Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027580

Physical Location & Seq

Genomic Coordinates Forward (+)

18488993 .. 18490997

Gene Structure 2005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGAGCTCCAAAGCTGAAGTGGACACCAGAAGAAGAAACAGCTCTTAAAGCTGGAGTACTTAAACATGGAACTGGAAAATGGCGTACCATTCTCTCAGATCCTGTGTATAGCACAATTCTGAAGTCTCGTTCTAATGTGGATCTCAAGGACAAATGGAGAAATATAAGTGTAACAGCTTTATGGGGATCTAGGAAGAAGGCTAAGCTTGCTCTTAAAAGAACTCCTTTGTCGGGTAGTAGGCAAGACGATAACGCTACAGCTATTACCATTGTGTCTTTAGCTAATGGTGATGTAGGAGGACAACAGATTGATGCACCATCTCCTCCTGCAGGTTCTTGTGAACCTCCAAGACCTTCTACAAGTGTGGATAAGATTATATTGGAGGCTATTACCAGCTTGAAGAGACCATTTGGTCCTGACGGAAAGTCGATCTTGATGTATATAGAGGAGAATTTCAAGATGCAACCGGATATGAAACGGCTTGTGACTTCAAGGCTGAAGTATTTGACAAATGTTGGAACATTAGTTAAGAAAAAGCACAAATACAGGATTTCTCAGAATTATATGGCTGAAGGAGAAGGACAAAGGTCTCCTCAACTCTTGTTGGAAGGAAACAAGGAAAACACTCCGAAACCGGAGGAGAATGGCGTCAAAAATCTTACTAAATCCCAAGTAGGTGGAGAAGTTATGATAATGGGTATGACAGAAAAAGAAGCTGCTGCAGCAGCTGCAAGAGCTGTGGCAGAAGCAGAATTTGCAATGGCAGAAGCTGAAGAAGCAGCAAGAGAGGCAGATAAAGCAGAAGCCGAAGCTGAAGCTGCCCATATTTTTGCAAAAGCGGCGATGAAAGCTGTGAAGTATAGAATGCATAGCCAAACTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

295

Amino Acids

32.25

Weight (kDa)

9.52

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 55	3.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49850 AT3G49850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	414
Acc36I	ACCTGC	1 cut(s)	323
AciI	CCGC	1 cut(s)	842
AclWI	GGATC	3 cut(s)	95, 150, 196
AcsI	RAATTY	2 cut(s)	454, 755
AcuI	CTGAAG	6 cut(s)	38, 143, 521, 594, 795, 837
AcyI	GRCGYC	1 cut(s)	651
AfaI	GTAC	2 cut(s)	60, 88
AfiI	CCNNNNNNNGG	2 cut(s)	233, 332
AgsI	TTSAA	3 cut(s)	403, 460, 495
AhdI	GACNNNNNGTC	1 cut(s)	427
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	3 cut(s)	132, 400, 597
AlwI	GGATC	3 cut(s)	95, 150, 196
AlwNI	CAGNNNCTG	3 cut(s)	104, 731, 773
ApeKI	GCWGC	7 cut(s)	719, 722, 725, 728, 731, 782, 821
ApoI	RAATTY	2 cut(s)	454, 755
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	7 cut(s)	706, 709, 718, 737, 740, 794, 808
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	1 cut(s)	497
BcoDI	GTCTC	3 cut(s)	132, 400, 597
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	3 cut(s)	258, 330, 723
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	8 cut(s)	720, 723, 726, 729, 732, 783, 822, 843
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	8 cut(s)	721, 724, 727, 730, 733, 784, 823, 844
BmcAI	AGTACT	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	416
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	416
BmsI	GCATC	2 cut(s)	304, 453
BoxI	GACNNNNGTC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	651
BsaI	GGTCTC	2 cut(s)	400, 597
BsaWI	WCCGGW	2 cut(s)	469, 637
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 332
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	768
BseLI	CCNNNNNNNGG	2 cut(s)	233, 332
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	2 cut(s)	111, 572
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	4 cut(s)	315, 464, 585, 656
BseXI	GCAGC	7 cut(s)	706, 709, 718, 737, 740, 794, 808
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	470, 638
BslI	CCNNNNNNNGG	2 cut(s)	233, 332
BsmAI	GTCTC	3 cut(s)	132, 400, 597
BsmI	GAATGC	1 cut(s)	873
Bso31I	GGTCTC	2 cut(s)	400, 597
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	100, 142, 188, 432
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	842
BspCNI	CTCAG	2 cut(s)	110, 571
BspMAI	CTGCAG	2 cut(s)	334, 727
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	3 cut(s)	95, 150, 196
BspTNI	GGTCTC	2 cut(s)	400, 597
BsrDI	GCAATG	1 cut(s)	768
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	4 cut(s)	100, 142, 188, 432
BssNI	GRCGYC	1 cut(s)	651
Bst6I	CTCTTC	1 cut(s)	398
BstACI	GRCGYC	1 cut(s)	651
BstAPI	GCANNNNNTGC	2 cut(s)	731, 758
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	3 cut(s)	97, 204, 558
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstKTI	GATC	4 cut(s)	103, 145, 191, 435
BstMAI	GTCTC	3 cut(s)	132, 400, 597
BstMBI	GATC	4 cut(s)	100, 142, 188, 432
BstPAI	GACNNNNGTC	1 cut(s)	589
BstSFI	CTRYAG	3 cut(s)	258, 330, 723
BstV1I	GCAGC	7 cut(s)	706, 709, 718, 737, 740, 794, 808
BstX2I	RGATCY	3 cut(s)	100, 142, 188
BstXI	CCANNNNNNTGG	1 cut(s)	680
BstYI	RGATCY	3 cut(s)	100, 142, 188
BtgZI	GCGATG	1 cut(s)	860
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	3 cut(s)	104, 731, 773
Cfr13I	GGNCC	1 cut(s)	416
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	2 cut(s)	59, 87
CspCI	CAANNNNNGTGG	2 cut(s)	723, 758
CviAII	CATG	1 cut(s)	68
CviQI	GTAC	2 cut(s)	59, 87
DdeI	CTNAG	3 cut(s)	97, 204, 558
DpnI	GATC	4 cut(s)	102, 144, 190, 434
DpnII	GATC	4 cut(s)	100, 142, 188, 432
DrdI	GACNNNNNNGTC	1 cut(s)	414
DriI	GACNNNNNGTC	1 cut(s)	427
DseDI	GACNNNNNNGTC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	398
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	398
Ecl136II	GAGCTC	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	2 cut(s)	400, 597
Eco47I	GGWCC	1 cut(s)	416
Eco53kI	GAGCTC	1 cut(s)	8
Eco57I	CTGAAG	6 cut(s)	38, 143, 521, 594, 795, 837
EcoICRI	GAGCTC	1 cut(s)	8
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	873
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	1 cut(s)	71
FalI	AAGNNNNNCTT	4 cut(s)	211, 243, 419, 451
FatI	CATG	1 cut(s)	67
Fnu4HI	GCNGC	8 cut(s)	720, 723, 726, 729, 732, 783, 822, 843
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	8 cut(s)	720, 723, 726, 729, 732, 783, 822, 843
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	8 cut(s)	720, 723, 726, 729, 732, 783, 822, 843
GsuI	CTGGAG	1 cut(s)	75
HapII	CCGG	2 cut(s)	470, 638
HgaI	GACGC	1 cut(s)	640
Hin1I	GRCGYC	1 cut(s)	651
Hin1II	CATG	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	206
HpaII	CCGG	2 cut(s)	470, 638
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	24, 344
Hpy188I	TCNGA	4 cut(s)	100, 123, 561, 633
Hpy188III	TCNNGA	3 cut(s)	419, 436, 460
Hpy8I	GTNNAC	2 cut(s)	24, 344
HpyAV	CCTTC	5 cut(s)	193, 366, 569, 575, 605
HpyCH4V	TGCA	8 cut(s)	317, 332, 466, 725, 734, 761, 836, 871
HpyF3I	CTNAG	3 cut(s)	97, 204, 558
Hsp92I	GRCGYC	1 cut(s)	651
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	4 cut(s)	100, 142, 188, 432
LmnI	GCTCC	2 cut(s)	5, 13
Lsp1109I	GCAGC	7 cut(s)	706, 709, 718, 737, 740, 794, 808
LweI	GCATC	2 cut(s)	304, 453
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	172, 487
MalI	GATC	4 cut(s)	102, 144, 190, 434
MboI	GATC	4 cut(s)	100, 142, 188, 432
MboII	GAAGA	5 cut(s)	44, 47, 208, 415, 788
MflI	RGATCY	3 cut(s)	100, 142, 188
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	4 cut(s)	117, 454, 562, 755
MmeI	TCCRAC	2 cut(s)	499, 588
MnlI	CCTC	8 cut(s)	293, 336, 357, 379, 442, 606, 634, 784
Mph1103I	ATGCAT	1 cut(s)	873
MseI	TTAA	4 cut(s)	48, 63, 216, 531
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	2 cut(s)	470, 638
Mva1269I	GAATGC	1 cut(s)	873
NdeII	GATC	4 cut(s)	100, 142, 188, 432
NlaIII	CATG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	487
NsiI	ATGCAT	1 cut(s)	873
PctI	GAATGC	1 cut(s)	873
PkrI	GCNGC	8 cut(s)	721, 724, 727, 730, 733, 784, 823, 844
PshAI	GACNNNNGTC	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	416
PstI	CTGCAG	2 cut(s)	334, 727
PstNI	CAGNNNCTG	3 cut(s)	104, 731, 773
PsuI	RGATCY	3 cut(s)	100, 142, 188
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	2 cut(s)	60, 88
RsaNI	GTAC	2 cut(s)	59, 87
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	4 cut(s)	48, 63, 216, 531
SatI	GCNGC	8 cut(s)	720, 723, 726, 729, 732, 783, 822, 843
Sau3AI	GATC	4 cut(s)	100, 142, 188, 432
Sau96I	GGNCC	1 cut(s)	416
SbfI	CCTGCAGG	1 cut(s)	334
ScaI	AGTACT	1 cut(s)	60
SdaI	CCTGCAGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	2 cut(s)	304, 453
SfcI	CTRYAG	3 cut(s)	258, 330, 723
SinI	GGWCC	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse8387I	CCTGCAGG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	117, 454, 562, 755
SsiI	CCGC	1 cut(s)	842
SspMI	CTAG	1 cut(s)	192
SstI	GAGCTC	1 cut(s)	10
TaqI	TCGA	1 cut(s)	431
TasI	AATT	4 cut(s)	117, 454, 562, 755
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	1 cut(s)	845
Tru1I	TTAA	4 cut(s)	48, 63, 216, 531
Tru9I	TTAA	4 cut(s)	48, 63, 216, 531
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	7 cut(s)	719, 722, 725, 728, 731, 782, 821
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	491, 863
TspGWI	ACGGA	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	2 cut(s)	454, 755
XcmI	CCANNNNNNNNNTGG	1 cut(s)	18
XspI	CTAG	1 cut(s)	192
ZrmI	AGTACT	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.