Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026900

Physical Location & Seq

Genomic Coordinates Reverse (-)

9881599 .. 9883432

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17785.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGAAGATCACCGTGTTGCGATCAAGACAAAGGCGTGAAGAAAGGACCGTGGCTGCCAGAAGAAGATGATAAGCTCACTGCTTATATAAACGAGAATGGTTATGGGAATTGGCGGTCGCTTCCTAAGCTCGCTGGACTTAACCGCTGTGGCAAGAGCTGTCGGCTCCGGTGGATGAATTATCTCCGGCCTGATATCCGGAGAGGCAAATTTTCCGATGGAGAAGAGAGTACTATCGTTAGACTCCATGCCCTCCTTGGCAACAAATGGTCGAAAATTGCGGGTCATCTTCCAGGAAGAACAGATAATGAAATTAAAAACTATTGGAACACTCATATGAGGAAGAAGTTATTGCAAATGGGGATTGATCCAGTGACGCACGAGCCAAGAACCAACGATCTTAGCCCTATCCTCGATGTTTCTCAAATGCTCGCGGCAGCAATCAACAATGGCCAATTTGGTAACAATAACCTCCTCAACAATAACACCGCTTTGGAAGATATTCTTAAACTCCAATTGATCCATAAAATGCTTCAAATCATAACCCCCAAAGCCATACCAAACATCAGTAGCTTCAAGACCAATTTACTGAATCCTAAACCAGAACCGGTAGTCAATAGCTTCAATACCAATTCAGTGAATCCTAAACCGGATCCCCCGGCTGGTCTTTTCATAAACCAAAGTGGAATCACTCCTGAGGCCGCCTCGGATTTCATTCCATCTTATGAAAATGTTTGGGATGGTTTTGAAGATAACCAGCTTCCTGGTTTGGTTACGGTTTCTCAAGAGAGTTTAAATACAGCAAAACCGGGTACCAGTACGACCACCAAGGTAAATGATCATATCAGAACCGGTATGATGCCGTGTTACTATGGTGATCAACTACTAGAAACCCCATCTACTGGTTCGGTATCGGTCTCTCCCGAGACAACCAGTTTGAACCATCCCAGTACAGCTCAACACTCATCCGGTTCAGATTTCCTAGAGGACTGGGAGAAGTTTCTTGATGATGAAACAAGTGATTCTTGCTGGAAAAGTTTCTTAGACTTAACGTCACCCACATCGTCACCTGTCCCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

360

Amino Acids

40.02

Weight (kDa)

5.79

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.8e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 76	2.5e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 112	1.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 116	1.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026900)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17785 AT4G17785

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	812
AccB1I	GGYRCC	1 cut(s)	812
AccB7I	CCANNNNNTGG	1 cut(s)	902
AccII	CGCG	1 cut(s)	434
AccIII	TCCGGA	1 cut(s)	198
AciI	CCGC	6 cut(s)	115, 145, 281, 434, 489, 702
AclWI	GGATC	4 cut(s)	362, 514, 647, 660
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	4 cut(s)	232, 814, 820, 952
AfiI	CCNNNNNNNGG	2 cut(s)	662, 902
AgeI	ACCGGT	2 cut(s)	607, 851
AgsI	TTSAA	5 cut(s)	536, 577, 625, 749, 940
AhdI	GACNNNNNGTC	1 cut(s)	1051
AjnI	CCWGG	2 cut(s)	292, 763
AluBI	AGCT	7 cut(s)	76, 130, 159, 573, 621, 760, 956
AluI	AGCT	7 cut(s)	76, 130, 159, 573, 621, 760, 956
Alw26I	GTCTC	2 cut(s)	920, 922
AlwI	GGATC	4 cut(s)	362, 514, 647, 660
Ama87I	CYCGRG	1 cut(s)	923
Aor13HI	TCCGGA	1 cut(s)	198
AoxI	GGCC	3 cut(s)	188, 451, 699
ApeKI	GCWGC	2 cut(s)	55, 437
ApoI	RAATTY	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	919, 951
AsiGI	ACCGGT	2 cut(s)	607, 851
Asp700I	GAANNNNTTC	2 cut(s)	501, 1037
Asp718I	GGTACC	1 cut(s)	812
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	2 cut(s)	659, 810
AsuHPI	GGTGA	4 cut(s)	3, 887, 1047, 1059
AvaI	CYCGRG	1 cut(s)	923
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	696
BalI	TGGCCA	1 cut(s)	453
BamHI	GGATCC	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	812
BauI	CACGAG	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	42, 449
BccI	CCATC	5 cut(s)	212, 727, 734, 904, 951
BceAI	ACGGC	1 cut(s)	847
BciT130I	CCWGG	2 cut(s)	294, 765
BclI	TGATCA	2 cut(s)	838, 877
BcnI	CCSGG	2 cut(s)	659, 810
BcoDI	GTCTC	2 cut(s)	920, 922
BfaI	CTAG	2 cut(s)	887, 983
BisI	GCNGC	4 cut(s)	56, 435, 438, 702
BlsI	GCNGC	4 cut(s)	57, 436, 439, 703
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	4 cut(s)	294, 659, 765, 810
Bme18I	GGWCC	1 cut(s)	47
BmeRI	GACNNNNNGTC	1 cut(s)	1051
BmeT110I	CYCGRG	1 cut(s)	923
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	3 cut(s)	167, 654, 814
BmrFI	CCNGG	4 cut(s)	294, 659, 765, 810
BmrI	ACTGGG	2 cut(s)	942, 1000
BmsI	GCATC	1 cut(s)	849
BmuI	ACTGGG	2 cut(s)	942, 1000
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
Bpu10I	CCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	768
BpuMI	CCSGG	2 cut(s)	659, 810
BsaI	GGTCTC	1 cut(s)	922
BsaJI	CCNNGG	6 cut(s)	50, 256, 657, 705, 828, 1076
BsaWI	WCCGGW	6 cut(s)	168, 198, 607, 649, 851, 968
Bsc4I	CCNNNNNNNGG	2 cut(s)	662, 902
Bse118I	RCCGGY	2 cut(s)	607, 851
Bse1I	ACTGG	6 cut(s)	371, 816, 907, 933, 948, 995
Bse21I	CCTNAGG	1 cut(s)	696
BseAI	TCCGGA	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	294, 765
BseDI	CCNNGG	6 cut(s)	50, 256, 657, 705, 828, 1076
BseGI	GGATG	4 cut(s)	180, 745, 943, 965
BseLI	CCNNNNNNNGG	2 cut(s)	662, 902
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	6 cut(s)	371, 816, 907, 933, 948, 995
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	2 cut(s)	42, 449
Bsh1236I	CGCG	1 cut(s)	434
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	190, 453, 701
BshNI	GGYRCC	1 cut(s)	812
BshTI	ACCGGT	2 cut(s)	607, 851
BsiEI	CGRYCG	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	923
BsiSI	CCGG	9 cut(s)	169, 187, 199, 608, 650, 659, 809, 852, 969
BslFI	GGGAC	1 cut(s)	1058
BslI	CCNNNNNNNGG	2 cut(s)	662, 902
BsmAI	GTCTC	2 cut(s)	920, 922
BsmFI	GGGAC	1 cut(s)	1058
BsnI	GGCC	3 cut(s)	190, 453, 701
Bso31I	GGTCTC	1 cut(s)	922
BsoBI	CYCGRG	1 cut(s)	923
Bsp13I	TCCGGA	1 cut(s)	198
Bsp143I	GATC	8 cut(s)	8, 22, 367, 397, 519, 652, 838, 877
Bsp19I	CCATGG	1 cut(s)	1076
BspACI	CCGC	6 cut(s)	115, 145, 281, 434, 489, 702
BspANI	GGCC	3 cut(s)	190, 453, 701
BspCNI	CTCAG	1 cut(s)	688
BspEI	TCCGGA	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	3 cut(s)	167, 654, 814
BspPI	GGATC	4 cut(s)	362, 514, 647, 660
BspT107I	GGYRCC	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	922
BsrFI	RCCGGY	2 cut(s)	607, 851
BsrI	ACTGG	6 cut(s)	371, 816, 907, 933, 948, 995
BssAI	RCCGGY	2 cut(s)	607, 851
BssECI	CCNNGG	6 cut(s)	50, 256, 657, 705, 828, 1076
BssMI	GATC	8 cut(s)	8, 22, 367, 397, 519, 652, 838, 877
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	3 cut(s)	256, 828, 1076
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	2 cut(s)	294, 765
Bst4CI	ACNGT	3 cut(s)	15, 51, 778
Bst6I	CTCTTC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	132, 432
BstDEI	CTNAG	4 cut(s)	126, 401, 696, 1042
BstDSI	CCRYGG	2 cut(s)	50, 1076
BstF5I	GGATG	4 cut(s)	180, 745, 943, 965
BstFNI	CGCG	1 cut(s)	434
BstKTI	GATC	8 cut(s)	11, 25, 370, 400, 522, 655, 841, 880
BstMAI	GTCTC	2 cut(s)	920, 922
BstMBI	GATC	8 cut(s)	8, 22, 367, 397, 519, 652, 838, 877
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	294, 765
BstSCI	CCNGG	4 cut(s)	292, 657, 763, 808
BstUI	CGCG	1 cut(s)	434
BstV1I	GCAGC	2 cut(s)	42, 449
BstX2I	RGATCY	1 cut(s)	652
BstXI	CCANNNNNNTGG	1 cut(s)	764
BstYI	RGATCY	1 cut(s)	652
Bsu36I	CCTNAGG	1 cut(s)	696
BsuRI	GGCC	3 cut(s)	190, 453, 701
BtgI	CCRYGG	2 cut(s)	50, 1076
BtsCI	GGATG	4 cut(s)	180, 745, 943, 965
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	78, 378, 642
Cac8I	GCNNGC	2 cut(s)	132, 432
Cfr10I	RCCGGY	2 cut(s)	607, 851
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	4 cut(s)	231, 813, 819, 951
CspAI	ACCGGT	2 cut(s)	607, 851
CviAII	CATG	2 cut(s)	248, 1077
CviQI	GTAC	4 cut(s)	231, 813, 819, 951
DdeI	CTNAG	4 cut(s)	126, 401, 696, 1042
DpnI	GATC	8 cut(s)	10, 24, 369, 399, 521, 654, 840, 879
DpnII	GATC	8 cut(s)	8, 22, 367, 397, 519, 652, 838, 877
DraI	TTTAAA	1 cut(s)	795
DriI	GACNNNNNGTC	1 cut(s)	1051
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	219
Eam1105I	GACNNNNNGTC	1 cut(s)	1051
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	3 cut(s)	256, 828, 1076
Eco31I	GGTCTC	1 cut(s)	922
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	923
EcoRII	CCWGG	2 cut(s)	292, 763
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	3 cut(s)	256, 828, 1076
ErhI	CCWWGG	3 cut(s)	256, 828, 1076
FaeI	CATG	2 cut(s)	251, 1080
FalI	AAGNNNNNCTT	4 cut(s)	489, 521, 1009, 1041
FaqI	GGGAC	1 cut(s)	1058
FatI	CATG	2 cut(s)	247, 1076
FauI	CCCGC	1 cut(s)	274
FauNDI	CATATG	1 cut(s)	336
FbaI	TGATCA	2 cut(s)	838, 877
Fnu4HI	GCNGC	4 cut(s)	56, 435, 438, 702
FokI	GGATG	4 cut(s)	187, 752, 930, 952
Fsp4HI	GCNGC	4 cut(s)	56, 435, 438, 702
FspBI	CTAG	2 cut(s)	887, 983
GluI	GCNGC	4 cut(s)	56, 435, 438, 702
HaeIII	GGCC	3 cut(s)	190, 453, 701
HapII	CCGG	9 cut(s)	169, 187, 199, 608, 650, 659, 809, 852, 969
HgaI	GACGC	1 cut(s)	385
Hin1II	CATG	2 cut(s)	251, 1080
HinfI	GANTC	5 cut(s)	243, 592, 640, 687, 1022
HpaII	CCGG	9 cut(s)	169, 187, 199, 608, 650, 659, 809, 852, 969
HphI	GGTGA	4 cut(s)	3, 887, 1047, 1059
Hpy188I	TCNGA	4 cut(s)	217, 709, 848, 976
Hpy188III	TCNNGA	7 cut(s)	26, 199, 577, 695, 785, 923, 1004
HpyCH4III	ACNGT	3 cut(s)	15, 51, 778
HpyCH4IV	ACGT	1 cut(s)	1052
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	4 cut(s)	126, 401, 696, 1042
HpySE526I	ACGT	1 cut(s)	1052
Hsp92II	CATG	2 cut(s)	251, 1080
Kpn2I	TCCGGA	1 cut(s)	198
KpnI	GGTACC	1 cut(s)	816
Ksp22I	TGATCA	2 cut(s)	838, 877
Kzo9I	GATC	8 cut(s)	8, 22, 367, 397, 519, 652, 838, 877
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	2 cut(s)	42, 449
LweI	GCATC	1 cut(s)	849
MaeI	CTAG	2 cut(s)	887, 983
MaeII	ACGT	1 cut(s)	1052
MaeIII	GTNAC	6 cut(s)	373, 461, 772, 866, 1053, 1065
MalI	GATC	8 cut(s)	10, 24, 369, 399, 521, 654, 840, 879
MboI	GATC	8 cut(s)	8, 22, 367, 397, 519, 652, 838, 877
MfeI	CAATTG	1 cut(s)	515
MflI	RGATCY	1 cut(s)	652
MlsI	TGGCCA	1 cut(s)	453
MluCI	AATT	9 cut(s)	109, 178, 209, 276, 312, 455, 515, 583, 631
MluNI	TGGCCA	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	237
MnlI	CCTC	9 cut(s)	197, 263, 333, 422, 482, 485, 691, 715, 979
Mox20I	TGGCCA	1 cut(s)	453
MroI	TCCGGA	1 cut(s)	198
MroXI	GAANNNNTTC	2 cut(s)	501, 1037
MscI	TGGCCA	1 cut(s)	453
MseI	TTAA	5 cut(s)	141, 315, 507, 794, 1049
MslI	CAYNNNNRTG	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	9 cut(s)	169, 187, 199, 608, 650, 659, 809, 852, 969
MspR9I	CCNGG	4 cut(s)	294, 659, 765, 810
MunI	CAATTG	1 cut(s)	515
MvaI	CCWGG	2 cut(s)	294, 765
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	127
NciI	CCSGG	2 cut(s)	659, 810
NcoI	CCATGG	1 cut(s)	1076
NdeI	CATATG	1 cut(s)	336
NdeII	GATC	8 cut(s)	8, 22, 367, 397, 519, 652, 838, 877
NlaIII	CATG	2 cut(s)	251, 1080
NlaIV	GGNNCC	3 cut(s)	167, 654, 814
NmuCI	GTSAC	3 cut(s)	373, 1053, 1065
PdmI	GAANNNNTTC	2 cut(s)	501, 1037
PfeI	GAWTC	4 cut(s)	592, 640, 687, 1022
PflMI	CCANNNNNTGG	1 cut(s)	902
PfoI	TCCNGGA	1 cut(s)	292
PinAI	ACCGGT	2 cut(s)	607, 851
PkrI	GCNGC	4 cut(s)	57, 436, 439, 703
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	292, 763
PspGI	CCWGG	2 cut(s)	292, 763
PspN4I	GGNNCC	3 cut(s)	167, 654, 814
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	652
RsaI	GTAC	4 cut(s)	232, 814, 820, 952
RsaNI	GTAC	4 cut(s)	231, 813, 819, 951
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	5 cut(s)	141, 315, 507, 794, 1049
SatI	GCNGC	4 cut(s)	56, 435, 438, 702
Sau3AI	GATC	8 cut(s)	8, 22, 367, 397, 519, 652, 838, 877
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	4 cut(s)	294, 659, 765, 810
SfaNI	GCATC	1 cut(s)	849
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	783
SmoI	CTYRAG	1 cut(s)	783
Sse9I	AATT	9 cut(s)	109, 178, 209, 276, 312, 455, 515, 583, 631
SsiI	CCGC	6 cut(s)	115, 145, 281, 434, 489, 702
SspMI	CTAG	2 cut(s)	887, 983
StyD4I	CCNGG	4 cut(s)	292, 657, 763, 808
StyI	CCWWGG	3 cut(s)	256, 828, 1076
TaaI	ACNGT	3 cut(s)	15, 51, 778
TaiI	ACGT	1 cut(s)	1055
TaqI	TCGA	2 cut(s)	272, 414
TaqII	GACCGA	1 cut(s)	904
TasI	AATT	9 cut(s)	109, 178, 209, 276, 312, 455, 515, 583, 631
TatI	WGTACW	2 cut(s)	230, 950
TauI	GCSGC	2 cut(s)	437, 704
TfiI	GAWTC	4 cut(s)	592, 640, 687, 1022
Tru1I	TTAA	5 cut(s)	141, 315, 507, 794, 1049
Tru9I	TTAA	5 cut(s)	141, 315, 507, 794, 1049
TscAI	CASTG	3 cut(s)	85, 378, 642
TseFI	GTSAC	3 cut(s)	373, 1053, 1065
TseI	GCWGC	2 cut(s)	55, 437
Tsp45I	GTSAC	3 cut(s)	373, 1053, 1065
TspDTI	ATGAA	6 cut(s)	191, 324, 661, 703, 741, 1026
TspRI	CASTG	3 cut(s)	85, 378, 642
Van91I	CCANNNNNTGG	1 cut(s)	902
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmnI	GAANNNNTTC	2 cut(s)	501, 1037
XspI	CTAG	2 cut(s)	887, 983
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.