Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023587

Physical Location & Seq

Genomic Coordinates Reverse (-)

7053437 .. 7055740

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTCATCATCATCATCAACGACGACGAACACAACAACAGAATCAGATTCATCATCTCTACCTACTCACATCGGTAGATCAAATTCCGACGGAATCATCGACACTACACCATTTCTTCCTCCCACCGTTACAAGAACCATAAGCGTAGATGAAGAATCCAATCCAATTCATCGATCCGCTAGACGACAAGGTCTAAGAGAAGCAGCGAGGTTCCTCCGTCACGCTGGTAGCCGGAGAATGATGCGTGAACCATCGATGCTCGTTAGAGAAACCGCTGCTGAGCAATTAGAAGAGAGACAAAGTGATTGGGCGTATTCTAAACCTGTGGTGTTTCTTGACATTTTGTGGAATCTTGCTTTTGTTGCCATCGGTGTTGCTGTTCTGATACTTAGCCGTGACGAGAAGCCTAATATGCCGTTGAGAGTTTGGGTTGTTGGTTATGGGATTCAATGTTGGTTACATATGGCTTGTGTTTGTGTTGAGTATAGGCGGAGGAGACGACGACGTCACCCGGAGGATGGTGGTGGTTCTGGGTTGACGAATTCTTCGTCGCAGCAATATGTTTCGTTAGCGCAATTGGAGGATAGAGGAGAGACTAGTAATCCTGCGAAGCATCTTGAATCAGCCAATACGATGTTCTCATTCATCTGGTGGATAATTGGATTCTACTGGGTTTCTGCAGGAGGCCAAACACTATCTAGTGACTCTCCTCAGCTCTATTGGCTGTGTATCATTTTTCTCGGTTTCGATGTTTTCTTTGTTGTGTTCTGTGTTGCATTGGCTTGTGTTATCGGCCTTGCTGTTTGCTGTTGTCTTCCATGTATAATTGCAATTCTATATGCTGTTGCCGACCAGGAGGGAGCATCGAAGAACGACATAGATCAAATGCCGAAATTCAGATTTACAAAAACTGGCAATGTTGAAAAGCTCTCAGGCAAAGCACGGGGAATAATGACGGAATGTGGAACAGATTCACCTATTGAACGCTCGCTCTCTCCAGAAGACGCGGAATGCTGCATCTGTCTCTGTGAATATGAAGATGGAGTTGAACTTAGAGAACTCCCTTGTAACCATCACTTTCATTGCACTTGCATCGATAAATGGCTTCATATAAACTCACGTTGCCCGCTCTGCAAGTTTAACATCTTGAAGAACGCAAACAACGAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031090 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098588 GO:0098805 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

390

Amino Acids

43.74

Weight (kDa)

6.09

Isoelectric Point (pI)

66.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	337 - 379	1.3e-13	Ring finger domain
zf-RING_11	PF17123	337 - 365	1.2e-07	RING-like zinc finger
zf-rbx1	PF12678	337 - 379	1.8e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023587)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11680 AT4G11680
pyrus_communis	pycom07g12210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	189, 504
AatII	GACGTC	1 cut(s)	508
AccBSI	CCGCTC	1 cut(s)	1129
AccII	CGCG	1 cut(s)	1007
AciI	CCGC	5 cut(s)	177, 273, 490, 1007, 1127
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	3 cut(s)	82, 541, 893
AcyI	GRCGYC	1 cut(s)	505
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	6 cut(s)	449, 620, 923, 983, 1049, 1150
AhlI	ACTAGT	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	852
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	2 cut(s)	715, 928
AluI	AGCT	2 cut(s)	715, 928
Alw26I	GTCTC	4 cut(s)	289, 490, 587, 1028
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	2 cut(s)	685, 793
ApeKI	GCWGC	4 cut(s)	203, 275, 553, 1014
ApoI	RAATTY	3 cut(s)	82, 541, 893
ArsI	GACNNNNNNTTYG	4 cut(s)	529, 533, 561, 565
Asp700I	GAANNNNTTC	1 cut(s)	970
AspLEI	GCGC	1 cut(s)	574
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	500, 966
BbsI	GAAGAC	2 cut(s)	806, 1008
BbvCI	CCTCAGC	1 cut(s)	711
BbvI	GCAGC	4 cut(s)	215, 262, 565, 1001
BccI	CCATC	5 cut(s)	259, 374, 512, 1034, 1080
BceAI	ACGGC	2 cut(s)	378, 400
BcgI	CGANNNNNNTGC	2 cut(s)	1075, 1109
BciT130I	CCWGG	1 cut(s)	854
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	4 cut(s)	289, 490, 587, 1028
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	4 cut(s)	180, 597, 699, 1171
BfmI	CTRYAG	1 cut(s)	678
BisI	GCNGC	4 cut(s)	204, 276, 554, 1015
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	4 cut(s)	205, 277, 555, 1016
Bme1390I	CCNGG	2 cut(s)	512, 854
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	512, 854
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	6 cut(s)	231, 246, 622, 872, 1026, 1101
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	2 cut(s)	806, 1008
BpmI	CTGGAG	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	512
Bsa29I	ATCGAT	3 cut(s)	172, 254, 1095
BsaHI	GRCGYC	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	2 cut(s)	674, 916
Bse3DI	GCAATG	2 cut(s)	922, 1081
BseBI	CCWGG	1 cut(s)	854
BseCI	ATCGAT	3 cut(s)	172, 254, 1095
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	2 cut(s)	922, 1081
BseMII	CTCAG	3 cut(s)	270, 725, 945
BseNI	ACTGG	2 cut(s)	674, 916
BseRI	GAGGAG	3 cut(s)	508, 603, 699
BseXI	GCAGC	4 cut(s)	215, 262, 565, 1001
Bsh1236I	CGCG	1 cut(s)	1007
BshFI	GGCC	2 cut(s)	687, 795
BshVI	ATCGAT	3 cut(s)	172, 254, 1095
BsiSI	CCGG	2 cut(s)	232, 512
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	4 cut(s)	289, 490, 587, 1028
BsmBI	CGTCTC	1 cut(s)	490
BsmI	GAATGC	1 cut(s)	1016
BsnI	GGCC	2 cut(s)	687, 795
Bsp143I	GATC	3 cut(s)	77, 173, 880
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	5 cut(s)	177, 273, 490, 1007, 1127
BspANI	GGCC	2 cut(s)	687, 795
BspCNI	CTCAG	3 cut(s)	271, 724, 944
BspDI	ATCGAT	3 cut(s)	172, 254, 1095
BspFNI	CGCG	1 cut(s)	1007
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	1129
BsrDI	GCAATG	2 cut(s)	922, 1081
BsrI	ACTGG	2 cut(s)	674, 916
BssMI	GATC	3 cut(s)	77, 173, 880
BssNI	GRCGYC	1 cut(s)	505
Bst2UI	CCWGG	1 cut(s)	854
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	989, 1127
BstDEI	CTNAG	6 cut(s)	194, 279, 389, 711, 931, 1052
BstF5I	GGATG	1 cut(s)	523
BstFNI	CGCG	1 cut(s)	1007
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	3 cut(s)	80, 176, 883
BstMAI	GTCTC	4 cut(s)	289, 490, 587, 1028
BstMBI	GATC	3 cut(s)	77, 173, 880
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 412, 721, 1131
BstNI	CCWGG	1 cut(s)	854
BstSCI	CCNGG	2 cut(s)	510, 852
BstSFI	CTRYAG	1 cut(s)	678
BstUI	CGCG	1 cut(s)	1007
BstV1I	GCAGC	4 cut(s)	215, 262, 565, 1001
BstV2I	GAAGAC	2 cut(s)	806, 1008
Bsu15I	ATCGAT	3 cut(s)	172, 254, 1095
BsuRI	GGCC	2 cut(s)	687, 795
BsuTUI	ATCGAT	3 cut(s)	172, 254, 1095
BtsCI	GGATG	1 cut(s)	523
Cac8I	GCNNGC	2 cut(s)	989, 1127
CfoI	GCGC	1 cut(s)	574
ClaI	ATCGAT	3 cut(s)	172, 254, 1095
CseI	GACGC	1 cut(s)	1013
CviAII	CATG	1 cut(s)	819
DdeI	CTNAG	6 cut(s)	194, 279, 389, 711, 931, 1052
DpnI	GATC	3 cut(s)	79, 175, 882
DpnII	GATC	3 cut(s)	77, 173, 880
DrdI	GACNNNNNNGTC	2 cut(s)	189, 504
DseDI	GACNNNNNNGTC	2 cut(s)	189, 504
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	852
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	1 cut(s)	822
FatI	CATG	1 cut(s)	818
FauI	CCCGC	1 cut(s)	1134
FauNDI	CATATG	1 cut(s)	462
Fnu4HI	GCNGC	4 cut(s)	204, 276, 554, 1015
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	4 cut(s)	204, 276, 554, 1015
FspBI	CTAG	4 cut(s)	180, 597, 699, 1171
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	4 cut(s)	204, 276, 554, 1015
GsuI	CTGGAG	1 cut(s)	981
HaeIII	GGCC	2 cut(s)	687, 795
HapII	CCGG	2 cut(s)	232, 512
HgaI	GACGC	1 cut(s)	1013
HhaI	GCGC	1 cut(s)	574
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	1 cut(s)	822
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HincII	GTYRAC	1 cut(s)	537
HindII	GTYRAC	1 cut(s)	537
HpaII	CCGG	2 cut(s)	232, 512
HphI	GGTGA	2 cut(s)	500, 966
Hpy166II	GTNNAC	2 cut(s)	248, 537
Hpy188I	TCNGA	4 cut(s)	46, 88, 384, 899
Hpy188III	TCNNGA	4 cut(s)	335, 617, 998, 1147
Hpy8I	GTNNAC	2 cut(s)	248, 537
Hpy99I	CGWCG	6 cut(s)	25, 28, 92, 504, 507, 553
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	505, 1120
HpyCH4V	TGCA	7 cut(s)	680, 776, 830, 1017, 1086, 1092, 1134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 412, 721, 1131
HpyF3I	CTNAG	6 cut(s)	194, 279, 389, 711, 931, 1052
HpySE526I	ACGT	2 cut(s)	505, 1120
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	1 cut(s)	822
HspAI	GCGC	1 cut(s)	572
Kzo9I	GATC	3 cut(s)	77, 173, 880
LmnI	GCTCC	1 cut(s)	860
Lsp1109I	GCAGC	4 cut(s)	215, 262, 565, 1001
LweI	GCATC	6 cut(s)	231, 246, 622, 872, 1026, 1101
MaeI	CTAG	4 cut(s)	180, 597, 699, 1171
MaeII	ACGT	2 cut(s)	505, 1120
MaeIII	GTNAC	7 cut(s)	127, 218, 395, 456, 506, 701, 1067
MalI	GATC	3 cut(s)	79, 175, 882
MbiI	CCGCTC	1 cut(s)	1129
MboI	GATC	3 cut(s)	77, 173, 880
MboII	GAAGA	9 cut(s)	107, 164, 302, 537, 806, 880, 1013, 1049, 1162
MfeI	CAATTG	1 cut(s)	575
MluCI	AATT	9 cut(s)	82, 165, 284, 541, 575, 657, 825, 831, 893
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	970
MseI	TTAA	1 cut(s)	1140
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	232, 512
MspR9I	CCNGG	2 cut(s)	512, 854
MunI	CAATTG	1 cut(s)	575
Mva1269I	GAATGC	1 cut(s)	1016
MvaI	CCWGG	1 cut(s)	854
MvnI	CGCG	1 cut(s)	1007
MwoI	GCNNNNNNNGC	4 cut(s)	362, 412, 721, 1131
NciI	CCSGG	1 cut(s)	512
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	3 cut(s)	77, 173, 880
NlaIII	CATG	1 cut(s)	822
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	4 cut(s)	218, 395, 506, 701
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 545, 1161
PctI	GAATGC	1 cut(s)	1016
PdmI	GAANNNNTTC	1 cut(s)	970
PfeI	GAWTC	9 cut(s)	41, 47, 93, 155, 349, 445, 620, 663, 971
PflFI	GACNNNGTC	2 cut(s)	189, 504
PkrI	GCNGC	4 cut(s)	205, 277, 555, 1016
PleI	GAGTC	1 cut(s)	698
PpsI	GAGTC	1 cut(s)	698
Psp6I	CCWGG	1 cut(s)	852
PspGI	CCWGG	1 cut(s)	852
PspN4I	GGNNCC	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	682
PsyI	GACNNNGTC	2 cut(s)	189, 504
SaqAI	TTAA	1 cut(s)	1140
SatI	GCNGC	4 cut(s)	204, 276, 554, 1015
Sau3AI	GATC	3 cut(s)	77, 173, 880
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	2 cut(s)	512, 854
SetI	ASST	9 cut(s)	64, 193, 212, 325, 508, 717, 930, 979, 1123
SfaNI	GCATC	6 cut(s)	231, 246, 622, 872, 1026, 1101
SfcI	CTRYAG	1 cut(s)	678
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	9 cut(s)	82, 165, 284, 541, 575, 657, 825, 831, 893
SsiI	CCGC	5 cut(s)	177, 273, 490, 1007, 1127
SspMI	CTAG	4 cut(s)	180, 597, 699, 1171
StyD4I	CCNGG	2 cut(s)	510, 852
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	508, 1123
TaqI	TCGA	6 cut(s)	99, 172, 254, 747, 866, 1095
TasI	AATT	9 cut(s)	82, 165, 284, 541, 575, 657, 825, 831, 893
TfiI	GAWTC	9 cut(s)	41, 47, 93, 155, 349, 445, 620, 663, 971
Tru1I	TTAA	1 cut(s)	1140
Tru9I	TTAA	1 cut(s)	1140
TseFI	GTSAC	4 cut(s)	218, 395, 506, 701
TseI	GCWGC	4 cut(s)	203, 275, 553, 1014
Tsp45I	GTSAC	4 cut(s)	218, 395, 506, 701
TspDTI	ATGAA	7 cut(s)	39, 158, 165, 634, 1050, 1070, 1097
TspGWI	ACGGA	3 cut(s)	105, 206, 971
Tth111I	GACNNNGTC	2 cut(s)	189, 504
XapI	RAATTY	3 cut(s)	82, 541, 893
XmnI	GAANNNNTTC	1 cut(s)	970
XspI	CTAG	4 cut(s)	180, 597, 699, 1171
ZraI	GACGTC	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.