AT3G48570

Protein transport protein SEC61

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020852
Physical Location & Seq
Reverse (-)
18003818 .. 18005272
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48570.1

Sequence Viewer

Length: 210 bp
ATGGAAGCCATTGATTCCGCAATCGATCCTCTCAGAGATTTCGCTAAGAGCAGTGTTCGTCTCGTCCAGCGCTGTCACAAACCCGATCGCAAGGAATTCACGAAAGTAGCTGTGCGTACGGCGATTGGATTTGTGGTGATGGGATTCGTTGGATTCTTCGTGAAGCTCGTTTTCATCCCAATCAACAACATCATCGTTGGATCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

69

Amino Acids

7.68

Weight (kDa)

9.86

Isoelectric Point (pI)

24.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 13 - 65 1.5e-13 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48570
prunus_persica Prupe.5G150500_v2.0.a1 Prupe.5G150500_v2.0.a1 Prupe.5G150500_v2.0.a1 Prupe.5G150500_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AclWI GGATC 2 cut(s) 20, 208
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 118
AfeI AGCGCT 1 cut(s) 71
AluBI AGCT 2 cut(s) 110, 166
AluI AGCT 2 cut(s) 110, 166
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 20, 208
Aor51HI AGCGCT 1 cut(s) 71
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 148
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 73
Bsa29I ATCGAT 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 24
BseGI GGATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 46
Bsh1285I CGRYCG 1 cut(s) 88
BshVI ATCGAT 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 88
BsiWI CGTACG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 65
BsmBI CGTCTC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 25, 85, 200
BspACI CCGC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 45
BspDI ATCGAT 1 cut(s) 24
BspPI GGATC 2 cut(s) 20, 208
BssMI GATC 3 cut(s) 25, 85, 200
BstDEI CTNAG 3 cut(s) 32, 45, 207
BstF5I GGATG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 28, 88, 203
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 3 cut(s) 25, 85, 200
BstMCI CGRYCG 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 24
BsuTUI ATCGAT 1 cut(s) 24
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 24
Csp6I GTAC 1 cut(s) 117
CviJI RGCY 3 cut(s) 8, 110, 166
CviKI_1 RGCY 3 cut(s) 8, 110, 166
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 3 cut(s) 32, 45, 207
DpnI GATC 3 cut(s) 27, 87, 202
DpnII GATC 3 cut(s) 25, 85, 200
Eco47III AGCGCT 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 65
FokI GGATG 1 cut(s) 161
GlaI GCGC 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 73
HhaI GCGC 1 cut(s) 72
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 3 cut(s) 14, 144, 153
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 2 cut(s) 100, 160
HpyF3I CTNAG 3 cut(s) 32, 45, 207
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 25, 85, 200
LpnPI CCDG 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 27, 87, 202
MboI GATC 3 cut(s) 25, 85, 200
MboII GAAGA 2 cut(s) 148, 195
MflI RGATCY 1 cut(s) 200
MluCI AATT 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 130, 178
MnlI CCTC 1 cut(s) 39
NdeII GATC 3 cut(s) 25, 85, 200
NmuCI GTSAC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 3 cut(s) 14, 144, 153
Pfl23II CGTACG 1 cut(s) 116
Ple19I CGATCG 1 cut(s) 88
PspLI CGTACG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 200
PvuI CGATCG 1 cut(s) 88
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 25, 85, 200
SetI ASST 2 cut(s) 112, 168
SgeI CNNG 7 cut(s) 74, 79, 95, 103, 112, 172, 179
Sse9I AATT 1 cut(s) 95
SsiI CCGC 1 cut(s) 18
TaqI TCGA 1 cut(s) 24
TasI AATT 1 cut(s) 95
TfiI GAWTC 3 cut(s) 14, 144, 153
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.