Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0022043

Physical Location & Seq

Genomic Coordinates Forward (+)

1153945 .. 1156356

Gene Structure 2412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G02640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAACAGTATCTTCTCCATTGACGATTTCTCCGATCCTTTCTGGGAAACTCCTCCGATTCCTCTCAATCCCGACTCTTCTAAGCCTGTTACGGCGGATGAAGTTAGCCAGAGTCAACCGGAATGGACTTTCGAGATGTTTCTCGAAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGGTAACAACAACAACGCGATCGTCGGTGTTTCTTCGGCGCAATCTCTTCCTTCTGTTTCCGGACAGAATGATTTCGAGGATGATAGTCGATTTCGTGATCGCGATTCGGGAAATTTGGATTGTGCTGCTCCCATGACGACGAAGACGGTGATTGTTGATTCCGATGATTATCGTCGTGTTCTTAAGAACAAGCTTGAGACTGAGTGCGCTACTGTTGTTTCTCTTCGGGTTGGGTCTGTGAAGCCTGAAGATTCGACTAGTTCTCCAGAAACTCAACTTCAACCAGTTCAATCCAGTCCTCTTACTCAAGGAGAACTTGGTGTTACTTCTTCCTTACCAGCTGAGGTGAAAAAAACTGGTGTATCAATGAAGCAGGTTACTAGTGGATCGTCGAGAGAATATTCTGATGACGAGGACCTTGATGAAGAGAATGAAACCACCGGTTCCTTGAAGCCAGAGGACGTTAAAAAATCTAGAAGGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAAGGAGAAAGCAGGAGCAAACAAGTGACCTCGAAACACAGGTTAATGATCTAAAAGGTGAGCATTCATCACTTCTTAAACAACTGAGCAACATGAATCACAAGTATGACGAGGCTGCTGTTGGCAATAGAATACTAAAGGCTGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCGTGAAGAGAGTAACAGGAATGAATCCGATGCTTCTCGGAAGATCAAGTGGACATAACAACAACAACAGAATGCCAATAACTGGTAACAACAGGATGGATTCTTCTAGCATTATTCCAGCTTATCAACCACACTCAAACCTAAACCATATGTCAAACCAAAACATCGGGATCCCAACCATTCTACCTCCAAGACTCGGAAACAATTTCGCTGCTCCTCCATCCCAAACCAGCTCTCCCTTGCAGAGAATTAGAAATGGGCAAAATCACCATGTTACTCCAAGCGCCAACCCGTATGGCTGGAATACCGAACCTCAGAACGATTCAGCATGGCCGAAAAAATGCGTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0002240 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012501 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034050 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0046982 GO:0046983 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000034 GO:2000112 GO:2000241 GO:2000243 GO:2000693 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1 bZIP_C

Protein Analysis

411

Amino Acids

45.36

Weight (kDa)

5.3

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_Maf	PF03131	220 - 281	2.5e-06	bZIP Maf transcription factor
bZIP_1	PF00170	221 - 275	3.4e-14	bZIP transcription factor
bZIP_2	PF07716	223 - 271	1.5e-07	Basic region leucine zipper
bZIP_C	PF12498	290 - 343	1.5e-10	Basic leucine-zipper C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02640 AT4G02640 AT4G02640 AT4G02640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	965
AccII	CGCG	2 cut(s)	200, 285
AccIII	TCCGGA	1 cut(s)	242
AciI	CCGC	3 cut(s)	95, 164, 875
AclWI	GGATC	4 cut(s)	29, 577, 1048, 1061
AcoI	YGGCCR	1 cut(s)	1214
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	450
AfiI	CCNNNNNNNGG	2 cut(s)	965, 1079
AflII	CTTAAG	1 cut(s)	365
AgeI	ACCGGT	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	464, 473, 634
AhlI	ACTAGT	2 cut(s)	440, 563
AluBI	AGCT	7 cut(s)	171, 376, 524, 686, 860, 1004, 1116
AluI	AGCT	7 cut(s)	171, 376, 524, 686, 860, 1004, 1116
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	2 cut(s)	374, 842
AlwI	GGATC	4 cut(s)	29, 577, 1048, 1061
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	1 cut(s)	1214
ApeKI	GCWGC	3 cut(s)	308, 812, 1094
ApoI	RAATTY	1 cut(s)	295
ArsI	GACNNNNNNTTYG	2 cut(s)	665, 697
AsiGI	ACCGGT	1 cut(s)	623
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	3 cut(s)	223, 392, 1169
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	6 cut(s)	178, 343, 541, 767, 877, 1142
AvaII	GGWCC	1 cut(s)	598
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BamHI	GGATCC	1 cut(s)	1053
BanII	GRGCYC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	3 cut(s)	295, 799, 1081
BccI	CCATC	2 cut(s)	973, 1111
BceAI	ACGGC	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	374, 842
BcuI	ACTAGT	2 cut(s)	440, 563
BfaI	CTAG	6 cut(s)	441, 564, 657, 687, 696, 990
BfoI	RGCGCY	1 cut(s)	1170
BfrI	CTTAAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	3 cut(s)	309, 813, 1095
BlsI	GCNGC	3 cut(s)	310, 814, 1096
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	2 cut(s)	628, 1055
BmsI	GCATC	2 cut(s)	654, 903
BpiI	GAAGAC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	2 cut(s)	525, 861
BpuEI	CTTGAG	2 cut(s)	398, 474
BsaBI	GATNNNNATC	1 cut(s)	351
BsaWI	WCCGGW	3 cut(s)	118, 242, 623
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 430, 460, 1102, 1132
Bsc4I	CCNNNNNNNGG	2 cut(s)	965, 1079
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	4 cut(s)	467, 477, 544, 970
Bse8I	GATNNNNATC	1 cut(s)	351
BseAI	TCCGGA	1 cut(s)	242
BseGI	GGATG	5 cut(s)	103, 268, 669, 984, 1103
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	965, 1079
BseMII	CTCAG	5 cut(s)	165, 375, 516, 773, 1211
BseNI	ACTGG	4 cut(s)	467, 477, 544, 970
BseRI	GAGGAG	2 cut(s)	42, 1089
BseXI	GCAGC	3 cut(s)	295, 799, 1081
Bsh1236I	CGCG	2 cut(s)	200, 285
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	1216
BshTI	ACCGGT	1 cut(s)	623
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	119, 243, 624
BslI	CCNNNNNNNGG	2 cut(s)	965, 1079
BsmAI	GTCTC	2 cut(s)	374, 842
BsmI	GAATGC	2 cut(s)	760, 960
BsnI	GGCC	1 cut(s)	1216
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp13I	TCCGGA	1 cut(s)	242
Bsp143I	GATC	8 cut(s)	34, 201, 280, 569, 692, 745, 926, 1053
Bsp68I	TCGCGA	1 cut(s)	285
BspACI	CCGC	3 cut(s)	95, 164, 875
BspANI	GGCC	1 cut(s)	1216
BspCNI	CTCAG	5 cut(s)	166, 376, 517, 774, 1210
BspEI	TCCGGA	1 cut(s)	242
BspFNI	CGCG	2 cut(s)	200, 285
BspLI	GGNNCC	2 cut(s)	628, 1055
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	4 cut(s)	29, 577, 1048, 1061
BspTI	CTTAAG	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	4 cut(s)	467, 477, 544, 970
BssAI	RCCGGY	1 cut(s)	623
BssMI	GATC	8 cut(s)	34, 201, 280, 569, 692, 745, 926, 1053
Bst4CI	ACNGT	4 cut(s)	8, 331, 397, 886
Bst6I	CTCTTC	6 cut(s)	82, 141, 234, 411, 603, 884
BstAFI	CTTAAG	1 cut(s)	365
BstDEI	CTNAG	7 cut(s)	81, 174, 384, 525, 782, 861, 1197
BstF5I	GGATG	5 cut(s)	103, 268, 669, 984, 1103
BstFNI	CGCG	2 cut(s)	200, 285
BstH2I	RGCGCY	1 cut(s)	1170
BstHHI	GCGC	3 cut(s)	223, 392, 1169
BstKTI	GATC	8 cut(s)	37, 204, 283, 572, 695, 748, 929, 1056
BstMAI	GTCTC	2 cut(s)	374, 842
BstMBI	GATC	8 cut(s)	34, 201, 280, 569, 692, 745, 926, 1053
BstMCI	CGRYCG	1 cut(s)	204
BstUI	CGCG	2 cut(s)	200, 285
BstV1I	GCAGC	3 cut(s)	295, 799, 1081
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	1053
BstYI	RGATCY	1 cut(s)	1053
BsuRI	GGCC	1 cut(s)	1216
BtsCI	GGATG	5 cut(s)	103, 268, 669, 984, 1103
BtuMI	TCGCGA	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	547
CfoI	GCGC	3 cut(s)	223, 392, 1169
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	598
CspAI	ACCGGT	1 cut(s)	623
CviAII	CATG	4 cut(s)	316, 790, 1154, 1212
DdeI	CTNAG	7 cut(s)	81, 174, 384, 525, 782, 861, 1197
DpnI	GATC	8 cut(s)	36, 203, 282, 571, 694, 747, 928, 1055
DpnII	GATC	8 cut(s)	34, 201, 280, 569, 692, 745, 926, 1053
EaeI	YGGCCR	1 cut(s)	1214
Eam1104I	CTCTTC	6 cut(s)	82, 141, 234, 411, 603, 884
EarI	CTCTTC	6 cut(s)	82, 141, 234, 411, 603, 884
EciI	GGCGGA	2 cut(s)	110, 890
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	4 cut(s)	319, 793, 1157, 1215
FaiI	YATR	9 cut(s)	317, 791, 804, 939, 1032, 1034, 1155, 1179, 1213
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FatI	CATG	4 cut(s)	315, 789, 1153, 1211
FauNDI	CATATG	1 cut(s)	1032
Fnu4HI	GCNGC	3 cut(s)	309, 813, 1095
FokI	GGATG	5 cut(s)	110, 275, 676, 991, 1090
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	309, 813, 1095
FspBI	CTAG	6 cut(s)	441, 564, 657, 687, 696, 990
GlaI	GCGC	3 cut(s)	222, 391, 1168
GluI	GCNGC	3 cut(s)	309, 813, 1095
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	1170
HaeIII	GGCC	1 cut(s)	1216
HapII	CCGG	3 cut(s)	119, 243, 624
HhaI	GCGC	3 cut(s)	223, 392, 1169
Hin1II	CATG	4 cut(s)	319, 793, 1157, 1215
Hin6I	GCGC	3 cut(s)	221, 390, 1167
HinP1I	GCGC	3 cut(s)	221, 390, 1167
HincII	GTYRAC	1 cut(s)	116
HindII	GTYRAC	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	374
HpaII	CCGG	3 cut(s)	119, 243, 624
HphI	GGTGA	6 cut(s)	178, 343, 541, 767, 877, 1142
Hpy166II	GTNNAC	3 cut(s)	116, 935, 1231
Hpy188I	TCNGA	9 cut(s)	34, 57, 175, 346, 589, 912, 923, 1082, 1200
Hpy8I	GTNNAC	3 cut(s)	116, 935, 1231
Hpy99I	CGWCG	5 cut(s)	163, 209, 325, 360, 577
HpyAV	CCTTC	3 cut(s)	243, 654, 693
HpyCH4III	ACNGT	4 cut(s)	8, 331, 397, 886
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	1 cut(s)	1126
HpyF3I	CTNAG	7 cut(s)	81, 174, 384, 525, 782, 861, 1197
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	4 cut(s)	319, 793, 1157, 1215
HspAI	GCGC	3 cut(s)	221, 390, 1167
Kpn2I	TCCGGA	1 cut(s)	242
Kzo9I	GATC	8 cut(s)	34, 201, 280, 569, 692, 745, 926, 1053
LmnI	GCTCC	3 cut(s)	316, 712, 1102
Lsp1109I	GCAGC	3 cut(s)	295, 799, 1081
LweI	GCATC	2 cut(s)	654, 903
MaeI	CTAG	6 cut(s)	441, 564, 657, 687, 696, 990
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	8 cut(s)	88, 185, 505, 559, 722, 895, 968, 1156
MalI	GATC	8 cut(s)	36, 203, 282, 571, 694, 747, 928, 1055
MboI	GATC	8 cut(s)	34, 201, 280, 569, 692, 745, 926, 1053
MflI	RGATCY	1 cut(s)	1053
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	3 cut(s)	295, 1087, 1131
MlyI	GAGTC	4 cut(s)	68, 121, 689, 1071
MroI	TCCGGA	1 cut(s)	242
MroXI	GAANNNNTTC	1 cut(s)	254
MseI	TTAA	5 cut(s)	366, 648, 741, 774, 854
MslI	CAYNNNNRTG	1 cut(s)	801
MspA1I	CMGCKG	1 cut(s)	524
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	3 cut(s)	119, 243, 624
Mva1269I	GAATGC	2 cut(s)	760, 960
MvnI	CGCG	2 cut(s)	200, 285
NdeI	CATATG	1 cut(s)	1032
NdeII	GATC	8 cut(s)	34, 201, 280, 569, 692, 745, 926, 1053
NlaIII	CATG	4 cut(s)	319, 793, 1157, 1215
NlaIV	GGNNCC	2 cut(s)	628, 1055
NmuCI	GTSAC	1 cut(s)	722
NruI	TCGCGA	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	2 cut(s)	760, 960
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	8 cut(s)	58, 287, 341, 434, 793, 907, 983, 1205
PflMI	CCANNNNNTGG	1 cut(s)	965
PinAI	ACCGGT	1 cut(s)	623
PkrI	GCNGC	3 cut(s)	310, 814, 1096
Ple19I	CGATCG	1 cut(s)	204
PleI	GAGTC	4 cut(s)	68, 120, 688, 1071
PpsI	GAGTC	4 cut(s)	68, 120, 688, 1071
PpuMI	RGGWCCY	1 cut(s)	598
Psp124BI	GAGCTC	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	628, 1055
PspPI	GGNCC	1 cut(s)	598
PspPPI	RGGWCCY	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	1053
PvuI	CGATCG	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	524
RruI	TCGCGA	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	801
SacI	GAGCTC	1 cut(s)	173
SaqAI	TTAA	5 cut(s)	366, 648, 741, 774, 854
SatI	GCNGC	3 cut(s)	309, 813, 1095
Sau3AI	GATC	8 cut(s)	34, 201, 280, 569, 692, 745, 926, 1053
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	4 cut(s)	68, 121, 689, 1071
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	2 cut(s)	654, 903
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	3 cut(s)	365, 377, 489
SmoI	CTYRAG	3 cut(s)	365, 377, 489
SpeI	ACTAGT	2 cut(s)	440, 563
Sse9I	AATT	3 cut(s)	295, 1087, 1131
SsiI	CCGC	3 cut(s)	95, 164, 875
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	6 cut(s)	441, 564, 657, 687, 696, 990
SstI	GAGCTC	1 cut(s)	173
TaaI	ACNGT	4 cut(s)	8, 331, 397, 886
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	7 cut(s)	132, 144, 258, 271, 437, 575, 729
TasI	AATT	3 cut(s)	295, 1087, 1131
TfiI	GAWTC	8 cut(s)	58, 287, 341, 434, 793, 907, 983, 1205
Tru1I	TTAA	5 cut(s)	366, 648, 741, 774, 854
Tru9I	TTAA	5 cut(s)	366, 648, 741, 774, 854
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	3 cut(s)	308, 812, 1094
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	8 cut(s)	17, 114, 566, 621, 630, 753, 806, 920
Van91I	CCANNNNNTGG	1 cut(s)	965
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	2 cut(s)	656, 695
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	6 cut(s)	441, 564, 657, 687, 696, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.