AT3G29020
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0027308
Physical Location & Seq
Reverse (-)
11008079 .. 11009456
1378 bp
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UTR
Exon/CDS
Intron
AT3G29020.1

Sequence Viewer

Length: 702 bp
ATGGATTTTTCATGTTTCCAAGAATACCCTTTTGAGTTTCATTGCAGAGGAACAACATTTAATGGGTTTAGAGAAAACAATGCAGTGTCTGAAACAGTAGAAGAGTTCTGTAATAAAAGAAGGATGCAGAAGAAGAGTGATGATTTGAAGACTAAGAAGAAGAAGAAACAGAGTGTTTCTAGGGTTTGTAGTAGAGGACATTGGAGGATCTCTGAAGATACTCAGCTTATGGAGCTTGTTTCGGTTTACGGTCCTCAAAACTGGAACCACATTGCAGAGAGTATGCAAGGAAGAACAGGAAAGAGCTGCAGATTGAGGTGGTTTAACCAGTTAGATCCGAGGATTAACAAGAGAGCTTTCAGTGATGAAGAAGAAGAGAGACTACTTGCTGCTCATAGAGCTTTTGGTAACAAATGGGCTATGATTGCTAAGCTTTTCAATGGAAGAACAGATAATGCCTTGAAGAATCATTGGCATGTTCTCATGGCAAGGAAGATGAGACAGCAATCAAGTTCTTACGTCCAAAGATTCAATGGTTCTGCTCATGAATCTAACACAGATCACAAAATCTTCAATCTTTCTCCTGGTTTGTCTCTTCTTACCTTACACATATGCATTGAGTTTAACTCTGTTATTGTAATGAGATACTTTCGATATTTATCACTCAGGAACAATGAACTTATGGTTTGGTCTCAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

233

Amino Acids

27.61

Weight (kDa)

9.74

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 65 - 111 2.8e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 128 2.8e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 117 - 160 8.1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 120 - 169 2.3e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0027308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29020 AT3G29020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 215, 329
AcuI CTGAAG 1 cut(s) 234
AgsI TTSAA 5 cut(s) 148, 439, 463, 532, 574
AjnI CCWGG 1 cut(s) 583
AluBI AGCT 6 cut(s) 226, 235, 306, 356, 401, 433
AluI AGCT 6 cut(s) 226, 235, 306, 356, 401, 433
Alw26I GTCTC 4 cut(s) 373, 493, 597, 696
AlwI GGATC 2 cut(s) 215, 329
AlwNI CAGNNNCTG 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 306, 389
AspS9I GGNCC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 251
BarI GAAGNNNNNNTAC 2 cut(s) 366, 398
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 293, 376
BciT130I CCWGG 1 cut(s) 585
BcoDI GTCTC 4 cut(s) 373, 493, 597, 696
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 2 cut(s) 307, 390
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 2 cut(s) 308, 391
Bme1390I CCNGG 1 cut(s) 585
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 611, 643
Bpu1102I GCTNAGC 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 658
BsaI GGTCTC 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 266, 328
Bse3DI GCAATG 2 cut(s) 40, 270
Bse8I GATNNNNATC 1 cut(s) 658
BseBI CCWGG 1 cut(s) 585
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 658
BseMI GCAATG 2 cut(s) 40, 270
BseMII CTCAG 2 cut(s) 236, 679
BseNI ACTGG 2 cut(s) 266, 328
BseXI GCAGC 2 cut(s) 293, 376
BsmAI GTCTC 4 cut(s) 373, 493, 597, 696
Bso31I GGTCTC 1 cut(s) 696
Bsp143I GATC 3 cut(s) 207, 334, 559
Bsp1720I GCTNAGC 1 cut(s) 429
BspCNI CTCAG 2 cut(s) 235, 678
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 1 cut(s) 266
BspMAI CTGCAG 1 cut(s) 311
BspPI GGATC 2 cut(s) 215, 329
BspTNI GGTCTC 1 cut(s) 696
BsrDI GCAATG 2 cut(s) 40, 270
BsrI ACTGG 2 cut(s) 266, 328
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 3 cut(s) 207, 334, 559
Bst2UI CCWGG 1 cut(s) 585
Bst4CI ACNGT 2 cut(s) 97, 251
Bst6I CTCTTC 4 cut(s) 96, 128, 369, 600
BstDEI CTNAG 4 cut(s) 153, 222, 429, 665
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 3 cut(s) 210, 337, 562
BstMAI GTCTC 4 cut(s) 373, 493, 597, 696
BstMBI GATC 3 cut(s) 207, 334, 559
BstMWI GCNNNNNNNGC 3 cut(s) 232, 398, 425
BstNI CCWGG 1 cut(s) 585
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 583
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 293, 376
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 207, 334
BstYI RGATCY 2 cut(s) 207, 334
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 90, 367
CaiI CAGNNNCTG 1 cut(s) 89
CciI TCATGA 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 251
CviAII CATG 4 cut(s) 12, 476, 484, 545
CviJI RGCY 7 cut(s) 226, 235, 306, 356, 401, 419, 433
CviKI_1 RGCY 7 cut(s) 226, 235, 306, 356, 401, 419, 433
DdeI CTNAG 4 cut(s) 153, 222, 429, 665
DpnI GATC 3 cut(s) 209, 336, 561
DpnII GATC 3 cut(s) 207, 334, 559
Eam1104I CTCTTC 4 cut(s) 96, 128, 369, 600
EarI CTCTTC 4 cut(s) 96, 128, 369, 600
Eco31I GGTCTC 1 cut(s) 696
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 617
FaeI CATG 4 cut(s) 15, 479, 487, 548
FatI CATG 4 cut(s) 11, 475, 483, 544
FauNDI CATATG 1 cut(s) 611
Fnu4HI GCNGC 2 cut(s) 307, 390
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 2 cut(s) 307, 390
FspBI CTAG 1 cut(s) 180
GluI GCNGC 2 cut(s) 307, 390
Hin1II CATG 4 cut(s) 15, 479, 487, 548
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 3 cut(s) 466, 528, 548
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 91, 214, 339
Hpy188III TCNNGA 2 cut(s) 545, 667
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 97, 251
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 7 cut(s) 45, 83, 127, 275, 286, 309, 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 398, 425
HpyF3I CTNAG 4 cut(s) 153, 222, 429, 665
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 4 cut(s) 15, 479, 487, 548
Kzo9I GATC 3 cut(s) 207, 334, 559
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 6 cut(s) 247, 282, 341, 570, 597, 652
Lsp1109I GCAGC 2 cut(s) 293, 376
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 407
MalI GATC 3 cut(s) 209, 336, 561
MboI GATC 3 cut(s) 207, 334, 559
MflI RGATCY 2 cut(s) 207, 334
MnlI CCTC 6 cut(s) 41, 188, 198, 264, 309, 333
Mph1103I ATGCAT 1 cut(s) 617
MseI TTAA 4 cut(s) 60, 324, 345, 624
MslI CAYNNNNRTG 1 cut(s) 474
MspR9I CCNGG 1 cut(s) 585
MvaI CCWGG 1 cut(s) 585
MwoI GCNNNNNNNGC 3 cut(s) 232, 398, 425
NdeI CATATG 1 cut(s) 611
NdeII GATC 3 cut(s) 207, 334, 559
NlaIII CATG 4 cut(s) 15, 479, 487, 548
NlaIV GGNNCC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 617
NspI RCATGY 1 cut(s) 479
PagI TCATGA 1 cut(s) 544
PfeI GAWTC 3 cut(s) 466, 528, 548
PkrI GCNGC 2 cut(s) 308, 391
Psp6I CCWGG 1 cut(s) 583
PspGI CCWGG 1 cut(s) 583
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 311
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 2 cut(s) 207, 334
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 4 cut(s) 60, 324, 345, 624
SatI GCNGC 2 cut(s) 307, 390
Sau3AI GATC 3 cut(s) 207, 334, 559
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 585
SetI ASST 9 cut(s) 228, 237, 308, 320, 358, 403, 435, 522, 605
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 474
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 583
TaaI ACNGT 2 cut(s) 97, 251
TaiI ACGT 1 cut(s) 522
TaqI TCGA 1 cut(s) 652
TfiI GAWTC 3 cut(s) 466, 528, 548
Tru1I TTAA 4 cut(s) 60, 324, 345, 624
Tru9I TTAA 4 cut(s) 60, 324, 345, 624
TscAI CASTG 2 cut(s) 90, 367
TseI GCWGC 2 cut(s) 306, 389
TspDTI ATGAA 4 cut(s) 29, 381, 561, 690
TspRI CASTG 2 cut(s) 90, 367
VpaK11BI GGWCC 1 cut(s) 251
XceI RCATGY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.