AT4G04260

heterochromatin assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0027097
Physical Location & Seq
Forward (+)
2054037 .. 2055849
1813 bp
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UTR
Exon/CDS
Intron
AT4G04260.2

Sequence Viewer

Length: 582 bp
ATGCGTCCATCAGATGCTGGTAAAGCTCCTTACGTGGCGCGTGTTGAGAAGATTGAAGCAGATGCAAGGAACAATGTGAAGGTGCATTGTCGATGGTACTATTGTCCTGAAGAATCACATGGGGGAAGGAGACAGCTCCATGGAGCTAAAGAGCTTTTCTTGTCTGATCACTTCGATGTTCAAAGTGCACACACCATTGAAGGAAAATGTATAGTTCACACCTTTAAAAACTACACGAGGCTTGAAAATGTTGGAGTGGAAGATTATTACTGTATATTTGACTATAAAGCTGCTACTGGCGCGTTTACTCCTGATCGAGTTGCTGTGTACTACAAATGTGAAATGCCGTATAACTCAGATGAACTGATGGAGTTACTACTATGTCATTATAGGGTTCACCTAGCGTGTGTAGGCGTGACGATTGAAGAAGCCAAGAAGCTGGAACACTTTGTATGTGTTGAATGCAGCTCTGACGAAGATGGAGTCAAAAGATTTCAGAACGGGTTTGCTTCATCAACAACCAATGATCTTAAGCCAAGCGCCGAAAAGATGATCGATGTAAGAGCCTCTTATGAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006342 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016458 GO:0017053 GO:0019219 GO:0019222 GO:0022607 GO:0031056 GO:0031057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0031400 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0035064 GO:0035065 GO:0035067 GO:0040029 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044212 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071840 GO:0080090 GO:0090351 GO:0090568 GO:0097159 GO:0140030 GO:0140034 GO:1901363 GO:1901983 GO:1901984 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH PHD

Protein Analysis

193

Amino Acids

22.08

Weight (kDa)

5.85

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 9 - 117 8.1e-20 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027097)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04260 AT4G04260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 40, 302
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 2 cut(s) 98, 329
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 6 cut(s) 56, 182, 200, 245, 425, 461
AluBI AGCT 7 cut(s) 26, 136, 146, 154, 290, 439, 468
AluI AGCT 7 cut(s) 26, 136, 146, 154, 290, 439, 468
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 186
AlwNI CAGNNNCTG 1 cut(s) 17
ApaLI GTGCAC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 290, 465
ArsI GACNNNNNNTTYG 2 cut(s) 468, 500
AspLEI GCGC 3 cut(s) 40, 302, 542
AsuHPI GGTGA 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 190
BaeI ACNNNNGTAYC 2 cut(s) 88, 121
BauI CACGAG 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 277, 477
BccI CCATC 4 cut(s) 16, 87, 361, 473
BceAI ACGGC 1 cut(s) 331
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 401
BfoI RGCGCY 1 cut(s) 543
BfrI CTTAAG 1 cut(s) 530
BisI GCNGC 2 cut(s) 291, 466
BlsI GCNGC 2 cut(s) 292, 467
BmsI GCATC 2 cut(s) 4, 52
Bsa29I ATCGAT 1 cut(s) 555
BsaAI YACGTR 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 301
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 301
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 2 cut(s) 277, 477
Bsh1236I CGCG 2 cut(s) 40, 302
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 4 cut(s) 166, 313, 526, 552
Bsp19I CCATGG 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 368
BspDI ATCGAT 1 cut(s) 555
BspFNI CGCG 2 cut(s) 40, 302
BspTI CTTAAG 1 cut(s) 530
BsrI ACTGG 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 4 cut(s) 166, 313, 526, 552
BssSI CACGAG 1 cut(s) 235
BssT1I CCWWGG 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 272
BstAFI CTTAAG 1 cut(s) 530
BstBAI YACGTR 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 355
BstDSI CCRYGG 1 cut(s) 139
BstFNI CGCG 2 cut(s) 40, 302
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 3 cut(s) 40, 302, 542
BstKTI GATC 4 cut(s) 169, 316, 529, 555
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 4 cut(s) 166, 313, 526, 552
BstMWI GCNNNNNNNGC 2 cut(s) 23, 299
BstSLI GKGCMC 1 cut(s) 190
BstUI CGCG 2 cut(s) 40, 302
BstV1I GCAGC 2 cut(s) 277, 477
BstXI CCANNNNNNTGG 1 cut(s) 439
Bsu15I ATCGAT 1 cut(s) 555
BsuTUI ATCGAT 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 139
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 3 cut(s) 40, 302, 542
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 2 cut(s) 97, 328
CviAII CATG 2 cut(s) 119, 140
CviQI GTAC 2 cut(s) 97, 328
DdeI CTNAG 1 cut(s) 355
DpnI GATC 4 cut(s) 168, 315, 528, 554
DpnII GATC 4 cut(s) 166, 313, 526, 552
DraI TTTAAA 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 122, 143
FalI AAGNNNNNCTT 1 cut(s) 553
FatI CATG 2 cut(s) 118, 139
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 291, 466
Fsp4HI GCNGC 2 cut(s) 291, 466
FspBI CTAG 1 cut(s) 401
GlaI GCGC 3 cut(s) 39, 301, 541
GluI GCNGC 2 cut(s) 291, 466
HaeII RGCGCY 1 cut(s) 543
HhaI GCGC 3 cut(s) 40, 302, 542
Hin1II CATG 2 cut(s) 122, 143
Hin6I GCGC 3 cut(s) 38, 300, 540
HinP1I GCGC 3 cut(s) 38, 300, 540
HinfI GANTC 2 cut(s) 113, 483
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 5 cut(s) 188, 217, 306, 328, 397
Hpy188I TCNGA 5 cut(s) 13, 166, 358, 472, 498
Hpy188III TCNNGA 2 cut(s) 107, 311
Hpy8I GTNNAC 5 cut(s) 188, 217, 306, 328, 397
HpyAV CCTTC 3 cut(s) 73, 120, 194
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 65, 85, 188, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 299
HpyF3I CTNAG 1 cut(s) 355
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 122, 143
HspAI GCGC 3 cut(s) 38, 300, 540
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 4 cut(s) 166, 313, 526, 552
LmnI GCTCC 3 cut(s) 31, 141, 143
LpnPI CCDG 5 cut(s) 3, 120, 282, 324, 425
Lsp1109I GCAGC 2 cut(s) 277, 477
LweI GCATC 2 cut(s) 4, 52
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 372, 415
MalI GATC 4 cut(s) 168, 315, 528, 554
MboI GATC 4 cut(s) 166, 313, 526, 552
MboII GAAGA 5 cut(s) 61, 122, 272, 437, 488
MhlI GDGCHC 1 cut(s) 190
MlyI GAGTC 1 cut(s) 492
MmeI TCCRAC 1 cut(s) 232
MnlI CCTC 2 cut(s) 231, 577
MseI TTAA 2 cut(s) 225, 531
MslI CAYNNNNRTG 1 cut(s) 174
MspCI CTTAAG 1 cut(s) 530
Mva1269I GAATGC 1 cut(s) 467
MvnI CGCG 2 cut(s) 40, 302
MwoI GCNNNNNNNGC 2 cut(s) 23, 299
NcoI CCATGG 1 cut(s) 139
NdeII GATC 4 cut(s) 166, 313, 526, 552
NlaIII CATG 2 cut(s) 122, 143
NmuCI GTSAC 1 cut(s) 415
PctI GAATGC 1 cut(s) 467
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 292, 467
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Ppu21I YACGTR 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 2 cut(s) 98, 329
RsaNI GTAC 2 cut(s) 97, 328
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 2 cut(s) 225, 531
SatI GCNGC 2 cut(s) 291, 466
Sau3AI GATC 4 cut(s) 166, 313, 526, 552
SchI GAGTC 1 cut(s) 492
SduI GDGCHC 1 cut(s) 190
SfaNI GCATC 2 cut(s) 4, 52
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
SspMI CTAG 1 cut(s) 401
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 36
TaqI TCGA 4 cut(s) 91, 174, 316, 555
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 225, 531
Tru9I TTAA 2 cut(s) 225, 531
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 290, 465
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 375, 501
Vha464I CTTAAG 1 cut(s) 530
VneI GTGCAC 1 cut(s) 186
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.