Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021956

Physical Location & Seq

Genomic Coordinates Forward (+)

7147865 .. 7149942

Gene Structure 2078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCGTTACTTCGCTTCTCGATACCGTTTTCCGACGTAGAAAGAAGAAGTCTACTGAGTTTATAAGCTTTTTCGAATTCGACTTGGACACCATTAAAGCTGCAACAAATGATTTCTCAGAACTGGTTGGTCGTGGCGGATTTGGTTTTGTTTACAAGGGTAGGCTTCAAAATGGACAAGAAATAGCAGTCAAGATTTTGTCTACAAGTTCAATTAGAACTGAGAGACAGTTTCATAACGAACTTATTATTTTGTCTAAGCTTAAACACAAGAATCTGATCAATCTTCTTGGTTTCTGCACTAAACGAGACCAACATGGTCTTGTTTACGAGTTCATGCCTAACTCAAGCCTCGATTGTTTTATACTCGACCCACACAGAGCTGCTCAGCTAAATTGGGAGATGTGCCGAAACATTATTGATGGCATAGCTCGAGGGCTACGTTACCTTCATGAAGAATCCGGGTTATGGGTCGTTCACCGCGACATTAAACCTGGAAACATTCTATTGGATTCAGATTTGAAACCGAAAATAGTGGGATTTGAATTGGCGAGGACGATGCAACAAGGTGAAAACGCAGCTGAAACAACTGAAATTGTCGGTACCGTAGGGTATTTAGATCCGGAGTACATACGAAGCGGACGTGTTTCCGTCAAATCTGACGTTTATGCCTTTGGAGTTACAATCTTGACGATCATTAGCAGAAGGAAGGCTTGGAGTGTGGACGGAGACTCTCTAATCAAATATGTTAGGAGATGCTGGAACAGAGGAGAAGCCATAGATGTGATCCATGAAGTGATGAGGGAAGAAGAAAGAGAATATTCGATAAGCGAAATCTTGAGATACATTCACATTGCTTTGCTATGTGTGGATGAGAATGCTGAGAGAAGGCCGAATATTGATAAAGTTCTGCATTGGTTTAGTTGTTTCTCTACTCCTTTACCTGATCCAACATTTGGTAATAGATTTCTTGTAGAGGAAGAAACAAATTGGCCCTGGTCGCCATCTTTATCTCCTGGTCACAGCTCTGTCACGTCACCCATATCTTCACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009966 GO:0009987 GO:0010646 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023051 GO:0031347 GO:0031349 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1901419 GO:1901564 GO:1905957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

351

Amino Acids

40.23

Weight (kDa)

6.81

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	42 - 307	2.6e-41	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	43 - 308	3.4e-46	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11890 AT4G11890 AT4G11890 AT4G11890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	602
AccB7I	CCANNNNNTGG	1 cut(s)	956
AccI	GTMKAC	2 cut(s)	53, 203
AccII	CGCG	1 cut(s)	483
AccIII	TCCGGA	1 cut(s)	622
AciI	CCGC	3 cut(s)	138, 481, 639
AclWI	GGATC	3 cut(s)	614, 781, 941
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	2 cut(s)	604, 629
AfiI	CCNNNNNNNGG	2 cut(s)	468, 956
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	4 cut(s)	170, 213, 523, 545
AjiI	CACGTC	2 cut(s)	644, 1035
AjnI	CCWGG	3 cut(s)	493, 995, 1015
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AluBI	AGCT	8 cut(s)	69, 101, 262, 383, 391, 431, 581, 1026
AluI	AGCT	8 cut(s)	69, 101, 262, 383, 391, 431, 581, 1026
Alw26I	GTCTC	3 cut(s)	220, 303, 723
AlwI	GGATC	3 cut(s)	614, 781, 941
Ama87I	CYCGRG	1 cut(s)	432
Aor13HI	TCCGGA	1 cut(s)	622
AoxI	GGCC	3 cut(s)	3, 890, 992
ApeKI	GCWGC	3 cut(s)	101, 383, 578
ApoI	RAATTY	1 cut(s)	77
Asp718I	GGTACC	1 cut(s)	602
AspS9I	GGNCC	1 cut(s)	993
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	3 cut(s)	470, 581, 1029
AsuII	TTCGAA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	602
BbvI	GCAGC	3 cut(s)	88, 370, 590
BccI	CCATC	2 cut(s)	416, 1012
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	3 cut(s)	495, 997, 1017
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	220, 303, 723
BisI	GCNGC	3 cut(s)	102, 384, 579
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	3 cut(s)	103, 385, 580
Bme1390I	CCNGG	4 cut(s)	463, 495, 997, 1017
BmeT110I	CYCGRG	1 cut(s)	432
BmgBI	CACGTC	2 cut(s)	644, 1035
BmgT120I	GGNCC	1 cut(s)	993
BmiI	GGNNCC	1 cut(s)	604
BmrFI	CCNGG	4 cut(s)	463, 495, 997, 1017
BmsI	GCATC	2 cut(s)	549, 746
Bpu1102I	GCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	331, 859
BpuMI	CCSGG	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	995
BsaWI	WCCGGW	1 cut(s)	622
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 956
Bse1I	ACTGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	852
BseAI	TCCGGA	1 cut(s)	622
BseBI	CCWGG	3 cut(s)	495, 997, 1017
BseDI	CCNNGG	1 cut(s)	995
BseGI	GGATG	1 cut(s)	877
BseLI	CCNNNNNNNGG	2 cut(s)	468, 956
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	5 cut(s)	48, 132, 213, 401, 873
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	783
BseXI	GCAGC	3 cut(s)	88, 370, 590
BsgI	GTGCAG	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	3 cut(s)	5, 892, 994
BshNI	GGYRCC	1 cut(s)	602
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	462, 623
BslI	CCNNNNNNNGG	2 cut(s)	468, 956
BsmAI	GTCTC	3 cut(s)	220, 303, 723
BsmI	GAATGC	1 cut(s)	883
BsnI	GGCC	3 cut(s)	5, 892, 994
Bso31I	GGTCTC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	432
Bsp119I	TTCGAA	1 cut(s)	75
Bsp13I	TCCGGA	1 cut(s)	622
Bsp143I	GATC	5 cut(s)	279, 619, 693, 786, 946
Bsp1720I	GCTNAGC	1 cut(s)	387
BspACI	CCGC	3 cut(s)	138, 481, 639
BspANI	GGCC	3 cut(s)	5, 892, 994
BspCNI	CTCAG	5 cut(s)	49, 131, 214, 400, 874
BspEI	TCCGGA	1 cut(s)	622
BspFNI	CGCG	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	604
BspPI	GGATC	3 cut(s)	614, 781, 941
BspT104I	TTCGAA	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	852
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	995
BssMI	GATC	5 cut(s)	279, 619, 693, 786, 946
Bst2UI	CCWGG	3 cut(s)	495, 997, 1017
Bst4CI	ACNGT	3 cut(s)	28, 231, 607
BstBI	TTCGAA	1 cut(s)	75
BstDEI	CTNAG	6 cut(s)	57, 118, 222, 258, 387, 882
BstF5I	GGATG	1 cut(s)	877
BstFNI	CGCG	1 cut(s)	483
BstKTI	GATC	5 cut(s)	282, 622, 696, 789, 949
BstMAI	GTCTC	3 cut(s)	220, 303, 723
BstMBI	GATC	5 cut(s)	279, 619, 693, 786, 946
BstMWI	GCNNNNNNNGC	1 cut(s)	1000
BstNI	CCWGG	3 cut(s)	495, 997, 1017
BstSCI	CCNGG	4 cut(s)	461, 493, 995, 1015
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	88, 370, 590
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	5, 892, 994
BtrI	CACGTC	2 cut(s)	644, 1035
BtsCI	GGATG	1 cut(s)	877
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	993
Csp6I	GTAC	2 cut(s)	603, 628
CviAII	CATG	4 cut(s)	317, 337, 452, 791
CviQI	GTAC	2 cut(s)	603, 628
DdeI	CTNAG	6 cut(s)	57, 118, 222, 258, 387, 882
DpnI	GATC	5 cut(s)	281, 621, 695, 788, 948
DpnII	GATC	5 cut(s)	279, 619, 693, 786, 946
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	432
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	3 cut(s)	493, 995, 1015
FaeI	CATG	4 cut(s)	320, 340, 455, 794
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FatI	CATG	4 cut(s)	316, 336, 451, 790
FbaI	TGATCA	1 cut(s)	279
FblI	GTMKAC	2 cut(s)	53, 203
Fnu4HI	GCNGC	3 cut(s)	102, 384, 579
FokI	GGATG	1 cut(s)	884
Fsp4HI	GCNGC	3 cut(s)	102, 384, 579
GluI	GCNGC	3 cut(s)	102, 384, 579
HaeIII	GGCC	3 cut(s)	5, 892, 994
HapII	CCGG	2 cut(s)	462, 623
Hin1II	CATG	4 cut(s)	320, 340, 455, 794
HindIII	AAGCTT	2 cut(s)	67, 260
HinfI	GANTC	4 cut(s)	274, 458, 512, 731
HpaII	CCGG	2 cut(s)	462, 623
HphI	GGTGA	3 cut(s)	470, 581, 1029
Hpy166II	GTNNAC	6 cut(s)	54, 154, 204, 328, 478, 724
Hpy188I	TCNGA	5 cut(s)	35, 121, 279, 517, 661
Hpy188III	TCNNGA	6 cut(s)	20, 193, 452, 623, 688, 838
Hpy8I	GTNNAC	6 cut(s)	54, 154, 204, 328, 478, 724
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	4 cut(s)	458, 699, 703, 882
HpyCH4III	ACNGT	3 cut(s)	28, 231, 607
HpyCH4IV	ACGT	6 cut(s)	37, 442, 643, 663, 1034, 1051
HpyCH4V	TGCA	4 cut(s)	104, 300, 562, 913
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1000
HpyF3I	CTNAG	6 cut(s)	57, 118, 222, 258, 387, 882
HpySE526I	ACGT	6 cut(s)	37, 442, 643, 663, 1034, 1051
Hsp92II	CATG	4 cut(s)	320, 340, 455, 794
Kpn2I	TCCGGA	1 cut(s)	622
KpnI	GGTACC	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	5 cut(s)	279, 619, 693, 786, 946
Lsp1109I	GCAGC	3 cut(s)	88, 370, 590
LweI	GCATC	2 cut(s)	549, 746
MaeII	ACGT	6 cut(s)	37, 442, 643, 663, 1034, 1051
MaeIII	GTNAC	6 cut(s)	7, 443, 679, 1019, 1030, 1035
MalI	GATC	5 cut(s)	281, 621, 695, 788, 948
MboI	GATC	5 cut(s)	279, 619, 693, 786, 946
MboII	GAAGA	7 cut(s)	58, 278, 467, 818, 821, 992, 1038
MflI	RGATCY	1 cut(s)	619
MluCI	AATT	6 cut(s)	77, 213, 394, 545, 594, 988
MlyI	GAGTC	1 cut(s)	725
MmeI	TCCRAC	2 cut(s)	58, 974
MnlI	CCTC	6 cut(s)	362, 428, 546, 761, 795, 970
MroI	TCCGGA	1 cut(s)	622
MseI	TTAA	4 cut(s)	96, 264, 489, 1054
MslI	CAYNNNNRTG	1 cut(s)	782
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	2 cut(s)	462, 623
MspR9I	CCNGG	4 cut(s)	463, 495, 997, 1017
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	3 cut(s)	495, 997, 1017
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	1000
NciI	CCSGG	1 cut(s)	463
NdeII	GATC	5 cut(s)	279, 619, 693, 786, 946
NlaIII	CATG	4 cut(s)	320, 340, 455, 794
NlaIV	GGNNCC	1 cut(s)	604
NmuCI	GTSAC	3 cut(s)	1019, 1030, 1035
NspV	TTCGAA	1 cut(s)	75
PaeR7I	CTCGAG	1 cut(s)	432
PagI	TCATGA	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	3 cut(s)	439, 480, 640
PctI	GAATGC	1 cut(s)	883
PfeI	GAWTC	3 cut(s)	274, 458, 512
PflMI	CCANNNNNTGG	1 cut(s)	956
PkrI	GCNGC	3 cut(s)	103, 385, 580
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
PsiI	TTATAA	1 cut(s)	65
Psp6I	CCWGG	3 cut(s)	493, 995, 1015
PspGI	CCWGG	3 cut(s)	493, 995, 1015
PspN4I	GGNNCC	1 cut(s)	604
PspPI	GGNCC	1 cut(s)	993
PspXI	VCTCGAGB	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	619
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	604, 629
RsaNI	GTAC	2 cut(s)	603, 628
RseI	CAYNNNNRTG	1 cut(s)	782
SaqAI	TTAA	4 cut(s)	96, 264, 489, 1054
SatI	GCNGC	3 cut(s)	102, 384, 579
Sau3AI	GATC	5 cut(s)	279, 619, 693, 786, 946
Sau96I	GGNCC	1 cut(s)	993
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	4 cut(s)	463, 495, 997, 1017
SfaNI	GCATC	2 cut(s)	549, 746
Sfr274I	CTCGAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	782
SmlI	CTYRAG	3 cut(s)	346, 432, 838
SmoI	CTYRAG	3 cut(s)	346, 432, 838
Sse9I	AATT	6 cut(s)	77, 213, 394, 545, 594, 988
SsiI	CCGC	3 cut(s)	138, 481, 639
SspI	AATATT	2 cut(s)	821, 898
StyD4I	CCNGG	4 cut(s)	461, 493, 995, 1015
TaaI	ACNGT	3 cut(s)	28, 231, 607
TaiI	ACGT	6 cut(s)	40, 445, 646, 666, 1037, 1054
TaqI	TCGA	7 cut(s)	21, 75, 81, 354, 369, 433, 824
TasI	AATT	6 cut(s)	77, 213, 394, 545, 594, 988
TatI	WGTACW	1 cut(s)	627
TfiI	GAWTC	3 cut(s)	274, 458, 512
Tru1I	TTAA	4 cut(s)	96, 264, 489, 1054
Tru9I	TTAA	4 cut(s)	96, 264, 489, 1054
TseFI	GTSAC	3 cut(s)	1019, 1030, 1035
TseI	GCWGC	3 cut(s)	101, 383, 578
Tsp45I	GTSAC	3 cut(s)	1019, 1030, 1035
TspDTI	ATGAA	5 cut(s)	224, 325, 440, 468, 807
TspGWI	ACGGA	2 cut(s)	640, 741
Van91I	CCANNNNNTGG	1 cut(s)	956
XapI	RAATTY	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	432
XmiI	GTMKAC	2 cut(s)	53, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.