Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023770

Physical Location & Seq

Genomic Coordinates Reverse (-)

216812 .. 219926

Gene Structure 3115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGTCTTTGACAATGGCTGATGGTGTAGAAGCTGCAGCAGGAAGAAGTAAAAGACAAAACAGCTTATTAAGAAAACAACTTGCTTTAGCTGTAAGAAGTGTTCAATGGAGCTACGCAATCTTCTGGTCGTCTTCACTTACTCAACCTGGGGTTTTGGAGTGGGGAGAAGGATGTTACAATGGAGATATGAAGAAGAGGAAGAAGAGTTATGAATCTCATTATAAATATGGGTTGCAAAAAAGCAAGGAGCTTCGGAAACTTTATTTGTCTATGCTTGAAGGAGACAGTGGTACTACTGTTAGTACTACTCATGATAATCTCAATGATGATGATGATAATTGTCACAGTACAAGTATGATGCTGTCACCAGATGACCTCTCTGATGAAGAGTGGTACTATTTAGTCTCCATGTCCTATGTCTTCTCTCCTTCACAATGTTTGCCTGGAAGAGCTTCAGCGACGGGTGAGACCATATGGCTCTGCAACGCTCAATATGCGGAGAACAAGCTCTTCTCTCGTTCTTTGTTAGCAAGAAGCGCATCAATTCAGACTGTTGTGTGTTTCCCTTACTTGGGCGGAGTCATTGAGCTGGGCGTCACTGAATTGATTTCAGAAGACCATAACCTGCTTCGAAACATCAAATCTTGCTTGATGGAAATATCTGCACACCAAGACAACGATGACGAGAAGAAGATGGAGATTAAGATCAGTGAAGAGAAGCATCAGCTTCCATTAGGTATTTCTGATGAAGACTTGCATTACAAAAGAACCATTTCAACAGTACTCAACTACTCCGCAGATAGATCAGGTAAGAACGATAAGAACATTCGTCATCGTCAGCCAAATATTGTTACTTCTGAACCTGGCTCAAGTTTCTTGCGGTGGAAGCAATGTGAGCAGCAAGTCTCGGGTTTTGTTCAGAAAAAAAAGTCACAGAATGTGTTGCGGAAGATATTGCATGATGTCCCTTTGATGCACACAAAGAGAATGTTCCCAAGTCAGAACTCTGGTCTGAATCAAGATGATCCTTCAGATAGAAGAAAAGAGAACGAAAAGTTCAGTGTCCTTAGAACTATGGTTCCCACTGTCAACGAGGTTGATAAAGAATCGATACTAAACAACACAATCAAGTACCTGCAAGAACTGGAGGCAAGAGTAGAAGAGCTAGAATCTTGTATGGGATCAGTTAATTTTGTAGAAAGACAAAGAAAGACGACAGAGAACCTTAACGACTCTGTGTTGATCGAAGAGACATCAGGGAACTACGATGATAGCACGAAGATCGATGACAATTCAGGAGAAACCGAACAAGTCACTGTTTTCAGAGATAAGACACATTTGAGAGTTAAACTCAAAGAAACAGAAGTTGTGATCGAAGTAAGATGTTCTTACAGAGACTACATAGTTGCGGACATCATGGAAACTCTGAGCAATCTTCACATGGATGCTTTCTCTGTTAGATCTCACACGCTCAATAAGTTCCTCACATTGAATCTCAAGGCCAAGTTTCGCGGGGCTGCAGTTGCGTCCGTAGGAATGATTAAGCGAGAGCTGAGAAGAGTCATTGGTGATTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001101 GO:0001708 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009913 GO:0009957 GO:0009962 GO:0009963 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0032502 GO:0032870 GO:0032989 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048468 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060429 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

526

Amino Acids

59.99

Weight (kDa)

6.27

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	23 - 216	2.1e-49	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-TF_ACT-like_plant	PF22754	447 - 522	4.1e-14	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00480 AT4G00480 AT4G00480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
Acc36I	ACCTGC	2 cut(s)	633, 1143
AccII	CGCG	1 cut(s)	1512
AciI	CCGC	7 cut(s)	497, 576, 795, 880, 946, 1409, 1512
AclWI	GGATC	2 cut(s)	1019, 1189
AcuI	CTGAAG	2 cut(s)	438, 1014
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	6 cut(s)	292, 304, 349, 395, 783, 1133
AfiI	CCNNNNNNNGG	2 cut(s)	571, 572
AgsI	TTSAA	4 cut(s)	104, 278, 777, 1492
AjnI	CCWGG	3 cut(s)	145, 442, 862
AloI	GAACNNNNNNTCC	2 cut(s)	1063, 1095
Alw26I	GTCTC	6 cut(s)	276, 409, 461, 910, 1244, 1389
AlwI	GGATC	2 cut(s)	1019, 1189
Ama87I	CYCGRG	1 cut(s)	907
AoxI	GGCC	1 cut(s)	1500
ApeKI	GCWGC	4 cut(s)	32, 35, 898, 1517
Asp700I	GAANNNNTTC	2 cut(s)	451, 772
AspLEI	GCGC	1 cut(s)	539
AsuHPI	GGTGA	3 cut(s)	357, 476, 1580
AsuII	TTCGAA	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	907
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BbsI	GAAGAC	4 cut(s)	123, 412, 621, 756
BbvI	GCAGC	4 cut(s)	19, 47, 910, 1504
BccI	CCATC	3 cut(s)	14, 646, 688
BcgI	CGANNNNNNTGC	2 cut(s)	1264, 1298
BciT130I	CCWGG	3 cut(s)	147, 444, 864
BcoDI	GTCTC	6 cut(s)	276, 409, 461, 910, 1244, 1389
BfaI	CTAG	1 cut(s)	1166
BfmI	CTRYAG	2 cut(s)	33, 1518
BfuAI	ACCTGC	2 cut(s)	633, 1143
BglII	AGATCT	1 cut(s)	1460
BisI	GCNGC	4 cut(s)	33, 36, 899, 1518
BlsI	GCNGC	4 cut(s)	34, 37, 900, 1519
BmcAI	AGTACT	2 cut(s)	304, 783
Bme1390I	CCNGG	3 cut(s)	147, 444, 864
BmeT110I	CYCGRG	1 cut(s)	907
BmiI	GGNNCC	1 cut(s)	1080
BmrFI	CCNGG	3 cut(s)	147, 444, 864
BmsI	GCATC	5 cut(s)	348, 548, 730, 963, 1435
BpiI	GAAGAC	4 cut(s)	123, 412, 621, 756
BplI	GAGNNNNNCTC	2 cut(s)	1335, 1367
BpmI	CTGGAG	1 cut(s)	1166
Bpu14I	TTCGAA	1 cut(s)	631
BpuEI	CTTGAG	2 cut(s)	853, 1481
Bsa29I	ATCGAT	2 cut(s)	1109, 1284
BsaBI	GATNNNNATC	1 cut(s)	704
BsaHI	GRCGYC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 572
Bse1I	ACTGG	1 cut(s)	1149
Bse3DI	GCAATG	1 cut(s)	896
Bse8I	GATNNNNATC	1 cut(s)	704
BseBI	CCWGG	3 cut(s)	147, 444, 864
BseCI	ATCGAT	2 cut(s)	1109, 1284
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	2 cut(s)	176, 1450
BseJI	GATNNNNATC	1 cut(s)	704
BseLI	CCNNNNNNNGG	2 cut(s)	571, 572
BseMI	GCAATG	1 cut(s)	896
BseMII	CTCAG	2 cut(s)	1418, 1544
BseNI	ACTGG	1 cut(s)	1149
BseXI	GCAGC	4 cut(s)	19, 47, 910, 1504
BseYI	CCCAGC	1 cut(s)	589
BsgI	GTGCAG	1 cut(s)	648
Bsh1236I	CGCG	1 cut(s)	1512
BshFI	GGCC	1 cut(s)	1502
BshVI	ATCGAT	2 cut(s)	1109, 1284
BsiHKCI	CYCGRG	1 cut(s)	907
BslFI	GGGAC	1 cut(s)	950
BslI	CCNNNNNNNGG	2 cut(s)	571, 572
BsmAI	GTCTC	6 cut(s)	276, 409, 461, 910, 1244, 1389
BsmFI	GGGAC	1 cut(s)	950
BsnI	GGCC	1 cut(s)	1502
Bso31I	GGTCTC	1 cut(s)	461
BsoBI	CYCGRG	1 cut(s)	907
Bsp119I	TTCGAA	1 cut(s)	631
Bsp143I	GATC	8 cut(s)	705, 803, 1024, 1181, 1242, 1281, 1371, 1460
BspACI	CCGC	7 cut(s)	497, 576, 795, 880, 946, 1409, 1512
BspANI	GGCC	1 cut(s)	1502
BspCNI	CTCAG	2 cut(s)	1419, 1545
BspDI	ATCGAT	2 cut(s)	1109, 1284
BspFNI	CGCG	1 cut(s)	1512
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	1080
BspMAI	CTGCAG	2 cut(s)	37, 1522
BspMI	ACCTGC	2 cut(s)	633, 1143
BspPI	GGATC	2 cut(s)	1019, 1189
BspQI	GCTCTTC	3 cut(s)	442, 515, 1155
BspT104I	TTCGAA	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	896
BsrI	ACTGG	1 cut(s)	1149
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	8 cut(s)	705, 803, 1024, 1181, 1242, 1281, 1371, 1460
BssNI	GRCGYC	1 cut(s)	594
Bst2UI	CCWGG	3 cut(s)	147, 444, 864
Bst4CI	ACNGT	7 cut(s)	287, 298, 347, 553, 781, 1087, 1318
Bst6I	CTCTTC	9 cut(s)	188, 197, 381, 442, 515, 708, 1155, 1242, 1552
BstACI	GRCGYC	1 cut(s)	594
BstBI	TTCGAA	1 cut(s)	631
BstDEI	CTNAG	3 cut(s)	1067, 1427, 1553
BstF5I	GGATG	2 cut(s)	176, 1450
BstFNI	CGCG	1 cut(s)	1512
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	8 cut(s)	708, 806, 1027, 1184, 1245, 1284, 1374, 1463
BstMAI	GTCTC	6 cut(s)	276, 409, 461, 910, 1244, 1389
BstMBI	GATC	8 cut(s)	705, 803, 1024, 1181, 1242, 1281, 1371, 1460
BstMWI	GCNNNNNNNGC	5 cut(s)	494, 536, 886, 895, 1523
BstNI	CCWGG	3 cut(s)	147, 444, 864
BstSCI	CCNGG	3 cut(s)	145, 442, 862
BstSFI	CTRYAG	2 cut(s)	33, 1518
BstUI	CGCG	1 cut(s)	1512
BstV1I	GCAGC	4 cut(s)	19, 47, 910, 1504
BstV2I	GAAGAC	4 cut(s)	123, 412, 621, 756
BstX2I	RGATCY	1 cut(s)	1460
BstYI	RGATCY	1 cut(s)	1460
Bsu15I	ATCGAT	2 cut(s)	1109, 1284
BsuRI	GGCC	1 cut(s)	1502
BsuTUI	ATCGAT	2 cut(s)	1109, 1284
BtsCI	GGATG	2 cut(s)	176, 1450
BtsIMutI	CAGTG	6 cut(s)	292, 597, 715, 1066, 1083, 1314
BveI	ACCTGC	2 cut(s)	633, 1143
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	539
ClaI	ATCGAT	2 cut(s)	1109, 1284
CseI	GACGC	2 cut(s)	583, 1515
Csp6I	GTAC	6 cut(s)	291, 303, 348, 394, 782, 1132
CviAII	CATG	5 cut(s)	311, 409, 959, 1417, 1441
CviQI	GTAC	6 cut(s)	291, 303, 348, 394, 782, 1132
DdeI	CTNAG	3 cut(s)	1067, 1427, 1553
DpnI	GATC	8 cut(s)	707, 805, 1026, 1183, 1244, 1283, 1373, 1462
DpnII	GATC	8 cut(s)	705, 803, 1024, 1181, 1242, 1281, 1371, 1460
Eam1104I	CTCTTC	9 cut(s)	188, 197, 381, 442, 515, 708, 1155, 1242, 1552
EarI	CTCTTC	9 cut(s)	188, 197, 381, 442, 515, 708, 1155, 1242, 1552
EciI	GGCGGA	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	438, 1014
Eco88I	CYCGRG	1 cut(s)	907
EcoRII	CCWGG	3 cut(s)	145, 442, 862
FaeI	CATG	5 cut(s)	314, 412, 962, 1420, 1444
FalI	AAGNNNNNCTT	2 cut(s)	1372, 1404
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	5 cut(s)	310, 408, 958, 1416, 1440
FauI	CCCGC	1 cut(s)	1505
FauNDI	CATATG	1 cut(s)	473
Fnu4HI	GCNGC	4 cut(s)	33, 36, 899, 1518
FokI	GGATG	2 cut(s)	183, 1457
Fsp4HI	GCNGC	4 cut(s)	33, 36, 899, 1518
FspBI	CTAG	1 cut(s)	1166
GlaI	GCGC	1 cut(s)	538
GluI	GCNGC	4 cut(s)	33, 36, 899, 1518
GsaI	CCCAGC	1 cut(s)	593
GsuI	CTGGAG	1 cut(s)	1166
HaeIII	GGCC	1 cut(s)	1502
HgaI	GACGC	2 cut(s)	583, 1515
HhaI	GCGC	1 cut(s)	539
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	5 cut(s)	314, 412, 962, 1420, 1444
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	1090
HindII	GTYRAC	1 cut(s)	1090
HinfI	GANTC	8 cut(s)	212, 579, 1015, 1106, 1169, 1232, 1492, 1560
HphI	GGTGA	3 cut(s)	357, 476, 1580
Hpy166II	GTNNAC	1 cut(s)	1090
Hpy188III	TCNNGA	3 cut(s)	311, 1019, 1296
Hpy8I	GTNNAC	1 cut(s)	1090
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	4 cut(s)	161, 272, 438, 1038
HpyCH4III	ACNGT	7 cut(s)	287, 298, 347, 553, 781, 1087, 1318
HpyCH4V	TGCA	9 cut(s)	35, 235, 483, 665, 757, 958, 976, 1138, 1520
HpyF10VI	GCNNNNNNNGC	5 cut(s)	494, 536, 886, 895, 1523
HpyF3I	CTNAG	3 cut(s)	1067, 1427, 1553
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	5 cut(s)	314, 412, 962, 1420, 1444
HspAI	GCGC	1 cut(s)	537
Kzo9I	GATC	8 cut(s)	705, 803, 1024, 1181, 1242, 1281, 1371, 1460
LguI	GCTCTTC	3 cut(s)	442, 515, 1155
LmnI	GCTCC	2 cut(s)	108, 247
Lsp1109I	GCAGC	4 cut(s)	19, 47, 910, 1504
LweI	GCATC	5 cut(s)	348, 548, 730, 963, 1435
MaeI	CTAG	1 cut(s)	1166
MaeIII	GTNAC	7 cut(s)	173, 341, 363, 595, 850, 930, 1312
MalI	GATC	8 cut(s)	707, 805, 1026, 1183, 1244, 1283, 1373, 1462
MboI	GATC	8 cut(s)	705, 803, 1024, 1181, 1242, 1281, 1371, 1460
MflI	RGATCY	1 cut(s)	1460
MluCI	AATT	5 cut(s)	337, 543, 602, 1189, 1291
MlyI	GAGTC	3 cut(s)	588, 1226, 1569
MnlI	CCTC	5 cut(s)	189, 386, 1087, 1141, 1493
MroXI	GAANNNNTTC	2 cut(s)	451, 772
MseI	TTAA	7 cut(s)	68, 702, 1188, 1227, 1347, 1542, 1579
MslI	CAYNNNNRTG	1 cut(s)	1443
MspR9I	CCNGG	3 cut(s)	147, 444, 864
MvaI	CCWGG	3 cut(s)	147, 444, 864
MvnI	CGCG	1 cut(s)	1512
MwoI	GCNNNNNNNGC	5 cut(s)	494, 536, 886, 895, 1523
NdeI	CATATG	1 cut(s)	473
NdeII	GATC	8 cut(s)	705, 803, 1024, 1181, 1242, 1281, 1371, 1460
NlaIII	CATG	5 cut(s)	314, 412, 962, 1420, 1444
NlaIV	GGNNCC	1 cut(s)	1080
NmuCI	GTSAC	5 cut(s)	341, 363, 595, 930, 1312
NspV	TTCGAA	1 cut(s)	631
PagI	TCATGA	1 cut(s)	310
PciSI	GCTCTTC	3 cut(s)	442, 515, 1155
PdmI	GAANNNNTTC	2 cut(s)	451, 772
PfeI	GAWTC	5 cut(s)	212, 1015, 1106, 1169, 1492
PkrI	GCNGC	4 cut(s)	34, 37, 900, 1519
PleI	GAGTC	3 cut(s)	587, 1226, 1568
PpsI	GAGTC	3 cut(s)	587, 1226, 1568
PsiI	TTATAA	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	145, 442, 862
PspFI	CCCAGC	1 cut(s)	589
PspGI	CCWGG	3 cut(s)	145, 442, 862
PspN4I	GGNNCC	1 cut(s)	1080
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PstI	CTGCAG	2 cut(s)	37, 1522
PsuI	RGATCY	1 cut(s)	1460
RsaI	GTAC	6 cut(s)	292, 304, 349, 395, 783, 1133
RsaNI	GTAC	6 cut(s)	291, 303, 348, 394, 782, 1132
RseI	CAYNNNNRTG	1 cut(s)	1443
SapI	GCTCTTC	3 cut(s)	442, 515, 1155
SaqAI	TTAA	7 cut(s)	68, 702, 1188, 1227, 1347, 1542, 1579
SatI	GCNGC	4 cut(s)	33, 36, 899, 1518
Sau3AI	GATC	8 cut(s)	705, 803, 1024, 1181, 1242, 1281, 1371, 1460
ScaI	AGTACT	2 cut(s)	304, 783
SchI	GAGTC	3 cut(s)	588, 1226, 1569
ScrFI	CCNGG	3 cut(s)	147, 444, 864
SfaNI	GCATC	5 cut(s)	348, 548, 730, 963, 1435
SfcI	CTRYAG	2 cut(s)	33, 1518
SfuI	TTCGAA	1 cut(s)	631
SmiMI	CAYNNNNRTG	1 cut(s)	1443
SmlI	CTYRAG	2 cut(s)	868, 1496
SmoI	CTYRAG	2 cut(s)	868, 1496
Sse9I	AATT	5 cut(s)	337, 543, 602, 1189, 1291
SsiI	CCGC	7 cut(s)	497, 576, 795, 880, 946, 1409, 1512
SspI	AATATT	1 cut(s)	847
SspMI	CTAG	1 cut(s)	1166
StyD4I	CCNGG	3 cut(s)	145, 442, 862
TaaI	ACNGT	7 cut(s)	287, 298, 347, 553, 781, 1087, 1318
TaqI	TCGA	5 cut(s)	631, 1109, 1245, 1284, 1374
TasI	AATT	5 cut(s)	337, 543, 602, 1189, 1291
TatI	WGTACW	3 cut(s)	302, 347, 781
TfiI	GAWTC	5 cut(s)	212, 1015, 1106, 1169, 1492
Tru1I	TTAA	7 cut(s)	68, 702, 1188, 1227, 1347, 1542, 1579
Tru9I	TTAA	7 cut(s)	68, 702, 1188, 1227, 1347, 1542, 1579
TscAI	CASTG	6 cut(s)	292, 604, 715, 1066, 1090, 1321
TseFI	GTSAC	5 cut(s)	341, 363, 595, 930, 1312
TseI	GCWGC	4 cut(s)	32, 35, 898, 1517
Tsp45I	GTSAC	5 cut(s)	341, 363, 595, 930, 1312
TspDTI	ATGAA	4 cut(s)	203, 225, 399, 762
TspGWI	ACGGA	1 cut(s)	1519
TspRI	CASTG	6 cut(s)	292, 604, 715, 1066, 1090, 1321
XmnI	GAANNNNTTC	2 cut(s)	451, 772
XspI	CTAG	1 cut(s)	1166
ZrmI	AGTACT	2 cut(s)	304, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.