBI CCWGG 2 cut(s) 1080, 1143
BseDI CCNNGG 2 cut(s) 53, 650
BseLI CCNNNNNNNGG 3 cut(s) 1079, 1142, 1187
BseMI GCAATG 1 cut(s) 933
BseMII CTCAG 5 cut(s) 441, 600, 951, 1385, 1617
BseNI ACTGG 2 cut(s) 79, 1181
BseRI GAGGAG 3 cut(s) 96, 513, 1065
BseXI GCAGC 1 cut(s) 1549
Bsh1236I CGCG 2 cut(s) 1268, 1515
BshFI GGCC 3 cut(s) 87, 1057, 1191
BsiHKAI GWGCWC 1 cut(s) 816
BsiHKCI CYCGRG 1 cut(s) 1202
BsiSI CCGG 2 cut(s) 495, 798
BslFI GGGAC 2 cut(s) 123, 1613
BslI CCNNNNNNNGG 3 cut(s) 1079, 1142, 1187
BsmAI GTCTC 9 cut(s) 96, 123, 130, 201, 230, 414, 570, 1199, 1374
BsmBI CGTCTC 2 cut(s) 130, 230
BsmFI GGGAC 2 cut(s) 123, 1613
BsnI GGCC 3 cut(s) 87, 1057, 1191
Bso31I GGTCTC 1 cut(s) 570
BsoBI CYCGRG 1 cut(s) 1202
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 7 cut(s) 326, 436, 522, 774, 789, 1569, 1606
BspACI CCGC 2 cut(s) 480, 932
BspANI GGCC 3 cut(s) 87, 1057, 1191
BspCNI CTCAG 5 cut(s) 440, 601, 952, 1384, 1616
BspFNI CGCG 2 cut(s) 1268, 1515
BspLI GGNNCC 2 cut(s) 1179, 1220
BspPI GGATC 4 cut(s) 334, 431, 517, 1577
BspTNI GGTCTC 1 cut(s) 570
BsrDI GCAATG 1 cut(s) 933
BsrI ACTGG 2 cut(s) 79, 1181
BssECI CCNNGG 2 cut(s) 53, 650
BssMI GATC 7 cut(s) 326, 436, 522, 774, 789, 1569, 1606
BssSI CACGAG 1 cut(s) 1040
BssT1I CCWWGG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 1040
Bst2UI CCWGG 2 cut(s) 1080, 1143
Bst4CI ACNGT 3 cut(s) 1121, 1279, 1388
Bst6I CTCTTC 3 cut(s) 73, 133, 204
BstAPI GCANNNNNTGC 1 cut(s) 1507
BstC8I GCNNGC 1 cut(s) 924
BstDEI CTNAG 7 cut(s) 345, 427, 519, 609, 960, 1371, 1603
BstFNI CGCG 2 cut(s) 1268, 1515
BstHHI GCGC 1 cut(s) 1517
BstKTI GATC 7 cut(s) 329, 439, 525, 777, 792, 1572, 1609
BstMAI GTCTC 9 cut(s) 96, 123, 130, 201, 230, 414, 570, 1199, 1374
BstMBI GATC 7 cut(s) 326, 436, 522, 774, 789, 1569, 1606
BstMWI GCNNNNNNNGC 5 cut(s) 932, 1063, 1498, 1507, 1523
BstNI CCWGG 2 cut(s) 1080, 1143
BstSCI CCNGG 4 cut(s) 493, 797, 1078, 1141
BstSFI CTRYAG 1 cut(s) 1458
BstUI CGCG 2 cut(s) 1268, 1515
BstV1I GCAGC 1 cut(s) 1549
BstX2I RGATCY 4 cut(s) 436, 522, 789, 1569
BstYI RGATCY 4 cut(s) 436, 522, 789, 1569
BsuRI GGCC 3 cut(s) 87, 1057, 1191
BtsIMutI CAGTG 2 cut(s) 957, 1393
Cac8I GCNNGC 1 cut(s) 924
CfoI GCGC 1 cut(s) 1517
Cfr13I GGNCC 2 cut(s) 236, 1145
Csp6I GTAC 5 cut(s) 373, 474, 900, 977, 1486
CviAII CATG 6 cut(s) 62, 896, 1149, 1174, 1336, 1397
CviQI GTAC 5 cut(s) 373, 474, 900, 977, 1486
DdeI CTNAG 7 cut(s) 345, 427, 519, 609, 960, 1371, 1603
DpnI GATC 7 cut(s) 328, 438, 524, 776, 791, 1571, 1608
DpnII GATC 7 cut(s) 326, 436, 522, 774, 789, 1569, 1606
DraI TTTAAA 1 cut(s) 1362
DrdI GACNNNNNNGTC 1 cut(s) 1124
DseDI GACNNNNNNGTC 1 cut(s) 1124
EaeI YGGCCR 2 cut(s) 1055, 1189
Eam1104I CTCTTC 3 cut(s) 73, 133, 204
EarI CTCTTC 3 cut(s) 73, 133, 204
Ecl136II GAGCTC 1 cut(s) 814
Eco130I CCWWGG 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 816
Eco31I GGTCTC 1 cut(s) 570
Eco47I GGWCC 2 cut(s) 236, 1145
Eco53kI GAGCTC 1 cut(s) 814
Eco57I CTGAAG 2 cut(s) 1002, 1149
Eco88I CYCGRG 1 cut(s) 1202
EcoICRI GAGCTC 1 cut(s) 814
EcoRII CCWGG 2 cut(s) 1078, 1141
EcoT14I CCWWGG 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 816
ErhI CCWWGG 1 cut(s) 53
Esp3I CGTCTC 2 cut(s) 130, 230
FaeI CATG 6 cut(s) 65, 899, 1152, 1177, 1339, 1400
FalI AAGNNNNNCTT 4 cut(s) 697, 729, 1393, 1425
FaqI GGGAC 2 cut(s) 123, 1613
FatI CATG 6 cut(s) 61, 895, 1148, 1173, 1335, 1396
FauNDI CATATG 2 cut(s) 999, 1611
FbaI TGATCA 1 cut(s) 774
Fnu4HI GCNGC 2 cut(s) 933, 1563
FriOI GRGCYC 1 cut(s) 816
Fsp4HI GCNGC 2 cut(s) 933, 1563
FspBI CTAG 2 cut(s) 351, 477
GlaI GCGC 1 cut(s) 1516
GluI GCNGC 2 cut(s) 933, 1563
HaeIII GGCC 3 cut(s) 87, 1057, 1191
HapII CCGG 2 cut(s) 495, 798
HhaI GCGC 1 cut(s) 1517
Hin1II CATG 6 cut(s) 65, 899, 1152, 1177, 1339, 1400
Hin6I GCGC 1 cut(s) 1515
HinP1I GCGC 1 cut(s) 1515
HincII GTYRAC 1 cut(s) 1282
HindII GTYRAC 1 cut(s) 1282
HindIII AAGCTT 2 cut(s) 878, 1010
HpaII CCGG 2 cut(s) 495, 798
HphI GGTGA 2 cut(s) 249, 752
Hpy166II GTNNAC 4 cut(s) 491, 659, 1282, 1418
Hpy188I TCNGA 7 cut(s) 156, 172, 430, 535, 1117, 1555, 1606
Hpy188III TCNNGA 7 cut(s) 379, 869, 992, 1042, 1204, 1373, 1586
Hpy8I GTNNAC 4 cut(s) 491, 659, 1282, 1418
HpyAV CCTTC 4 cut(s) 159, 1032, 1167, 1180
HpyCH4III ACNGT 3 cut(s) 1121, 1279, 1388
HpyCH4IV ACGT 2 cut(s) 136, 538
HpyCH4V TGCA 4 cut(s) 683, 710, 926, 1565
HpyF10VI GCNNNNNNNGC 5 cut(s) 932, 1063, 1498, 1507, 1523
HpyF3I CTNAG 7 cut(s) 345, 427, 519, 609, 960, 1371, 1603
HpySE526I ACGT 2 cut(s) 136, 538
Hsp92II CATG 6 cut(s) 65, 899, 1152, 1177, 1339, 1400
HspAI GCGC 1 cut(s) 1515
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 7 cut(s) 326, 436, 522, 774, 789, 1569, 1606
LmnI GCTCC 1 cut(s) 819
Lsp1109I GCAGC 1 cut(s) 1549
LweI GCATC 2 cut(s) 719, 1497
MaeI CTAG 2 cut(s) 351, 477
MaeII ACGT 2 cut(s) 136, 538
MaeIII GTNAC 4 cut(s) 334, 459, 1042, 1388
MalI GATC 7 cut(s) 328, 438, 524, 776, 791, 1571, 1608
MboI GATC 7 cut(s) 326, 436, 522, 774, 789, 1569, 1606
MflI RGATCY 4 cut(s) 436, 522, 789, 1569
MhlI GDGCHC 1 cut(s) 816
MlsI TGGCCA 2 cut(s) 1057, 1191
MluCI AATT 5 cut(s) 36, 98, 307, 467, 1537
MluNI TGGCCA 2 cut(s) 1057, 1191
MlyI GAGTC 3 cut(s) 698, 1039, 1595
MmeI TCCRAC 1 cut(s) 179
Mox20I TGGCCA 2 cut(s) 1057, 1191
MroXI GAANNNNTTC 1 cut(s) 1443
MscI TGGCCA 2 cut(s) 1057, 1191
MseI TTAA 5 cut(s) 405, 615, 882, 1361, 1521
MslI CAYNNNNRTG 1 cut(s) 66
Msp20I TGGCCA 2 cut(s) 1057, 1191
MspI CCGG 2 cut(s) 495, 798
MspR9I CCNGG 4 cut(s) 495, 799, 1080, 1143
MvaI CCWGG 2 cut(s) 1080, 1143
MvnI CGCG 2 cut(s) 1268, 1515
MwoI GCNNNNNNNGC 5 cut(s) 932, 1063, 1498, 1507, 1523
NciI CCSGG 2 cut(s) 495, 799
NdeI CATATG 2 cut(s) 999, 1611
NdeII GATC 7 cut(s) 326, 436, 522, 774, 789, 1569, 1606
NlaIII CATG 6 cut(s) 65, 899, 1152, 1177, 1339, 1400
NlaIV GGNNCC 2 cut(s) 1179, 1220
NmeAIII GCCGAG 1 cut(s) 631
NmuCI GTSAC 3 cut(s) 459, 1042, 1388
PaeR7I CTCGAG 1 cut(s) 1202
PceI AGGCCT 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 1443
PfeI GAWTC 8 cut(s) 173, 247, 398, 964, 1112, 1196, 1376, 1556
PflFI GACNNNGTC 1 cut(s) 1149
PflMI CCANNNNNTGG 1 cut(s) 1187
PfoI TCCNGGA 2 cut(s) 1078, 1141
PkrI GCNGC 2 cut(s) 934, 1564
PleI GAGTC 3 cut(s) 697, 1039, 1595
PpsI GAGTC 3 cut(s) 697, 1039, 1595
Psp124BI GAGCTC 1 cut(s) 816
Psp1406I AACGTT 1 cut(s) 538
Psp6I CCWGG 2 cut(s) 1078, 1141
PspGI CCWGG 2 cut(s) 1078, 1141
PspN4I GGNNCC 2 cut(s) 1179, 1220
PspPI GGNCC 2 cut(s) 236, 1145
PsuI RGATCY 4 cut(s) 436, 522, 789, 1569
PsyI GACNNNGTC 1 cut(s) 1149
RsaI GTAC 5 cut(s) 374, 475, 901, 978, 1487
RsaNI GTAC 5 cut(s) 373, 474, 900, 977, 1486
RseI CAYNNNNRTG 1 cut(s) 66
SacI GAGCTC 1 cut(s) 816
SaqAI TTAA 5 cut(s) 405, 615, 882, 1361, 1521
SatI GCNGC 2 cut(s) 933, 1563
Sau3AI GATC 7 cut(s) 326, 436, 522, 774, 789, 1569, 1606
Sau96I GGNCC 2 cut(s) 236, 1145
SchI GAGTC 3 cut(s) 698, 1039, 1595
ScrFI CCNGG 4 cut(s) 495, 799, 1080, 1143
SduI GDGCHC 1 cut(s) 816
SfaNI GCATC 2 cut(s) 719, 1497
SfcI CTRYAG 1 cut(s) 1458
Sfr274I CTCGAG 1 cut(s) 1202
SinI GGWCC 2 cut(s) 236, 1145
SlaI CTCGAG 1 cut(s) 1202
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 377, 1202
SmoI CTYRAG 2 cut(s) 377, 1202
Sse9I AATT 5 cut(s) 36, 98, 307, 467, 1537
SseBI AGGCCT 1 cut(s) 87
SsiI CCGC 2 cut(s) 480, 932
SspMI CTAG 2 cut(s) 351, 477
SstI GAGCTC 1 cut(s) 816
StuI AGGCCT 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 493, 797, 1078, 1141
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 3 cut(s) 1121, 1279, 1388
TaiI ACGT 2 cut(s) 139, 541
TaqI TCGA 1 cut(s) 1203
TasI AATT 5 cut(s) 36, 98, 307, 467, 1537
TatI WGTACW 2 cut(s) 473, 1485
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 8 cut(s) 173, 247, 398, 964, 1112, 1196, 1376, 1556
Tru1I TTAA 5 cut(s) 405, 615, 882, 1361, 1521
Tru9I TTAA 5 cut(s) 405, 615, 882, 1361, 1521
TscAI CASTG 2 cut(s) 964, 1393
TseFI GTSAC 3 cut(s) 459, 1042, 1388
TseI GCWGC 1 cut(s) 1562
Tsp45I GTSAC 3 cut(s) 459, 1042, 1388
TspDTI ATGAA 9 cut(s) 26, 33, 50, 564, 593, 636, 1016, 1162, 1570
TspGWI ACGGA 1 cut(s) 1565
TspRI CASTG 2 cut(s) 964, 1393
Tth111I GACNNNGTC 1 cut(s) 1149
Van91I CCANNNNNTGG 1 cut(s) 1187
VpaK11BI GGWCC 2 cut(s) 236, 1145
XhoI CTCGAG 1 cut(s) 1202
XmnI GAANNNNTTC 1 cut(s) 1443
XspI CTAG 2 cut(s) 351, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.