Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017518

Physical Location & Seq

Genomic Coordinates Reverse (-)

10612993 .. 10614339

Gene Structure 1347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGATGATACATCCATCAAACAAACTCCCAGAACAATGTGTATGAGTAATCTCAAGCTGTTTTCGTTTGGTGGATCTAAAGTCCAAGATTTCAGAGACATGTATCTCACAGATTGTAATCTGTACAAATTCCCGGACAATTTTAGCTGCTTATCCTCGCTGCAGTCTTTATGCTTGAGCCGAAACAGTATCGAGAATCTACCAGGAAGCATCAAGAAACTTCATCATCTCAAATCTCTTTACTTAAAGAATTGCAAAAATCTCATTTCTCTTCCAGTGCTTCCATCAAATCAGTACTTGGATGTTCATGGCTGTATCTCACTCGAAACAGTTTCAAAACCCATGACGCTTCTAGTGATAGCTGAAAAGACCCATTCTACTTTCGTATTCACGGATTGCTACAAGCTAAACCGAGATGCACAAGAAAAAATTGTGGCTCATACTCAGCTCAAGAGTCAAATACTGGCGAATAGATCTTTTCAACTTAATCATAAGGTCCAATCTCTGGAACTAGTTTTGGAACCTTTATCTGCTGTAAGTTTTCCAGGGAATGATTTGCCACTATGGTTCCGCCATCAGAGAATTGGATCTTCAATGGAAACCAACCTGCCTTCACACTGGTGCGACGATAAATTCATTGGTCTTTCTCTCTGCACGGTTGTCTCTTTCAAGGACTATGAAGATAGAACCAGCCGGTTCTCCGTGATATGCAAGTGCAAGTTCAGAAACGAAGACGGTGATTACATCAGCTTTACATGTAATCTTGGGGGATGGAAAGAGCAGTGTGGATCGTCTAGCCATGAAGAATCAAGAAGACTTAGCTCTGATCATGTGTTCATCAGTTATAGCAACTGTTACCATGCCAAGAAAAACGATGATCTCAATAGATGTTGCAACACCACAGCCTCGTTCAAATTTTTTGTTACTGATGGCAGAGCCAAAAGAAAACTAGATTGCTGTGAGGTGGTGAAATGCGGGATGAGCTTGTTATATGCACCAGATGAGAATGATTGTAGGTTGCATGGGTTACACGAGAATAATCTTGAGAAAGAGATATCTGGAAAAGATACAGAACTAAACGAAACCGCCTTGGATAAAGTTGTTGTGTCCAAGAGAGGCCGTTTATGTGTACAAGAAGAAGAGCTACTGAACAGGAAAAGAATAAAGGAAGACGTCTCTTTTGGTAATTACGATTGTTCTGTAACTTCTATTCTTAGTTACATGGAGCCAGCAAAGCCTCATCTCTGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

417

Amino Acids

47.66

Weight (kDa)

7.96

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	32 - 88	1e-05	Leucine-rich repeat region
LRR_8	PF13855	43 - 85	3.1e-06	Leucine rich repeat
LRR_13	PF23286	48 - 113	8e-06	Disease resistance protein RPS4B-like, leucine-rich repeats
C-JID	PF20160	181 - 334	1.3e-15	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12010 AT4G19470 AT4G19510 AT4G19510 AT4G19510 AT4G19510 AT4G19510 AT4G19510 AT4G19510 AT4G19510 AT4G19510 AT4G19510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1176
Acc36I	ACCTGC	1 cut(s)	615
AccB7I	CCANNNNNTGG	1 cut(s)	505
AciI	CCGC	3 cut(s)	571, 975, 1086
AclWI	GGATC	3 cut(s)	82, 595, 796
AcsI	RAATTY	3 cut(s)	128, 632, 914
AcyI	GRCGYC	1 cut(s)	1173
AfaI	GTAC	3 cut(s)	125, 296, 1131
AfiI	CCNNNNNNNGG	1 cut(s)	505
AflIII	ACRYGT	2 cut(s)	99, 755
AgsI	TTSAA	5 cut(s)	336, 482, 594, 670, 913
AhlI	ACTAGT	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	202, 544
AleI	CACNNNNGTG	1 cut(s)	619
AluBI	AGCT	9 cut(s)	58, 147, 362, 406, 448, 750, 822, 984, 1144
AluI	AGCT	9 cut(s)	58, 147, 362, 406, 448, 750, 822, 984, 1144
Alw26I	GTCTC	3 cut(s)	90, 667, 1180
AlwI	GGATC	3 cut(s)	82, 595, 796
AoxI	GGCC	1 cut(s)	1117
ApeKI	GCWGC	2 cut(s)	147, 160
ApoI	RAATTY	3 cut(s)	128, 632, 914
ArsI	GACNNNNNNTTYG	2 cut(s)	1163, 1195
AspS9I	GGNCC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	749, 979
AvaII	GGWCC	1 cut(s)	496
BarI	GAAGNNNNNNTAC	2 cut(s)	1128, 1160
BauI	CACGAG	1 cut(s)	1031
BbsI	GAAGAC	3 cut(s)	738, 820, 1176
BbvI	GCAGC	2 cut(s)	134, 147
BccI	CCATC	5 cut(s)	23, 292, 582, 765, 923
BceAI	ACGGC	1 cut(s)	1104
BciT130I	CCWGG	2 cut(s)	204, 546
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	3 cut(s)	90, 667, 1180
BcuI	ACTAGT	1 cut(s)	511
BfaI	CTAG	4 cut(s)	353, 512, 795, 950
BfmI	CTRYAG	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	615
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	2 cut(s)	148, 161
BlsI	GCNGC	2 cut(s)	149, 162
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	3 cut(s)	134, 204, 546
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	3 cut(s)	522, 569, 1227
BmrFI	CCNGG	3 cut(s)	134, 204, 546
BmsI	GCATC	2 cut(s)	219, 406
BpiI	GAAGAC	3 cut(s)	738, 820, 1176
BpuEI	CTTGAG	4 cut(s)	38, 196, 434, 1064
BpuMI	CCSGG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	1173
BsaJI	CCNNGG	2 cut(s)	545, 1089
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	3 cut(s)	275, 468, 623
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	204, 546
BseDI	CCNNGG	2 cut(s)	545, 1089
BseGI	GGATG	5 cut(s)	10, 11, 307, 776, 984
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	3 cut(s)	275, 468, 623
BseXI	GCAGC	2 cut(s)	134, 147
BsgI	GTGCAG	1 cut(s)	637
BshFI	GGCC	1 cut(s)	1119
BsiSI	CCGG	2 cut(s)	134, 694
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	3 cut(s)	90, 667, 1180
BsmBI	CGTCTC	1 cut(s)	1180
BsnI	GGCC	1 cut(s)	1119
Bsp1407I	TGTACA	2 cut(s)	123, 1129
Bsp143I	GATC	6 cut(s)	74, 473, 587, 788, 826, 877
BspACI	CCGC	3 cut(s)	571, 975, 1086
BspANI	GGCC	1 cut(s)	1119
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	3 cut(s)	522, 569, 1227
BspMAI	CTGCAG	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	615
BspPI	GGATC	3 cut(s)	82, 595, 796
BspQI	GCTCTTC	1 cut(s)	1134
BsrFI	RCCGGY	1 cut(s)	693
BsrGI	TGTACA	2 cut(s)	123, 1129
BsrI	ACTGG	3 cut(s)	275, 468, 623
BssAI	RCCGGY	1 cut(s)	693
BssECI	CCNNGG	2 cut(s)	545, 1089
BssMI	GATC	6 cut(s)	74, 473, 587, 788, 826, 877
BssNI	GRCGYC	1 cut(s)	1173
BssSI	CACGAG	1 cut(s)	1031
BssT1I	CCWWGG	1 cut(s)	1089
Bst2BI	CACGAG	1 cut(s)	1031
Bst2UI	CCWGG	2 cut(s)	204, 546
Bst4CI	ACNGT	5 cut(s)	188, 331, 658, 737, 854
Bst6I	CTCTTC	2 cut(s)	276, 1134
BstACI	GRCGYC	1 cut(s)	1173
BstAUI	TGTACA	2 cut(s)	123, 1129
BstC8I	GCNNGC	1 cut(s)	1230
BstDEI	CTNAG	3 cut(s)	444, 818, 1214
BstF5I	GGATG	5 cut(s)	10, 11, 307, 776, 984
BstKTI	GATC	6 cut(s)	77, 476, 590, 791, 829, 880
BstMAI	GTCTC	3 cut(s)	90, 667, 1180
BstMBI	GATC	6 cut(s)	74, 473, 587, 788, 826, 877
BstMWI	GCNNNNNNNGC	2 cut(s)	981, 1234
BstNI	CCWGG	2 cut(s)	204, 546
BstNSI	RCATGY	2 cut(s)	103, 759
BstSCI	CCNGG	3 cut(s)	132, 202, 544
BstSFI	CTRYAG	1 cut(s)	161
BstV1I	GCAGC	2 cut(s)	134, 147
BstV2I	GAAGAC	3 cut(s)	738, 820, 1176
BstX2I	RGATCY	3 cut(s)	74, 473, 587
BstYI	RGATCY	3 cut(s)	74, 473, 587
BsuRI	GGCC	1 cut(s)	1119
BtsCI	GGATG	5 cut(s)	10, 11, 307, 776, 984
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	3 cut(s)	282, 616, 788
BveI	ACCTGC	1 cut(s)	615
Cac8I	GCNNGC	1 cut(s)	1230
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	1 cut(s)	496
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	3 cut(s)	124, 295, 1130
CviAII	CATG	9 cut(s)	100, 308, 343, 756, 800, 830, 860, 1022, 1222
CviQI	GTAC	3 cut(s)	124, 295, 1130
DdeI	CTNAG	3 cut(s)	444, 818, 1214
DpnI	GATC	6 cut(s)	76, 475, 589, 790, 828, 879
DpnII	GATC	6 cut(s)	74, 473, 587, 788, 826, 877
Eam1104I	CTCTTC	2 cut(s)	276, 1134
EarI	CTCTTC	2 cut(s)	276, 1134
EciI	GGCGGA	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	1089
Eco32I	GATATC	1 cut(s)	1056
Eco47I	GGWCC	1 cut(s)	496
EcoRII	CCWGG	2 cut(s)	202, 544
EcoRV	GATATC	1 cut(s)	1056
EcoT14I	CCWWGG	1 cut(s)	1089
ErhI	CCWWGG	1 cut(s)	1089
Esp3I	CGTCTC	1 cut(s)	1180
FaeI	CATG	9 cut(s)	103, 311, 346, 759, 803, 833, 863, 1025, 1225
FatI	CATG	9 cut(s)	99, 307, 342, 755, 799, 829, 859, 1021, 1221
FauI	CCCGC	1 cut(s)	968
FbaI	TGATCA	1 cut(s)	826
Fnu4HI	GCNGC	2 cut(s)	148, 161
FokI	GGATG	4 cut(s)	17, 314, 783, 991
Fsp4HI	GCNGC	2 cut(s)	148, 161
FspBI	CTAG	4 cut(s)	353, 512, 795, 950
GluI	GCNGC	2 cut(s)	148, 161
HaeIII	GGCC	1 cut(s)	1119
HapII	CCGG	2 cut(s)	134, 694
HgaI	GACGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	1173
Hin1II	CATG	9 cut(s)	103, 311, 346, 759, 803, 833, 863, 1025, 1225
HinfI	GANTC	3 cut(s)	196, 454, 806
HpaII	CCGG	2 cut(s)	134, 694
HphI	GGTGA	2 cut(s)	749, 979
Hpy166II	GTNNAC	1 cut(s)	1130
Hpy188I	TCNGA	4 cut(s)	95, 579, 725, 826
Hpy188III	TCNNGA	8 cut(s)	193, 214, 451, 506, 810, 1043, 1059, 1246
Hpy8I	GTNNAC	1 cut(s)	1130
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	1 cut(s)	621
HpyCH4III	ACNGT	5 cut(s)	188, 331, 658, 737, 854
HpyCH4IV	ACGT	1 cut(s)	1173
HpyCH4V	TGCA	9 cut(s)	163, 255, 419, 654, 711, 717, 894, 995, 1021
HpyF10VI	GCNNNNNNNGC	2 cut(s)	981, 1234
HpyF3I	CTNAG	3 cut(s)	444, 818, 1214
HpySE526I	ACGT	1 cut(s)	1173
Hsp92I	GRCGYC	1 cut(s)	1173
Hsp92II	CATG	9 cut(s)	103, 311, 346, 759, 803, 833, 863, 1025, 1225
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	6 cut(s)	74, 473, 587, 788, 826, 877
LguI	GCTCTTC	1 cut(s)	1134
LmnI	GCTCC	1 cut(s)	1225
Lsp1109I	GCAGC	2 cut(s)	134, 147
LweI	GCATC	2 cut(s)	219, 406
MaeI	CTAG	4 cut(s)	353, 512, 795, 950
MaeII	ACGT	1 cut(s)	1173
MaeIII	GTNAC	5 cut(s)	854, 922, 1026, 1201, 1217
MalI	GATC	6 cut(s)	76, 475, 589, 790, 828, 879
MboI	GATC	6 cut(s)	74, 473, 587, 788, 826, 877
MboII	GAAGA	9 cut(s)	263, 582, 692, 743, 815, 825, 1148, 1151, 1181
MflI	RGATCY	3 cut(s)	74, 473, 587
MluCI	AATT	8 cut(s)	128, 139, 250, 429, 582, 632, 914, 1186
MlyI	GAGTC	1 cut(s)	463
MnlI	CCTC	5 cut(s)	166, 916, 955, 1109, 1248
MseI	TTAA	2 cut(s)	245, 486
MslI	CAYNNNNRTG	1 cut(s)	619
MspI	CCGG	2 cut(s)	134, 694
MspR9I	CCNGG	3 cut(s)	134, 204, 546
MvaI	CCWGG	2 cut(s)	204, 546
MwoI	GCNNNNNNNGC	2 cut(s)	981, 1234
NciI	CCSGG	1 cut(s)	134
NdeII	GATC	6 cut(s)	74, 473, 587, 788, 826, 877
NlaIII	CATG	9 cut(s)	103, 311, 346, 759, 803, 833, 863, 1025, 1225
NlaIV	GGNNCC	3 cut(s)	522, 569, 1227
NspI	RCATGY	2 cut(s)	103, 759
OliI	CACNNNNGTG	1 cut(s)	619
PciI	ACATGT	2 cut(s)	99, 755
PciSI	GCTCTTC	1 cut(s)	1134
PfeI	GAWTC	2 cut(s)	196, 806
PflMI	CCANNNNNTGG	1 cut(s)	505
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	149, 162
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
PscI	ACATGT	2 cut(s)	99, 755
Psp6I	CCWGG	2 cut(s)	202, 544
PspGI	CCWGG	2 cut(s)	202, 544
PspN4I	GGNNCC	3 cut(s)	522, 569, 1227
PspPI	GGNCC	1 cut(s)	496
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	3 cut(s)	74, 473, 587
RsaI	GTAC	3 cut(s)	125, 296, 1131
RsaNI	GTAC	3 cut(s)	124, 295, 1130
RseI	CAYNNNNRTG	1 cut(s)	619
SapI	GCTCTTC	1 cut(s)	1134
SaqAI	TTAA	2 cut(s)	245, 486
SatI	GCNGC	2 cut(s)	148, 161
Sau3AI	GATC	6 cut(s)	74, 473, 587, 788, 826, 877
Sau96I	GGNCC	1 cut(s)	496
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	3 cut(s)	134, 204, 546
SfaNI	GCATC	2 cut(s)	219, 406
SfcI	CTRYAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	619
SmlI	CTYRAG	4 cut(s)	53, 175, 449, 1043
SmoI	CTYRAG	4 cut(s)	53, 175, 449, 1043
SpeI	ACTAGT	1 cut(s)	511
Sse9I	AATT	8 cut(s)	128, 139, 250, 429, 582, 632, 914, 1186
SsiI	CCGC	3 cut(s)	571, 975, 1086
SspMI	CTAG	4 cut(s)	353, 512, 795, 950
StyD4I	CCNGG	3 cut(s)	132, 202, 544
StyI	CCWWGG	1 cut(s)	1089
TaaI	ACNGT	5 cut(s)	188, 331, 658, 737, 854
TaiI	ACGT	1 cut(s)	1176
TaqI	TCGA	2 cut(s)	192, 324
TasI	AATT	8 cut(s)	128, 139, 250, 429, 582, 632, 914, 1186
TatI	WGTACW	3 cut(s)	123, 294, 1129
TfiI	GAWTC	2 cut(s)	196, 806
Tru1I	TTAA	2 cut(s)	245, 486
Tru9I	TTAA	2 cut(s)	245, 486
TscAI	CASTG	3 cut(s)	282, 623, 788
TseI	GCWGC	2 cut(s)	147, 160
TspDTI	ATGAA	6 cut(s)	212, 296, 625, 693, 816, 826
TspGWI	ACGGA	2 cut(s)	407, 691
TspRI	CASTG	3 cut(s)	282, 623, 788
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	3 cut(s)	128, 632, 914
XceI	RCATGY	2 cut(s)	103, 759
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XspI	CTAG	4 cut(s)	353, 512, 795, 950
ZraI	GACGTC	1 cut(s)	1174
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.