Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023813

Physical Location & Seq

Genomic Coordinates Forward (+)

17183042 .. 17186959

Gene Structure 3918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGAGAGGAAGTACAAATGAGCGATTACGATGTTTCCGGCGACGGAGATAGGGTTTCTGAATGGGAGATGGGATTACCAAGCGACGAAGATCTAGCATCTCTTTCTTACTCTCTGATTCCACCGAATTTGGCGATGGCGTTTAGTATCACACCGGAGAGAAGCCGTACGATTCAGGATGTGAATCGTGCATCGGAGACGACGCTCTCGTCGCTACGTGGTGGATCTTCAGGTCCAAATACCTCGTCGTCGAATAATAACGTGGAGGAGGAAGATCGAGTTGGATCTAGCAGTCCTGGATCGGATTCGAAGAAGCAAAAGACATCAAACGGTGATGGAGATGACGGTGGCGGTGTGGATCCGGATTCGGCGATGGCGGCGGAAGAAGGAGATTCAGGAACTGAAGATCTATCTGGGAAAACACTTAAACGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTAGCTCACTTAGGGATCAAAAACGCTGTTCCGAAGACGATTATGCAGCTGATGAACGTTGAAGGATTAACTCGTGAGAACGTTGCGTCTCATCTTCAAAAGTATAGGCTTTACCTCAAAAGGATGCAGGGATTGACTAATGAAGGTCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTTCCTCCACAGAGCTTCCAAGATATCGGTGGCGGTGGCGGTAGCAGCGGTAATGTTGGAGTGCCGATTCCGGGGGCGTATGGAACGCAACAGATGATGCAGATGCCAGTTTATGCACATCATATGGGTATGCAAGGATATCATCATCAAAATCATAATCATGATCCTTATCATCAGAATCATCGTCATCATCATGGAGCTGGTGGAAATGGTGCGTTTGAGTCAAATCCTTATATGATGCAGCAGAATAAGTTTGGATCCATGGCTTCTTATCCTTCTGTTGGAGGTGGAAGCGCAAATGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048511 GO:0048518 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

323

Amino Acids

34.65

Weight (kDa)

5.47

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	147 - 196	2.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46640 AT3G46640 AT3G46640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	208
AccII	CGCG	1 cut(s)	436
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	8 cut(s)	351, 377, 380, 434, 452, 696, 702, 711
AclI	AACGTT	2 cut(s)	537, 561
AclWI	GGATC	9 cut(s)	232, 292, 307, 353, 366, 503, 821, 915, 928
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	2 cut(s)	213, 423
AfaI	GTAC	2 cut(s)	15, 169
AfiI	CCNNNNNNNGG	2 cut(s)	734, 944
AgsI	TTSAA	3 cut(s)	542, 578, 657
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	6 cut(s)	457, 485, 529, 646, 678, 863
AluI	AGCT	6 cut(s)	457, 485, 529, 646, 678, 863
Alw26I	GTCTC	2 cut(s)	191, 573
AlwI	GGATC	9 cut(s)	232, 292, 307, 353, 366, 503, 821, 915, 928
AlwNI	CAGNNNCTG	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	361
ApeKI	GCWGC	4 cut(s)	454, 526, 708, 904
ApoI	RAATTY	1 cut(s)	127
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
AspLEI	GCGC	1 cut(s)	959
AspS9I	GGNCC	2 cut(s)	233, 626
AsuC2I	CCSGG	1 cut(s)	735
AsuHPI	GGTGA	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	308
AvaII	GGWCC	2 cut(s)	233, 626
BamHI	GGATCC	2 cut(s)	358, 920
BauI	CACGAG	1 cut(s)	552
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	4 cut(s)	466, 538, 720, 916
BccI	CCATC	4 cut(s)	64, 130, 329, 367
BceAI	ACGGC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	735
BcoDI	GTCTC	2 cut(s)	191, 573
BfaI	CTAG	2 cut(s)	95, 288
BglII	AGATCT	2 cut(s)	91, 406
BisI	GCNGC	5 cut(s)	378, 455, 527, 709, 905
BlsI	GCNGC	5 cut(s)	379, 456, 528, 710, 906
Bme1390I	CCNGG	2 cut(s)	297, 735
Bme18I	GGWCC	2 cut(s)	233, 626
BmgT120I	GGNCC	2 cut(s)	233, 626
BmiI	GGNNCC	3 cut(s)	360, 628, 922
BmrFI	CCNGG	2 cut(s)	297, 735
BmsI	GCATC	6 cut(s)	107, 200, 594, 750, 756, 891
BpiI	GAAGAC	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	735
BsaAI	YACGTR	1 cut(s)	218
BsaBI	GATNNNNATC	2 cut(s)	183, 831
BsaJI	CCNNGG	2 cut(s)	734, 924
BsaWI	WCCGGW	2 cut(s)	154, 361
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 39, 69
Bsc4I	CCNNNNNNNGG	2 cut(s)	734, 944
Bse1I	ACTGG	1 cut(s)	770
Bse8I	GATNNNNATC	2 cut(s)	183, 831
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	734, 924
BseGI	GGATG	2 cut(s)	184, 609
BseJI	GATNNNNATC	2 cut(s)	183, 831
BseLI	CCNNNNNNNGG	2 cut(s)	734, 944
BseNI	ACTGG	1 cut(s)	770
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	4 cut(s)	466, 538, 720, 916
Bsh1236I	CGCG	1 cut(s)	436
Bsh1285I	CGRYCG	1 cut(s)	434
BsiEI	CGRYCG	1 cut(s)	434
BsiSI	CCGG	4 cut(s)	39, 155, 362, 734
BsiWI	CGTACG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	734, 944
BsmAI	GTCTC	2 cut(s)	191, 573
BsmBI	CGTCTC	2 cut(s)	191, 573
BsmFI	GGGAC	1 cut(s)	612
Bsp119I	TTCGAA	1 cut(s)	308
Bsp13I	TCCGGA	1 cut(s)	361
Bsp19I	CCATGG	1 cut(s)	924
BspACI	CCGC	8 cut(s)	351, 377, 380, 434, 452, 696, 702, 711
BspEI	TCCGGA	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	436
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	3 cut(s)	360, 628, 922
BspPI	GGATC	9 cut(s)	232, 292, 307, 353, 366, 503, 821, 915, 928
BspQI	GCTCTTC	1 cut(s)	653
BspT104I	TTCGAA	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	770
BssECI	CCNNGG	2 cut(s)	734, 924
BssSI	CACGAG	1 cut(s)	552
BssT1I	CCWWGG	1 cut(s)	924
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	332, 347
Bst6I	CTCTTC	2 cut(s)	653, 658
BstBAI	YACGTR	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	490
BstDSI	CCRYGG	1 cut(s)	924
BstF5I	GGATG	2 cut(s)	184, 609
BstFNI	CGCG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	959
BstMAI	GTCTC	2 cut(s)	191, 573
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 377, 708
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	295, 733
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	4 cut(s)	466, 538, 720, 916
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	6 cut(s)	91, 224, 284, 358, 406, 920
BstYI	RGATCY	6 cut(s)	91, 224, 284, 358, 406, 920
BtgI	CCRYGG	1 cut(s)	924
BtgZI	GCGATG	2 cut(s)	149, 386
BtsCI	GGATG	2 cut(s)	184, 609
CaiI	CAGNNNCTG	1 cut(s)	401
CciI	TCATGA	1 cut(s)	823
CfoI	GCGC	1 cut(s)	959
Cfr13I	GGNCC	2 cut(s)	233, 626
CseI	GACGC	2 cut(s)	211, 555
Csp6I	GTAC	2 cut(s)	14, 168
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	3 cut(s)	824, 857, 925
CviJI	RGCY	9 cut(s)	165, 457, 485, 529, 589, 646, 678, 863, 929
CviKI_1	RGCY	9 cut(s)	165, 457, 485, 529, 589, 646, 678, 863, 929
CviQI	GTAC	2 cut(s)	14, 168
DdeI	CTNAG	1 cut(s)	490
DrdI	GACNNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	653, 658
EarI	CTCTTC	2 cut(s)	653, 658
EciI	GGCGGA	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	924
Eco32I	GATATC	2 cut(s)	688, 803
Eco47I	GGWCC	2 cut(s)	233, 626
Eco57I	CTGAAG	2 cut(s)	213, 423
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	2 cut(s)	688, 803
EcoT14I	CCWWGG	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	924
Esp3I	CGTCTC	2 cut(s)	191, 573
FaeI	CATG	3 cut(s)	827, 860, 928
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	3 cut(s)	823, 856, 924
FauNDI	CATATG	1 cut(s)	786
Fnu4HI	GCNGC	5 cut(s)	378, 455, 527, 709, 905
FokI	GGATG	2 cut(s)	191, 616
Fsp4HI	GCNGC	5 cut(s)	378, 455, 527, 709, 905
FspBI	CTAG	2 cut(s)	95, 288
GlaI	GCGC	1 cut(s)	958
GluI	GCNGC	5 cut(s)	378, 455, 527, 709, 905
HapII	CCGG	4 cut(s)	39, 155, 362, 734
HgaI	GACGC	2 cut(s)	211, 555
HhaI	GCGC	1 cut(s)	959
Hin1II	CATG	3 cut(s)	827, 860, 928
Hin6I	GCGC	1 cut(s)	957
HinP1I	GCGC	1 cut(s)	957
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HpaII	CCGG	4 cut(s)	39, 155, 362, 734
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	447, 475
Hpy188I	TCNGA	7 cut(s)	61, 117, 196, 304, 513, 640, 840
Hpy188III	TCNNGA	5 cut(s)	176, 362, 396, 554, 824
Hpy8I	GTNNAC	2 cut(s)	447, 475
Hpy99I	CGWCG	6 cut(s)	47, 89, 205, 214, 250, 253
HpyAV	CCTTC	4 cut(s)	380, 536, 617, 948
HpyCH4III	ACNGT	2 cut(s)	332, 347
HpyCH4IV	ACGT	5 cut(s)	217, 261, 477, 537, 561
HpyCH4V	TGCA	7 cut(s)	191, 526, 607, 763, 779, 796, 904
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 377, 708
HpyF3I	CTNAG	1 cut(s)	490
HpySE526I	ACGT	5 cut(s)	217, 261, 477, 537, 561
Hsp92II	CATG	3 cut(s)	827, 860, 928
HspAI	GCGC	1 cut(s)	957
Kpn2I	TCCGGA	1 cut(s)	361
LguI	GCTCTTC	1 cut(s)	653
LmnI	GCTCC	1 cut(s)	860
Lsp1109I	GCAGC	4 cut(s)	466, 538, 720, 916
LweI	GCATC	6 cut(s)	107, 200, 594, 750, 756, 891
MaeI	CTAG	2 cut(s)	95, 288
MaeII	ACGT	5 cut(s)	217, 261, 477, 537, 561
MflI	RGATCY	6 cut(s)	91, 224, 284, 358, 406, 920
MluCI	AATT	2 cut(s)	127, 967
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	3 cut(s)	262, 700, 925
MnlI	CCTC	7 cut(s)	253, 259, 262, 605, 640, 678, 941
MroI	TCCGGA	1 cut(s)	361
MseI	TTAA	3 cut(s)	426, 548, 970
MslI	CAYNNNNRTG	2 cut(s)	822, 855
MspA1I	CMGCKG	2 cut(s)	529, 711
MspI	CCGG	4 cut(s)	39, 155, 362, 734
MspR9I	CCNGG	2 cut(s)	297, 735
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	3 cut(s)	211, 377, 708
NciI	CCSGG	1 cut(s)	735
NcoI	CCATGG	1 cut(s)	924
NdeI	CATATG	1 cut(s)	786
NlaIII	CATG	3 cut(s)	827, 860, 928
NlaIV	GGNNCC	3 cut(s)	360, 628, 922
NspV	TTCGAA	1 cut(s)	308
PagI	TCATGA	1 cut(s)	823
PciSI	GCTCTTC	1 cut(s)	653
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	9 cut(s)	118, 172, 184, 305, 365, 392, 468, 730, 841
Pfl23II	CGTACG	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	5 cut(s)	379, 456, 528, 710, 906
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
Ppu21I	YACGTR	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	626
Psp1406I	AACGTT	2 cut(s)	537, 561
Psp5II	RGGWCCY	1 cut(s)	626
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspLI	CGTACG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	360, 628, 922
PspPI	GGNCC	2 cut(s)	233, 626
PspPPI	RGGWCCY	1 cut(s)	626
PstNI	CAGNNNCTG	1 cut(s)	401
PsuI	RGATCY	6 cut(s)	91, 224, 284, 358, 406, 920
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	2 cut(s)	15, 169
RsaNI	GTAC	2 cut(s)	14, 168
RseI	CAYNNNNRTG	2 cut(s)	822, 855
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	3 cut(s)	426, 548, 970
SatI	GCNGC	5 cut(s)	378, 455, 527, 709, 905
Sau96I	GGNCC	2 cut(s)	233, 626
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	2 cut(s)	297, 735
SfaNI	GCATC	6 cut(s)	107, 200, 594, 750, 756, 891
SfuI	TTCGAA	1 cut(s)	308
SinI	GGWCC	2 cut(s)	233, 626
SmiMI	CAYNNNNRTG	2 cut(s)	822, 855
Sse9I	AATT	2 cut(s)	127, 967
SsiI	CCGC	8 cut(s)	351, 377, 380, 434, 452, 696, 702, 711
SspMI	CTAG	2 cut(s)	95, 288
StyD4I	CCNGG	2 cut(s)	295, 733
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	2 cut(s)	332, 347
TaiI	ACGT	5 cut(s)	220, 264, 480, 540, 564
TaqI	TCGA	3 cut(s)	251, 277, 308
TasI	AATT	2 cut(s)	127, 967
TatI	WGTACW	1 cut(s)	13
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	9 cut(s)	118, 172, 184, 305, 365, 392, 468, 730, 841
Tru1I	TTAA	3 cut(s)	426, 548, 970
Tru9I	TTAA	3 cut(s)	426, 548, 970
TseI	GCWGC	4 cut(s)	454, 526, 708, 904
TspDTI	ATGAA	2 cut(s)	548, 636
TspGWI	ACGGA	1 cut(s)	60
VpaK11BI	GGWCC	2 cut(s)	233, 626
XapI	RAATTY	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XspI	CTAG	2 cut(s)	95, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.