AT3G23010

Leucine Rich Repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8174341 .. 8176911
2571 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23010.1

Sequence Viewer

Length: 1788 bp
ATGCGTCTTTGGGATAATGATCTAAAAGGTAATATTCCTACTTCATTTGCCAACTTAACAAAGCTTTCTGAATTGTACCTCTTTGGAAATCAGTTCACGGGTGGGGATACAGTATTAGCCAATTTAACCAGCTTGTCCATTATAGACCTCTCCTTAAATTACTTCAAATCCTCCATTTCCGCTGACCTTAGTGGACTTCACAACTTAGAGCGATTTTCGGTGTATAACAACTCATTTTCCGGACCTTTTCCTTTATCATTGCTCATGATTCCTTCTTTAGTCCATATTGATTTAAGCCAAAACCACTTCGAGGGACCTATTGATTTTAGGAATACCTTTTCATTATCTAGGCTAAGAGTGTTATATGTTGGCTTCAACAATTTAGATGGGCTAATTCCAGAATCTATATCTAAATTAGTCAATCTCGAATATTTAGATGTTAGCCACAACAATTTCGGAGGACAAGTCCCTAGATCAATATCTAAAGTAGTCAACCTCACTAGCGTTGACCTTTCCTATAATAAGTTGGAAGGTCAAGTCCCTGATTTTGTATGGAGATCCTCAAAGTTGGATTATGTGGATCTTTCTTATAATTCTTTCAACTGCTTCGCCAAATCAGTGGAAGTTATCGATGGAGCATCATTAACTATGTTAAATCTTGGTTCAAATTCAGTCGACGGACCATTCCCCAAATGGATATGCAAGGTTAAAGATTTATACGCCTTGGATTTGTCCAACAACCATTTTAATGGTTCCATTCCTCAATGTTTGAAGTATTCCACTTATTTTCATACGTTAAATCTGAGAAACAACAGTCTAAGTGGGGTTCTACCAAATTTATTCATTAAGGACTCTCAGTTGCGATCACTTGACGTTAGCAGCAATAATTTGGTGGGTAAACTTCCAAAATCGTTGATCAACTGCGAGAGGATTGAATTTTTGAATGTGAAAGGAAACAAAATCATGGACACGTTTCCATTTTGGTTGGGATCTCTACCATATTTAAAAGTTCTTATGCTCGGATCAAATGCATTTTATGGTCCCGTCTATAACCCCTCCGCATATTTGGGGTTTCCAAGTATAAGGATCATTGATATATCCAATAACAACTTTGTTGGATCATTGCCACAAGACTATTTTGCCAATTGGCTTGAAATGTCTTTGGTGTGGAGTGGTTCGGACATCCCACAGTTTAAATATATGGGAAACGTTAATTTTAGTACGTATGATTCGATCGATTTGGTGTACAAAGGAGTAGAGACGGATTTTGATCGTATCTTTGAAGGTTTCAATGCTATTGATTTTTCTGGAAACCGATTCTCCGGACATATCCCTGGGTCTATTGGTCTACTGAGCGAACTGCGTCTTCTGAACTTGTCAGGCAATGCATTCACAGGCAATATCCCACCATCCTTGGCGAATATCACAAATCTCGAGTCATTAGACCTATCACGAAATAACTTGTCTGGTGAGATTCCTATAAGTCTTGGAAAACTCTCGTTTTTGTCCAACACCAACTTCTCCTACAATCATCTTGAAGGATTGATTCCACAAAGTACACAGTTTGCAACTCAAAATTGTTCTTCGTTCCTGGGTAATCTTGGACTCTATGGTTTCAGGGAAATTTGTGGAGAAAGCCATCATGTGCCCGTTCCTACTACATCTCAGCAACCCGAGGAACCTTTGTCGGAATCGGAAGACCAATTGCTGAACTGGATAGCAGCTGCGATAGCGTTTGGACCTGGTATGTTTTGTGGATTAGTGATCGGACATATCTTCACTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

595

Amino Acids

66.0

Weight (kDa)

5.18

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 112 - 152 4.7e-07 Leucine rich repeat
LRR_8 PF13855 265 - 321 6.7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018733)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AccI GTMKAC 2 cut(s) 675, 1348
AccIII TCCGGA 2 cut(s) 239, 1322
AciI CCGC 2 cut(s) 180, 1059
AclI AACGTT 1 cut(s) 1209
AclWI GGATC 6 cut(s) 552, 588, 997, 1030, 1094, 1126
AcsI RAATTY 4 cut(s) 667, 835, 935, 1623
AfaI GTAC 4 cut(s) 77, 1222, 1247, 1558
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 969
AjnI CCWGG 3 cut(s) 1333, 1590, 1741
AjuI GAANNNNNNNTTGG 2 cut(s) 1502, 1534
AluBI AGCT 3 cut(s) 64, 132, 1724
AluI AGCT 3 cut(s) 64, 132, 1724
Alw26I GTCTC 1 cut(s) 1253
AlwI GGATC 6 cut(s) 552, 588, 997, 1030, 1094, 1126
Ama87I CYCGRG 2 cut(s) 1433, 1673
Aor13HI TCCGGA 2 cut(s) 239, 1322
ApeKI GCWGC 3 cut(s) 879, 1721, 1724
ApoI RAATTY 4 cut(s) 667, 835, 935, 1623
ArsI GACNNNNNNTTYG 2 cut(s) 1421, 1453
AspS9I GGNCC 5 cut(s) 242, 314, 680, 1040, 1739
AsuHPI GGTGA 1 cut(s) 1481
AvaI CYCGRG 2 cut(s) 1433, 1673
AvaII GGWCC 5 cut(s) 242, 314, 680, 1040, 1739
BaeGI GKGCMC 1 cut(s) 1650
BbsI GAAGAC 2 cut(s) 1358, 1704
BbvI GCAGC 3 cut(s) 891, 1711, 1733
BccI CCATC 4 cut(s) 380, 626, 1417, 1647
BciT130I CCWGG 3 cut(s) 1335, 1592, 1743
BciVI GTATCC 1 cut(s) 100
BclI TGATCA 1 cut(s) 915
BcoDI GTCTC 1 cut(s) 1253
BfaI CTAG 3 cut(s) 348, 471, 501
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 3 cut(s) 880, 1722, 1725
BlsI GCNGC 3 cut(s) 881, 1723, 1726
Bme1390I CCNGG 3 cut(s) 1335, 1592, 1743
Bme18I GGWCC 5 cut(s) 242, 314, 680, 1040, 1739
BmeT110I CYCGRG 2 cut(s) 1433, 1673
BmgT120I GGNCC 5 cut(s) 242, 314, 680, 1040, 1739
BmiI GGNNCC 4 cut(s) 315, 754, 1042, 1680
BmrFI CCNGG 3 cut(s) 1335, 1592, 1743
BmsI GCATC 1 cut(s) 647
BpiI GAAGAC 2 cut(s) 1358, 1704
Bsa29I ATCGAT 2 cut(s) 630, 1236
BsaAI YACGTR 1 cut(s) 1224
BsaBI GATNNNNATC 3 cut(s) 18, 478, 1269
BsaJI CCNNGG 6 cut(s) 723, 1333, 1334, 1413, 1591, 1674
BsaWI WCCGGW 2 cut(s) 239, 1322
BsaXI ACNNNNNCTCC 4 cut(s) 450, 480, 1304, 1334
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 1718
Bse3DI GCAATG 3 cut(s) 257, 1121, 1390
Bse8I GATNNNNATC 3 cut(s) 18, 478, 1269
BseAI TCCGGA 2 cut(s) 239, 1322
BseBI CCWGG 3 cut(s) 1335, 1592, 1743
BseCI ATCGAT 2 cut(s) 630, 1236
BseDI CCNNGG 6 cut(s) 723, 1333, 1334, 1413, 1591, 1674
BseGI GGATG 2 cut(s) 1182, 1409
BseJI GATNNNNATC 3 cut(s) 18, 478, 1269
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 3 cut(s) 257, 1121, 1390
BseMII CTCAG 4 cut(s) 794, 869, 1343, 1679
BseNI ACTGG 1 cut(s) 1718
BseSI GKGCMC 1 cut(s) 1650
BseXI GCAGC 3 cut(s) 891, 1711, 1733
Bsh1285I CGRYCG 1 cut(s) 1236
BshVI ATCGAT 2 cut(s) 630, 1236
BsiEI CGRYCG 1 cut(s) 1236
BsiHKCI CYCGRG 2 cut(s) 1433, 1673
BsiSI CCGG 2 cut(s) 240, 1323
BslFI GGGAC 4 cut(s) 327, 452, 524, 1026
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 1253
BsmBI CGTCTC 1 cut(s) 1253
BsmFI GGGAC 4 cut(s) 327, 452, 524, 1026
BsmI GAATGC 1 cut(s) 1388
BsoBI CYCGRG 2 cut(s) 1433, 1673
Bsp1286I GDGCHC 1 cut(s) 1650
Bsp13I TCCGGA 2 cut(s) 239, 1322
Bsp1407I TGTACA 1 cut(s) 1245
BspACI CCGC 2 cut(s) 180, 1059
BspCNI CTCAG 4 cut(s) 795, 868, 1344, 1678
BspDI ATCGAT 2 cut(s) 630, 1236
BspEI TCCGGA 2 cut(s) 239, 1322
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 4 cut(s) 315, 754, 1042, 1680
BspPI GGATC 6 cut(s) 552, 588, 997, 1030, 1094, 1126
BsrDI GCAATG 3 cut(s) 257, 1121, 1390
BsrGI TGTACA 1 cut(s) 1245
BsrI ACTGG 1 cut(s) 1718
BssECI CCNNGG 6 cut(s) 723, 1333, 1334, 1413, 1591, 1674
BssT1I CCWWGG 2 cut(s) 723, 1413
Bst2UI CCWGG 3 cut(s) 1335, 1592, 1743
Bst4CI ACNGT 4 cut(s) 112, 815, 1191, 1563
BstAUI TGTACA 1 cut(s) 1245
BstBAI YACGTR 1 cut(s) 1224
BstDEI CTNAG 8 cut(s) 188, 205, 353, 803, 818, 855, 1352, 1665
BstF5I GGATG 2 cut(s) 1182, 1409
BstMAI GTCTC 1 cut(s) 1253
BstMCI CGRYCG 1 cut(s) 1236
BstMWI GCNNNNNNNGC 1 cut(s) 1730
BstNI CCWGG 3 cut(s) 1335, 1592, 1743
BstSCI CCNGG 3 cut(s) 1333, 1590, 1741
BstSLI GKGCMC 1 cut(s) 1650
BstSNI TACGTA 1 cut(s) 1224
BstV1I GCAGC 3 cut(s) 891, 1711, 1733
BstV2I GAAGAC 2 cut(s) 1358, 1704
BstX2I RGATCY 3 cut(s) 557, 580, 989
BstXI CCANNNNNNTGG 2 cut(s) 619, 749
BstYI RGATCY 3 cut(s) 557, 580, 989
Bsu15I ATCGAT 2 cut(s) 630, 1236
BsuI GTATCC 1 cut(s) 100
BsuTUI ATCGAT 2 cut(s) 630, 1236
BtsCI GGATG 2 cut(s) 1182, 1409
BtsIMutI CAGTG 1 cut(s) 624
CciI TCATGA 1 cut(s) 264
Cfr13I GGNCC 5 cut(s) 242, 314, 680, 1040, 1739
ClaI ATCGAT 2 cut(s) 630, 1236
CseI GACGC 1 cut(s) 1352
CsiI ACCWGGT 1 cut(s) 1741
Csp6I GTAC 4 cut(s) 76, 1221, 1246, 1557
CspCI CAANNNNNGTGG 2 cut(s) 1395, 1430
CviAII CATG 3 cut(s) 265, 964, 1643
CviQI GTAC 4 cut(s) 76, 1221, 1246, 1557
DdeI CTNAG 8 cut(s) 188, 205, 353, 803, 818, 855, 1352, 1665
DraI TTTAAA 2 cut(s) 1005, 1195
Eco105I TACGTA 1 cut(s) 1224
Eco130I CCWWGG 2 cut(s) 723, 1413
Eco47I GGWCC 5 cut(s) 242, 314, 680, 1040, 1739
Eco88I CYCGRG 2 cut(s) 1433, 1673
EcoO109I RGGNCCY 1 cut(s) 314
EcoRII CCWGG 3 cut(s) 1333, 1590, 1741
EcoT14I CCWWGG 2 cut(s) 723, 1413
EcoT22I ATGCAT 2 cut(s) 1033, 1390
ErhI CCWWGG 2 cut(s) 723, 1413
Esp3I CGTCTC 1 cut(s) 1253
FaeI CATG 3 cut(s) 268, 967, 1646
FaqI GGGAC 4 cut(s) 327, 452, 524, 1026
FatI CATG 3 cut(s) 264, 963, 1642
FbaI TGATCA 1 cut(s) 915
FblI GTMKAC 2 cut(s) 675, 1348
Fnu4HI GCNGC 3 cut(s) 880, 1722, 1725
FokI GGATG 2 cut(s) 1169, 1396
Fsp4HI GCNGC 3 cut(s) 880, 1722, 1725
FspBI CTAG 3 cut(s) 348, 471, 501
GluI GCNGC 3 cut(s) 880, 1722, 1725
HapII CCGG 2 cut(s) 240, 1323
HgaI GACGC 1 cut(s) 1352
Hin1II CATG 3 cut(s) 268, 967, 1646
HincII GTYRAC 3 cut(s) 493, 508, 676
HindII GTYRAC 3 cut(s) 493, 508, 676
HindIII AAGCTT 1 cut(s) 62
HpaII CCGG 2 cut(s) 240, 1323
HphI GGTGA 1 cut(s) 1481
Hpy166II GTNNAC 9 cut(s) 96, 194, 493, 508, 676, 899, 1246, 1349, 1559
Hpy188I TCNGA 9 cut(s) 70, 458, 804, 1022, 1180, 1371, 1690, 1696, 1769
Hpy188III TCNNGA 9 cut(s) 240, 265, 398, 425, 1308, 1323, 1433, 1452, 1535
Hpy8I GTNNAC 9 cut(s) 96, 194, 493, 508, 676, 899, 1246, 1349, 1559
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 4 cut(s) 282, 524, 1277, 1532
HpyCH4III ACNGT 4 cut(s) 112, 815, 1191, 1563
HpyCH4IV ACGT 5 cut(s) 794, 873, 971, 1209, 1223
HpyCH4V TGCA 4 cut(s) 702, 1031, 1388, 1568
HpyF10VI GCNNNNNNNGC 1 cut(s) 1730
HpyF3I CTNAG 8 cut(s) 188, 205, 353, 803, 818, 855, 1352, 1665
HpySE526I ACGT 5 cut(s) 794, 873, 971, 1209, 1223
Hsp92II CATG 3 cut(s) 268, 967, 1646
Kpn2I TCCGGA 2 cut(s) 239, 1322
Ksp22I TGATCA 1 cut(s) 915
LmnI GCTCC 1 cut(s) 635
Lsp1109I GCAGC 3 cut(s) 891, 1711, 1733
LweI GCATC 1 cut(s) 647
MabI ACCWGGT 1 cut(s) 1741
MaeI CTAG 3 cut(s) 348, 471, 501
MaeII ACGT 5 cut(s) 794, 873, 971, 1209, 1223
MboII GAAGA 4 cut(s) 1358, 1575, 1709, 1768
MfeI CAATTG 2 cut(s) 1144, 1703
MflI RGATCY 3 cut(s) 557, 580, 989
MhlI GDGCHC 1 cut(s) 1650
MlyI GAGTC 3 cut(s) 845, 1445, 1599
MmeI TCCRAC 6 cut(s) 507, 549, 759, 1096, 1533, 1668
Mph1103I ATGCAT 2 cut(s) 1033, 1390
MroI TCCGGA 2 cut(s) 239, 1322
MslI CAYNNNNRTG 1 cut(s) 747
MspA1I CMGCKG 2 cut(s) 182, 1724
MspI CCGG 2 cut(s) 240, 1323
MspR9I CCNGG 3 cut(s) 1335, 1592, 1743
MunI CAATTG 2 cut(s) 1144, 1703
Mva1269I GAATGC 1 cut(s) 1388
MvaI CCWGG 3 cut(s) 1335, 1592, 1743
MwoI GCNNNNNNNGC 1 cut(s) 1730
NlaIII CATG 3 cut(s) 268, 967, 1646
NlaIV GGNNCC 4 cut(s) 315, 754, 1042, 1680
NsiI ATGCAT 2 cut(s) 1033, 1390
PaeR7I CTCGAG 1 cut(s) 1433
PagI TCATGA 1 cut(s) 264
PasI CCCWGGG 1 cut(s) 1334
PcsI WCGNNNNNNNCGW 1 cut(s) 1229
PctI GAATGC 1 cut(s) 1388
PfeI GAWTC 7 cut(s) 268, 401, 1229, 1317, 1474, 1546, 1691
PkrI GCNGC 3 cut(s) 881, 1723, 1726
Ple19I CGATCG 1 cut(s) 1236
PleI GAGTC 3 cut(s) 845, 1444, 1599
PpsI GAGTC 3 cut(s) 845, 1444, 1599
Ppu21I YACGTR 1 cut(s) 1224
PpuMI RGGWCCY 1 cut(s) 314
PsiI TTATAA 1 cut(s) 591
Psp1406I AACGTT 1 cut(s) 1209
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 3 cut(s) 1333, 1590, 1741
PspGI CCWGG 3 cut(s) 1333, 1590, 1741
PspN4I GGNNCC 4 cut(s) 315, 754, 1042, 1680
PspPI GGNCC 5 cut(s) 242, 314, 680, 1040, 1739
PspPPI RGGWCCY 1 cut(s) 314
PsuI RGATCY 3 cut(s) 557, 580, 989
PvuI CGATCG 1 cut(s) 1236
PvuII CAGCTG 1 cut(s) 1724
RsaI GTAC 4 cut(s) 77, 1222, 1247, 1558
RsaNI GTAC 4 cut(s) 76, 1221, 1246, 1557
RseI CAYNNNNRTG 1 cut(s) 747
SalI GTCGAC 1 cut(s) 674
SatI GCNGC 3 cut(s) 880, 1722, 1725
Sau96I GGNCC 5 cut(s) 242, 314, 680, 1040, 1739
SchI GAGTC 3 cut(s) 845, 1445, 1599
ScrFI CCNGG 3 cut(s) 1335, 1592, 1743
SduI GDGCHC 1 cut(s) 1650
SexAI ACCWGGT 1 cut(s) 1741
SfaNI GCATC 1 cut(s) 647
Sfr274I CTCGAG 1 cut(s) 1433
SinI GGWCC 5 cut(s) 242, 314, 680, 1040, 1739
SlaI CTCGAG 1 cut(s) 1433
SmiMI CAYNNNNRTG 1 cut(s) 747
SmlI CTYRAG 1 cut(s) 1433
SmoI CTYRAG 1 cut(s) 1433
SnaBI TACGTA 1 cut(s) 1224
SsiI CCGC 2 cut(s) 180, 1059
SspI AATATT 2 cut(s) 34, 431
SspMI CTAG 3 cut(s) 348, 471, 501
StyD4I CCNGG 3 cut(s) 1333, 1590, 1741
StyI CCWWGG 2 cut(s) 723, 1413
TaaI ACNGT 4 cut(s) 112, 815, 1191, 1563
TaiI ACGT 5 cut(s) 797, 876, 974, 1212, 1226
TaqI TCGA 7 cut(s) 309, 426, 630, 675, 1232, 1236, 1434
TatI WGTACW 2 cut(s) 1245, 1556
TfiI GAWTC 7 cut(s) 268, 401, 1229, 1317, 1474, 1546, 1691
TscAI CASTG 1 cut(s) 624
TseI GCWGC 3 cut(s) 879, 1721, 1724
TspDTI ATGAA 5 cut(s) 33, 330, 779, 832, 1773
TspGWI ACGGA 2 cut(s) 693, 1277
TspRI CASTG 1 cut(s) 624
VpaK11BI GGWCC 5 cut(s) 242, 314, 680, 1040, 1739
XapI RAATTY 4 cut(s) 667, 835, 935, 1623
XcmI CCANNNNNNNNNTGG 1 cut(s) 690
XhoI CTCGAG 1 cut(s) 1433
XmiI GTMKAC 2 cut(s) 675, 1348
XspI CTAG 3 cut(s) 348, 471, 501
Zsp2I ATGCAT 2 cut(s) 1033, 1390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.