Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026827

Physical Location & Seq

Genomic Coordinates Forward (+)

8309209 .. 8310910

Gene Structure 1702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGAAGAGCTCCATGCTGTGAGAAGATGGGGTTGAAGAGAGGACCATGGACACCTGAAGAAGATCAAATCTTGGTCTCTTTTATCCTCAACCATGGACATAGTAACTGGCGAGCCCTCCCTAAGCAAGCTGGTCTTTTGAGATGTGGAAAAAGCTGTAGACTTAGGTGGATGAACTATTTAAAGCCTGATATTAAACGTGGCAATTTCACCAAAGAAGAGGAAGATGCTATCATCAGCTTACACCAAATACTTGGCAATAGATGGTCAGCGATTGCAGCAAAACTGCCTGGAAGAACCGATAACGAGATCAAGAACGTATGGCACACTCACTTGAAGAAGAGACTCGAAGATTATCAACCAGCTAAACCTAAGACCAGCAACAAAAAGAAGGGTACTAAACCAAAATCTGAATCCGTAATAACGAGCTCGAACAGTACTAGAAGCGAATCGGAGCTAGCAGATTCATCAAACCCTTCTGGAGAAAGCTTATTTTCGACATCGCCTTCGACAAGTGAGGTTTCTTCGATGACACTCATAAGCCACGACGGCTATAGCAACGAGATTAATATGGATAACAAACCGGGAGATATCAGTACTATCGATCAAGAATGTGTTTCTTTCGAAACTTTTGGTGCGGATATCGATGAAAGCTTCTGGAAAGAGACACTGTATAGCCAAGATGAACACAACTACGTATCGAATGACCTAGAAGTGGCTGGTTTAGTTGAGATACAACAAGAGTTTCAAAACTTGGGCTCCGCTAATAATGAGATGATTTTTGACAGTGAGATGGACTTCTGGTTCGATGTATTGGCTAGAACCGGCGGGGAACAAGATCTCTTAGCCGGGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048580 GO:0048831 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050826 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

285

Amino Acids

32.04

Weight (kDa)

5.2

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	5.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	5.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	4.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0026827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23250 AT3G23250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	3 cut(s)	638, 762, 828
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	397, 439, 598
AfiI	CCNNNNNNNGG	1 cut(s)	715
AgsI	TTSAA	3 cut(s)	37, 337, 749
AjnI	CCWGG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	788, 820
AluBI	AGCT	9 cut(s)	11, 131, 156, 240, 365, 429, 457, 489, 654
AluI	AGCT	9 cut(s)	11, 131, 156, 240, 365, 429, 457, 489, 654
Alw21I	GWGCWC	2 cut(s)	13, 431
Alw26I	GTCTC	3 cut(s)	82, 337, 659
ApeKI	GCWGC	1 cut(s)	278
ArsI	GACNNNNNNTTYG	4 cut(s)	490, 522, 788, 820
AseI	ATTAAT	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	44
AsuC2I	CCSGG	2 cut(s)	585, 850
AsuHPI	GGTGA	1 cut(s)	202
AsuII	TTCGAA	1 cut(s)	624
AsuNHI	GCTAGC	1 cut(s)	457
AvaII	GGWCC	1 cut(s)	44
BanII	GRGCYC	5 cut(s)	13, 118, 431, 761, 855
Bbv12I	GWGCWC	2 cut(s)	13, 431
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	3 cut(s)	22, 258, 787
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	2 cut(s)	585, 850
BcoDI	GTCTC	3 cut(s)	82, 337, 659
BfaI	CTAG	5 cut(s)	441, 458, 710, 819, 856
BfmI	CTRYAG	2 cut(s)	157, 553
BglI	GCCNNNNNGGC	1 cut(s)	549
BglII	AGATCT	1 cut(s)	838
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	2 cut(s)	439, 598
Bme1390I	CCNGG	3 cut(s)	291, 585, 850
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	3 cut(s)	291, 585, 850
BmsI	GCATC	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	624
BpuMI	CCSGG	2 cut(s)	585, 850
Bsa29I	ATCGAT	2 cut(s)	603, 645
BsaAI	YACGTR	1 cut(s)	697
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	47, 94
BsaXI	ACNNNNNCTCC	2 cut(s)	743, 773
Bsc4I	CCNNNNNNNGG	1 cut(s)	715
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	291
BseCI	ATCGAT	2 cut(s)	603, 645
BseDI	CCNNGG	2 cut(s)	47, 94
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	715
BseNI	ACTGG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	290
BshVI	ATCGAT	2 cut(s)	603, 645
BsiHKAI	GWGCWC	2 cut(s)	13, 431
BsiSI	CCGG	3 cut(s)	584, 825, 849
BslI	CCNNNNNNNGG	1 cut(s)	715
BsmAI	GTCTC	3 cut(s)	82, 337, 659
Bso31I	GGTCTC	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	624
Bsp1286I	GDGCHC	5 cut(s)	13, 118, 431, 761, 855
Bsp143I	GATC	4 cut(s)	64, 309, 604, 838
Bsp19I	CCATGG	2 cut(s)	47, 94
BspACI	CCGC	3 cut(s)	638, 762, 828
BspDI	ATCGAT	2 cut(s)	603, 645
BspLI	GGNNCC	1 cut(s)	760
BspOI	GCTAGC	1 cut(s)	461
BspT104I	TTCGAA	1 cut(s)	624
BspTNI	GGTCTC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	824
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	2 cut(s)	47, 94
BssMI	GATC	4 cut(s)	64, 309, 604, 838
BssT1I	CCWWGG	2 cut(s)	47, 94
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	437, 672, 788
Bst6I	CTCTTC	3 cut(s)	32, 213, 335
BstBAI	YACGTR	1 cut(s)	697
BstBI	TTCGAA	1 cut(s)	624
BstC8I	GCNNGC	3 cut(s)	114, 129, 459
BstDEI	CTNAG	4 cut(s)	123, 164, 372, 844
BstDSI	CCRYGG	2 cut(s)	47, 94
BstF5I	GGATG	1 cut(s)	177
BstKTI	GATC	4 cut(s)	67, 312, 607, 841
BstMAI	GTCTC	3 cut(s)	82, 337, 659
BstMBI	GATC	4 cut(s)	64, 309, 604, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 549
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	3 cut(s)	289, 583, 848
BstSFI	CTRYAG	2 cut(s)	157, 553
BstSNI	TACGTA	1 cut(s)	697
BstV1I	GCAGC	1 cut(s)	290
BstX2I	RGATCY	1 cut(s)	838
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	838
Bsu15I	ATCGAT	2 cut(s)	603, 645
BsuTUI	ATCGAT	2 cut(s)	603, 645
BtgI	CCRYGG	2 cut(s)	47, 94
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	668, 793
Cac8I	GCNNGC	3 cut(s)	114, 129, 459
Cfr10I	RCCGGY	1 cut(s)	824
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	2 cut(s)	603, 645
Csp6I	GTAC	3 cut(s)	396, 438, 597
CviAII	CATG	3 cut(s)	15, 48, 95
CviQI	GTAC	3 cut(s)	396, 438, 597
DdeI	CTNAG	4 cut(s)	123, 164, 372, 844
DpnI	GATC	4 cut(s)	66, 311, 606, 840
DpnII	GATC	4 cut(s)	64, 309, 604, 838
DraI	TTTAAA	1 cut(s)	183
Eam1104I	CTCTTC	3 cut(s)	32, 213, 335
EarI	CTCTTC	3 cut(s)	32, 213, 335
Ecl136II	GAGCTC	2 cut(s)	11, 429
Eco105I	TACGTA	1 cut(s)	697
Eco130I	CCWWGG	2 cut(s)	47, 94
Eco24I	GRGCYC	5 cut(s)	13, 118, 431, 761, 855
Eco31I	GGTCTC	1 cut(s)	82
Eco32I	GATATC	2 cut(s)	592, 643
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	2 cut(s)	11, 429
Eco57I	CTGAAG	1 cut(s)	78
EcoICRI	GAGCTC	2 cut(s)	11, 429
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	2 cut(s)	592, 643
EcoT14I	CCWWGG	2 cut(s)	47, 94
EcoT38I	GRGCYC	5 cut(s)	13, 118, 431, 761, 855
ErhI	CCWWGG	2 cut(s)	47, 94
FaeI	CATG	3 cut(s)	18, 51, 98
FaiI	YATR	9 cut(s)	16, 49, 96, 102, 322, 539, 555, 572, 675
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	3 cut(s)	14, 47, 94
FauI	CCCGC	1 cut(s)	821
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	184
FriOI	GRGCYC	5 cut(s)	13, 118, 431, 761, 855
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	5 cut(s)	441, 458, 710, 819, 856
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	501
HapII	CCGG	3 cut(s)	584, 825, 849
Hin1II	CATG	3 cut(s)	18, 51, 98
HindIII	AAGCTT	2 cut(s)	487, 652
HinfI	GANTC	4 cut(s)	345, 413, 449, 464
HpaII	CCGG	3 cut(s)	584, 825, 849
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	412, 454
Hpy188III	TCNNGA	4 cut(s)	313, 480, 608, 658
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	3 cut(s)	385, 486, 516
HpyCH4III	ACNGT	3 cut(s)	437, 672, 788
HpyCH4IV	ACGT	3 cut(s)	199, 318, 696
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 549
HpyF3I	CTNAG	4 cut(s)	123, 164, 372, 844
HpySE526I	ACGT	3 cut(s)	199, 318, 696
Hsp92II	CATG	3 cut(s)	18, 51, 98
Kzo9I	GATC	4 cut(s)	64, 309, 604, 838
LmnI	GCTCC	3 cut(s)	16, 454, 764
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	5 cut(s)	441, 458, 710, 819, 856
MaeII	ACGT	3 cut(s)	199, 318, 696
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	4 cut(s)	66, 311, 606, 840
MboI	GATC	4 cut(s)	64, 309, 604, 838
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	5 cut(s)	13, 118, 431, 761, 855
MluCI	AATT	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	339
MnlI	CCTC	5 cut(s)	35, 98, 128, 214, 511
MseI	TTAA	3 cut(s)	182, 195, 567
MspI	CCGG	3 cut(s)	584, 825, 849
MspR9I	CCNGG	3 cut(s)	291, 585, 850
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	278, 549
NciI	CCSGG	2 cut(s)	585, 850
NcoI	CCATGG	2 cut(s)	47, 94
NdeII	GATC	4 cut(s)	64, 309, 604, 838
NheI	GCTAGC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	18, 51, 98
NlaIV	GGNNCC	1 cut(s)	760
NspV	TTCGAA	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	413, 449, 464
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Ppu21I	YACGTR	1 cut(s)	697
PshBI	ATTAAT	1 cut(s)	567
Psp124BI	GAGCTC	2 cut(s)	13, 431
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	838
RsaI	GTAC	3 cut(s)	397, 439, 598
RsaNI	GTAC	3 cut(s)	396, 438, 597
SacI	GAGCTC	2 cut(s)	13, 431
SaqAI	TTAA	3 cut(s)	182, 195, 567
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	4 cut(s)	64, 309, 604, 838
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	2 cut(s)	439, 598
SchI	GAGTC	1 cut(s)	339
ScrFI	CCNGG	3 cut(s)	291, 585, 850
SduI	GDGCHC	5 cut(s)	13, 118, 431, 761, 855
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	2 cut(s)	157, 553
SfuI	TTCGAA	1 cut(s)	624
SinI	GGWCC	1 cut(s)	44
SnaBI	TACGTA	1 cut(s)	697
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	3 cut(s)	638, 762, 828
SspMI	CTAG	5 cut(s)	441, 458, 710, 819, 856
SstI	GAGCTC	2 cut(s)	13, 431
StyD4I	CCNGG	3 cut(s)	289, 583, 848
StyI	CCWWGG	2 cut(s)	47, 94
TaaI	ACNGT	3 cut(s)	437, 672, 788
TaiI	ACGT	3 cut(s)	202, 321, 699
TasI	AATT	1 cut(s)	205
TatI	WGTACW	2 cut(s)	437, 596
TfiI	GAWTC	3 cut(s)	413, 449, 464
Tru1I	TTAA	3 cut(s)	182, 195, 567
Tru9I	TTAA	3 cut(s)	182, 195, 567
TscAI	CASTG	2 cut(s)	675, 793
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	4 cut(s)	188, 456, 663, 699
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	2 cut(s)	675, 793
VpaK11BI	GGWCC	1 cut(s)	44
VspI	ATTAAT	1 cut(s)	567
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	5 cut(s)	441, 458, 710, 819, 856
ZrmI	AGTACT	2 cut(s)	439, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.