AT4G12670
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0027161
Physical Location & Seq
Forward (+)
7472006 .. 7475051
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12670.1

Sequence Viewer

Length: 1500 bp
ATGCTGACTGACAAGTCTAGGAAGGGATGTAGAGAGAGTTTAGGAGGAGTAGATGTGGGTTTAATGATGGAGAAAGAAGCTGGAGGTGTTGAGAATGTAGTGGAGGTTAATGTTTCTGGAGCAAGTGGTATGGTTAGTGGGAAGAGAAGGGAAGGTGATGGATTAAACAATAAATGGATAGTGATCGAGAAGAGTCAGAAAATGCAAAAAGTTGCTGCTGAAACTCATTCTCGGGAAAATTCTAAGGCTGATGATATTGATTCGGATAAGGGAAGAAAGCAGCGAGGAAGATTTAATGAGAAGAATTATGAAATTTCATATGCGTGCATTTCTAATGCAGGTGAGGGAAGAAAGGGAAGGGTAAGAAGAGGTAATGAGAAAAATCATCAAGCACCAGAAGCGCACAGTATTGATGTTGGTGGGGAAAGAAAGCGACAGAGAAGATGCGATGATATAAACCATGAAAAAGCACAACCGCACAGTTTTGCTGTTGGTATCAAAACAAAAGAGAAGAGGAGATACAGTGAGAAGAACCAGCAAAACAAAACAGTTGCAACTACTCATGAACACGACGTCTTAACTAATGATGGAAGAACAGAAGCCCGCGATTCTGATTTCGGTGAGGGAAGAAGTGGGCAAGGATGTTTCCATGAGAATAACCAGCAAACGAAAGTGTCGTCTACTGAAAGATGCGAGCAGGAAATCCCTAGGACCAATAAAAGAGTGTCACTCGGTTCTGGATTAGGGGAGGGGCGATATCGGGAGGGAAGACATATTGAAAAGAATCAGCATACCGAAACTGTTAAAACTGAAACTCATGGGAAGGAAGTTTCTAAGGATAGGAAGAGAAAGCGGGAAAGAGGAGTGGAAAGAGATGGGGATGAGTTCTATTTGGCGGAGAATCAAGACAGACAATGCCAAGCTGATATGAGAAATGATGATGTGGCCTTCAATAAGCAAGCGACTGGTTTCAGCACAGTTGAACAAGTAGAGCGAAAGTCTGTATCATCTATTTCATCTCCGGAGTCTACAAACAATGTTAACGACCCTAATGTTGCTTTTCAAGAGTTAGCTTTGATCATCCACCCTAAGGCTGGTGTACAAGAACAACCTATCGAAGCACGACCTTTACGCTCTGTCTCTTCGAAGAAACCATCTTTTCAACCTGAAAAATACGGACACAAAAGTTACCTGGAGAAGAATGGACCTGCGTCTAATGATCCCGCACAAAGTGCTACAAAAAGGAAAAGACGATTTTGGACGCTGGCAGAAGTAGAGATGCTTAGGGTTGGTGTGCAGAAATTCCCTGGCGAGAGGAATATTCCATGGCGCAAAATCTTGCAATTTGGTCGGGATGTGTTTCATGATGAACGGGCTCCAAGCGACCTCAAGGACAAGTGGAAGACGTTAAACAAAATTCCTTCTGACACGGGGAAATGGGTAAGCCTTTCAACTGAAAGACAACCGAATTACTATGTGTCTGAAGTTAGTTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

499

Amino Acids

56.55

Weight (kDa)

9.29

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12670 AT4G12670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 329
AasI GACNNNNNNGTC 1 cut(s) 13
AatII GACGTC 1 cut(s) 576
Acc36I ACCTGC 2 cut(s) 329, 1216
AccI GTMKAC 2 cut(s) 680, 1028
AccII CGCG 1 cut(s) 606
AccIII TCCGGA 1 cut(s) 1021
AciI CCGC 5 cut(s) 476, 604, 853, 896, 1224
AclWI GGATC 1 cut(s) 1214
AcsI RAATTY 4 cut(s) 238, 312, 1301, 1416
AcyI GRCGYC 1 cut(s) 573
AdeI CACNNNGTG 1 cut(s) 1232
AfaI GTAC 1 cut(s) 1101
AfiI CCNNNNNNNGG 2 cut(s) 1090, 1094
AgsI TTSAA 6 cut(s) 779, 952, 983, 1064, 1163, 1452
AjnI CCWGG 2 cut(s) 1191, 1306
AluBI AGCT 3 cut(s) 80, 923, 1073
AluI AGCT 3 cut(s) 80, 923, 1073
Alw26I GTCTC 1 cut(s) 1144
AlwI GGATC 1 cut(s) 1214
Ama87I CYCGRG 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 1021
AoxI GGCC 1 cut(s) 945
ApeKI GCWGC 2 cut(s) 215, 280
ApoI RAATTY 4 cut(s) 238, 312, 1301, 1416
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AspA2I CCTAGG 1 cut(s) 707
AspLEI GCGC 2 cut(s) 403, 1332
AspS9I GGNCC 2 cut(s) 711, 1205
AsuHPI GGTGA 3 cut(s) 167, 353, 632
AsuII TTCGAA 1 cut(s) 1145
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 2 cut(s) 711, 1205
AvrII CCTAGG 1 cut(s) 707
AxyI CCTNAGG 1 cut(s) 1089
BanII GRGCYC 1 cut(s) 1378
BarI GAAGNNNNNNTAC 2 cut(s) 503, 535
BbsI GAAGAC 2 cut(s) 775, 1409
BbvI GCAGC 2 cut(s) 202, 292
BccI CCATC 5 cut(s) 61, 152, 581, 869, 1162
BcgI CGANNNNNNTGC 2 cut(s) 1331, 1365
BciT130I CCWGG 2 cut(s) 1193, 1308
BclI TGATCA 1 cut(s) 1077
BcoDI GTCTC 1 cut(s) 1144
BfaI CTAG 2 cut(s) 18, 708
BfuAI ACCTGC 2 cut(s) 329, 1216
BisI GCNGC 2 cut(s) 216, 281
BlnI CCTAGG 1 cut(s) 707
BlsI GCNGC 2 cut(s) 217, 282
Bme1390I CCNGG 2 cut(s) 1193, 1308
Bme18I GGWCC 2 cut(s) 711, 1205
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 2 cut(s) 711, 1205
BmiI GGNNCC 1 cut(s) 1377
BmrFI CCNGG 2 cut(s) 1193, 1308
BmsI GCATC 3 cut(s) 434, 680, 1269
BoxI GACNNNNGTC 1 cut(s) 1210
BpiI GAAGAC 2 cut(s) 775, 1409
BplI GAGNNNNNCTC 2 cut(s) 714, 746
BpmI CTGGAG 3 cut(s) 102, 138, 1214
Bpu10I CCTNAGC 1 cut(s) 1283
Bpu14I TTCGAA 1 cut(s) 1145
BpuEI CTTGAG 1 cut(s) 1373
BsaBI GATNNNNATC 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 573
BsaJI CCNNGG 3 cut(s) 707, 1306, 1325
BsaWI WCCGGW 1 cut(s) 1021
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 508, 538
Bsc4I CCNNNNNNNGG 2 cut(s) 1090, 1094
Bse1I ACTGG 1 cut(s) 970
Bse21I CCTNAGG 1 cut(s) 1089
Bse8I GATNNNNATC 1 cut(s) 182
BseAI TCCGGA 1 cut(s) 1021
BseBI CCWGG 2 cut(s) 1193, 1308
BseDI CCNNGG 3 cut(s) 707, 1306, 1325
BseGI GGATG 5 cut(s) 32, 647, 886, 1080, 1360
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 1090, 1094
BseNI ACTGG 1 cut(s) 970
BseRI GAGGAG 3 cut(s) 60, 529, 876
BseXI GCAGC 2 cut(s) 202, 292
BsgI GTGCAG 1 cut(s) 1316
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 1 cut(s) 947
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 1022
BslI CCNNNNNNNGG 2 cut(s) 1090, 1094
BsmAI GTCTC 1 cut(s) 1144
BsnI GGCC 1 cut(s) 947
BsoBI CYCGRG 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 1145
Bsp1286I GDGCHC 1 cut(s) 1378
Bsp13I TCCGGA 1 cut(s) 1021
Bsp1407I TGTACA 1 cut(s) 1099
Bsp143I GATC 3 cut(s) 183, 1077, 1219
Bsp19I CCATGG 1 cut(s) 1325
BspACI CCGC 5 cut(s) 476, 604, 853, 896, 1224
BspANI GGCC 1 cut(s) 947
BspEI TCCGGA 1 cut(s) 1021
BspFNI CGCG 1 cut(s) 606
BspHI TCATGA 2 cut(s) 562, 1363
BspLI GGNNCC 1 cut(s) 1377
BspMI ACCTGC 2 cut(s) 329, 1216
BspPI GGATC 1 cut(s) 1214
BspT104I TTCGAA 1 cut(s) 1145
BsrGI TGTACA 1 cut(s) 1099
BsrI ACTGG 1 cut(s) 970
BssECI CCNNGG 3 cut(s) 707, 1306, 1325
BssMI GATC 3 cut(s) 183, 1077, 1219
BssNI GRCGYC 1 cut(s) 573
BssT1I CCWWGG 2 cut(s) 707, 1325
Bst2UI CCWGG 2 cut(s) 1193, 1308
Bst4CI ACNGT 6 cut(s) 407, 482, 524, 550, 802, 979
Bst6I CTCTTC 6 cut(s) 137, 185, 361, 506, 839, 1147
BstACI GRCGYC 1 cut(s) 573
BstAPI GCANNNNNTGC 1 cut(s) 1232
BstAUI TGTACA 1 cut(s) 1099
BstBI TTCGAA 1 cut(s) 1145
BstC8I GCNNGC 5 cut(s) 325, 604, 695, 960, 1266
BstDEI CTNAG 4 cut(s) 243, 834, 1089, 1283
BstDSI CCRYGG 1 cut(s) 1325
BstF5I GGATG 5 cut(s) 32, 647, 886, 1080, 1360
BstFNI CGCG 1 cut(s) 606
BstHHI GCGC 2 cut(s) 403, 1332
BstKTI GATC 3 cut(s) 186, 1080, 1222
BstMAI GTCTC 1 cut(s) 1144
BstMBI GATC 3 cut(s) 183, 1077, 1219
BstMWI GCNNNNNNNGC 2 cut(s) 398, 1232
BstNI CCWGG 2 cut(s) 1193, 1308
BstPAI GACNNNNGTC 1 cut(s) 1210
BstSCI CCNGG 2 cut(s) 1191, 1306
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 2 cut(s) 202, 292
BstV2I GAAGAC 2 cut(s) 775, 1409
Bsu36I CCTNAGG 1 cut(s) 1089
BsuRI GGCC 1 cut(s) 947
BtgI CCRYGG 1 cut(s) 1325
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 5 cut(s) 32, 647, 886, 1080, 1360
BtsIMutI CAGTG 1 cut(s) 529
BveI ACCTGC 2 cut(s) 329, 1216
Cac8I GCNNGC 5 cut(s) 325, 604, 695, 960, 1266
CciI TCATGA 2 cut(s) 562, 1363
CfoI GCGC 2 cut(s) 403, 1332
Cfr13I GGNCC 2 cut(s) 711, 1205
CseI GACGC 2 cut(s) 1200, 1270
Csp6I GTAC 1 cut(s) 1100
CviAII CATG 6 cut(s) 461, 563, 650, 818, 1326, 1364
CviJI RGCY 9 cut(s) 80, 248, 602, 923, 947, 1073, 1094, 1376, 1446
CviKI_1 RGCY 9 cut(s) 80, 248, 602, 923, 947, 1073, 1094, 1376, 1446
CviQI GTAC 1 cut(s) 1100
DdeI CTNAG 4 cut(s) 243, 834, 1089, 1283
DpnI GATC 3 cut(s) 185, 1079, 1221
DpnII GATC 3 cut(s) 183, 1077, 1219
DraIII CACNNNGTG 1 cut(s) 1232
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 6 cut(s) 137, 185, 361, 506, 839, 1147
EarI CTCTTC 6 cut(s) 137, 185, 361, 506, 839, 1147
EciI GGCGGA 1 cut(s) 911
Eco130I CCWWGG 2 cut(s) 707, 1325
Eco24I GRGCYC 1 cut(s) 1378
Eco32I GATATC 1 cut(s) 758
Eco47I GGWCC 2 cut(s) 711, 1205
Eco81I CCTNAGG 1 cut(s) 1089
Eco88I CYCGRG 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 1191, 1306
EcoRV GATATC 1 cut(s) 758
EcoT14I CCWWGG 2 cut(s) 707, 1325
EcoT38I GRGCYC 1 cut(s) 1378
ErhI CCWWGG 2 cut(s) 707, 1325
FaeI CATG 6 cut(s) 464, 566, 653, 821, 1329, 1367
FatI CATG 6 cut(s) 460, 562, 649, 817, 1325, 1363
FauI CCCGC 3 cut(s) 611, 846, 1231
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 1077
FblI GTMKAC 2 cut(s) 680, 1028
Fnu4HI GCNGC 2 cut(s) 216, 281
FokI GGATG 5 cut(s) 39, 654, 893, 1067, 1367
FriOI GRGCYC 1 cut(s) 1378
Fsp4HI GCNGC 2 cut(s) 216, 281
FspBI CTAG 2 cut(s) 18, 708
GlaI GCGC 2 cut(s) 402, 1331
GluI GCNGC 2 cut(s) 216, 281
GsuI CTGGAG 3 cut(s) 102, 138, 1214
HaeIII GGCC 1 cut(s) 947
HapII CCGG 1 cut(s) 1022
HgaI GACGC 2 cut(s) 1200, 1270
HhaI GCGC 2 cut(s) 403, 1332
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 6 cut(s) 464, 566, 653, 821, 1329, 1367
Hin6I GCGC 2 cut(s) 401, 1330
HinP1I GCGC 2 cut(s) 401, 1330
HincII GTYRAC 1 cut(s) 1042
HindII GTYRAC 1 cut(s) 1042
HinfI GANTC 6 cut(s) 193, 260, 608, 784, 901, 1025
HpaI GTTAAC 1 cut(s) 1042
HpaII CCGG 1 cut(s) 1022
HphI GGTGA 3 cut(s) 167, 353, 632
Hpy166II GTNNAC 4 cut(s) 681, 1029, 1042, 1100
Hpy188I TCNGA 6 cut(s) 198, 265, 613, 1426, 1483, 1495
Hpy8I GTNNAC 4 cut(s) 681, 1029, 1042, 1100
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 7 cut(s) 16, 141, 146, 351, 817, 958, 1431
HpyCH4III ACNGT 6 cut(s) 407, 482, 524, 550, 802, 979
HpyCH4IV ACGT 2 cut(s) 573, 1406
HpyCH4V TGCA 6 cut(s) 205, 327, 338, 554, 1297, 1342
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 1232
HpyF3I CTNAG 4 cut(s) 243, 834, 1089, 1283
HpySE526I ACGT 2 cut(s) 573, 1406
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 6 cut(s) 464, 566, 653, 821, 1329, 1367
HspAI GCGC 2 cut(s) 401, 1330
Kpn2I TCCGGA 1 cut(s) 1021
Ksp22I TGATCA 1 cut(s) 1077
KspAI GTTAAC 1 cut(s) 1042
Kzo9I GATC 3 cut(s) 183, 1077, 1219
LmnI GCTCC 2 cut(s) 119, 1381
Lsp1109I GCAGC 2 cut(s) 202, 292
LweI GCATC 3 cut(s) 434, 680, 1269
MaeI CTAG 2 cut(s) 18, 708
MaeII ACGT 2 cut(s) 573, 1406
MaeIII GTNAC 2 cut(s) 726, 1187
MalI GATC 3 cut(s) 185, 1079, 1221
MboI GATC 3 cut(s) 183, 1077, 1219
MhlI GDGCHC 1 cut(s) 1378
MluCI AATT 7 cut(s) 238, 304, 312, 1301, 1343, 1416, 1468
MlyI GAGTC 2 cut(s) 202, 1034
MroI TCCGGA 1 cut(s) 1021
MseI TTAA 8 cut(s) 62, 108, 164, 294, 578, 804, 1041, 1409
MslI CAYNNNNRTG 1 cut(s) 322
MspI CCGG 1 cut(s) 1022
MspR9I CCNGG 2 cut(s) 1193, 1308
MvaI CCWGG 2 cut(s) 1193, 1308
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 398, 1232
NcoI CCATGG 1 cut(s) 1325
NdeI CATATG 1 cut(s) 319
NdeII GATC 3 cut(s) 183, 1077, 1219
NlaIII CATG 6 cut(s) 464, 566, 653, 821, 1329, 1367
NlaIV GGNNCC 1 cut(s) 1377
NmuCI GTSAC 1 cut(s) 726
NspV TTCGAA 1 cut(s) 1145
PagI TCATGA 2 cut(s) 562, 1363
PaqCI CACCTGC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 674
PfeI GAWTC 4 cut(s) 260, 608, 784, 901
PkrI GCNGC 2 cut(s) 217, 282
PleI GAGTC 2 cut(s) 201, 1033
PpsI GAGTC 2 cut(s) 201, 1033
PshAI GACNNNNGTC 1 cut(s) 1210
Psp6I CCWGG 2 cut(s) 1191, 1306
PspGI CCWGG 2 cut(s) 1191, 1306
PspN4I GGNNCC 1 cut(s) 1377
PspPI GGNCC 2 cut(s) 711, 1205
RsaI GTAC 1 cut(s) 1101
RsaNI GTAC 1 cut(s) 1100
RseI CAYNNNNRTG 1 cut(s) 322
SaqAI TTAA 8 cut(s) 62, 108, 164, 294, 578, 804, 1041, 1409
SatI GCNGC 2 cut(s) 216, 281
Sau3AI GATC 3 cut(s) 183, 1077, 1219
Sau96I GGNCC 2 cut(s) 711, 1205
SchI GAGTC 2 cut(s) 202, 1034
ScrFI CCNGG 2 cut(s) 1193, 1308
SduI GDGCHC 1 cut(s) 1378
SfaNI GCATC 3 cut(s) 434, 680, 1269
SfuI TTCGAA 1 cut(s) 1145
SinI GGWCC 2 cut(s) 711, 1205
SmiMI CAYNNNNRTG 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 1388
SmoI CTYRAG 1 cut(s) 1388
Sse9I AATT 7 cut(s) 238, 304, 312, 1301, 1343, 1416, 1468
SsiI CCGC 5 cut(s) 476, 604, 853, 896, 1224
SspI AATATT 1 cut(s) 1321
SspMI CTAG 2 cut(s) 18, 708
StyD4I CCNGG 2 cut(s) 1191, 1306
StyI CCWWGG 2 cut(s) 707, 1325
TaaI ACNGT 6 cut(s) 407, 482, 524, 550, 802, 979
TaiI ACGT 2 cut(s) 576, 1409
TaqI TCGA 3 cut(s) 186, 1116, 1145
TasI AATT 7 cut(s) 238, 304, 312, 1301, 1343, 1416, 1468
TatI WGTACW 1 cut(s) 1099
TfiI GAWTC 4 cut(s) 260, 608, 784, 901
Tru1I TTAA 8 cut(s) 62, 108, 164, 294, 578, 804, 1041, 1409
Tru9I TTAA 8 cut(s) 62, 108, 164, 294, 578, 804, 1041, 1409
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 726
TseI GCWGC 2 cut(s) 215, 280
Tsp45I GTSAC 1 cut(s) 726
TspDTI ATGAA 7 cut(s) 306, 324, 477, 579, 1005, 1352, 1383
TspGWI ACGGA 1 cut(s) 1191
TspRI CASTG 1 cut(s) 529
VpaK11BI GGWCC 2 cut(s) 711, 1205
XapI RAATTY 4 cut(s) 238, 312, 1301, 1416
XcmI CCANNNNNNNNNTGG 1 cut(s) 1091
XmaJI CCTAGG 1 cut(s) 707
XmiI GTMKAC 2 cut(s) 680, 1028
XspI CTAG 2 cut(s) 18, 708
ZraI GACGTC 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.