AT4G23510

Toll - interleukin 1 - resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0023627
Physical Location & Seq
Reverse (-)
12267516 .. 12270739
3224 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23510.1

Sequence Viewer

Length: 1908 bp
ATGACGAACTCTTCTCAGTCGCGGAAGCCTCAAGTGTTCATCAGTTTCAGGGGTAAAGCTCAAAGGAAAACCTTAGTGAGCTTTATAAAGTCAAAGTTAGAGGAGATCAGCGAAATCAATGTTTTCATGGACGAGTACGAGATTAGAGGGAGGCCAATCACAACACTCTTCGAACGAATCAGAGAGTCAAGTATCGCACTAGTCATCTTCTCAGACAAGTACCCTGAGTCACGCTGGTGCTTAGACGAGCTAGTTGAGATCAAGAAGCAAATGGAGACAGGATCTATTGTTCCCTTTCCAATATTCTACAAAGTGAAAGCTGAGTCCGTCAAGAATCAGACTGGTCACTTCCGTAATGTTCTCCTCAAAACTGAGGAAGACGTTCGCAAAAAGGTTGATAGGAGCAACATCAGGTCAATACTTGAAACAGAGGATATGATTTGGGGATGGAGACAAGCTTTAGTCTCTGTTGGTGGAAGAATGGGGTTTTCTTATAATCATAAATGTGATAACGATTTCGTTAACGATATTGTGGTCCAGATCAAGAAAATGTTAGCCGATTTATCTCCATCTCCAAGAAATGGTCTTAAAATCATAGAGAGGCCTCAGATGCATCCTCAGGAAGAAGTAACGTCATTGTTACAAGCTCTAAACCTTAAGAAATCTGATCTTGAAGATCTTATTCATATCAATGGCGTCGTTTCCCATGGCACTGATCGTCTGGTGTTTCTTGACCTGATCTCTCTTCAGAATCCTATCCTCGCTGATCGATTAATCGAGCTAGTTCAAGCTGGAAGGAATCTCTTGGTGTTGTTAGGTTCTCTAGAATACTACAATAAAGGTTTCACTTTCAAGCGTATCTTTCTTCCCAAGAAATCTCAACAATTGCCTGGTTACACAGTTGTGGCAGAGAGTAATGACAATCTTCGTAACCATGAAGTTAGCTACTCTGATACTGTTTTGACCTGTTTTTCATTCTTATGTAACATACTGAAACGTAGTGAAATGAAAATCGACCCTCTATCTCAAAGAGTATTCATCGGTCTTGGAGAAAAGCATCTCGGAAAATTCCTAGTGAGCTCTCTAAAAGAAGAATTGGAATCGAACCAAATATTAGTGTATGTAGAGGATGAGACGAAGAGCAGGATCAAAGAGTCAGGGGTTGCAGTAGTGTTCTTCTCAAAGAAGTACCCTAATTCTGAAAAGTGTCTTGATGAGCTCGTTGAGATCAAGAAACTTATGGACGCAGGGAAAATCGATCCCTTGCCTGTTTTTTACAGCTTAAAGGATGAACCAGTTAAGAATCTCAAGGGATATTTCCTTAATAGGCTTCTCAAGATAGAGAATGAAGTGCGTAAGAACATCAAGACGAGAGATGATAAGTCTATACTTGATACTGAAGCTAAAATCTGGGGATGGAGAGATGCTCTCTCGTCCATTGCCTCAAGACCGGGTCTGAGCTATGAGCTTAGCACTGATGACGTGTTCGTTAGTGATATTGTGACCAAGGTCAATGAACTATTTGCCTCAAGGGAGAGAAAGAAGACAGAAGCAGCAACAACAGTTGTCAAAACTCTCGATGCTGATGACTTATTCTATTCCCGAACTTCGTTCTTACAAGCTATAGACCGTGACATTACAGATTTTGAAAGCTTCACTGATATCCCAAATGGTCTTGTACTTCTGAGGCTTAAAGGACACACTAATCTAGTGTTCCTCAAACTGAGTTCTCATGAAAATCTGCTGCAGGTTTTATACTTGTTGTCTTTGGATTTTAACAAAAGAGGAGGGGAAGCCGAAAGCATTGTGACTTCTGCTAGTGGTAGCATTGTAGCTGCTTCTTCAATGTTTCAGCCACTCGATAATAGTATTCGGATTGACCTCAATAGACAAAAATATGCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR

Protein Analysis

635

Amino Acids

72.53

Weight (kDa)

8.28

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 194 6.3e-28 TIR domain
TIR_2 PF13676 12 - 104 8.7e-10 TIR domain
TIR PF01582 375 - 515 1.3e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023627)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G23510 AT4G23510 AT4G23510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 86, 495
Acc36I ACCTGC 1 cut(s) 1738
AccB7I CCANNNNNTGG 1 cut(s) 581
AccII CGCG 1 cut(s) 22
AciI CCGC 1 cut(s) 22
AclWI GGATC 3 cut(s) 289, 1154, 1253
AcsI RAATTY 1 cut(s) 1067
AcuI CTGAAG 2 cut(s) 731, 1419
AcyI GRCGYC 1 cut(s) 696
AfaI GTAC 4 cut(s) 137, 221, 1190, 1680
AfiI CCNNNNNNNGG 1 cut(s) 581
AflII CTTAAG 1 cut(s) 656
AflIII ACRYGT 1 cut(s) 1482
AgsI TTSAA 6 cut(s) 425, 674, 788, 853, 1649, 1845
AhlI ACTAGT 1 cut(s) 199
AjiI CACGTC 1 cut(s) 1483
AjnI CCWGG 1 cut(s) 889
AleI CACNNNNGTG 2 cut(s) 235, 902
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
Alw21I GWGCWC 2 cut(s) 1082, 1221
Alw26I GTCTC 4 cut(s) 269, 445, 469, 1127
AlwI GGATC 3 cut(s) 289, 1154, 1253
AoxI GGCC 2 cut(s) 152, 602
ApeKI GCWGC 3 cut(s) 1553, 1744, 1835
ApoI RAATTY 1 cut(s) 1067
AseI ATTAAT 1 cut(s) 773
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 535
AsuC2I CCSGG 1 cut(s) 1452
AsuII TTCGAA 1 cut(s) 171
AvaII GGWCC 1 cut(s) 535
AxyI CCTNAGG 1 cut(s) 618
BanII GRGCYC 2 cut(s) 1082, 1221
BbsI GAAGAC 2 cut(s) 384, 1550
Bbv12I GWGCWC 2 cut(s) 1082, 1221
BbvI GCAGC 3 cut(s) 1565, 1731, 1822
BccI CCATC 3 cut(s) 441, 577, 1410
BciT130I CCWGG 1 cut(s) 891
BcnI CCSGG 1 cut(s) 1452
BcoDI GTCTC 4 cut(s) 269, 445, 469, 1127
BcuI ACTAGT 1 cut(s) 199
BfaI CTAG 7 cut(s) 200, 251, 782, 824, 1073, 1709, 1818
BfmI CTRYAG 2 cut(s) 1623, 1745
BfrI CTTAAG 1 cut(s) 656
BfuAI ACCTGC 1 cut(s) 1738
BglII AGATCT 1 cut(s) 676
BisI GCNGC 3 cut(s) 1554, 1745, 1836
BlpI GCTNAGC 1 cut(s) 1469
BlsI GCNGC 3 cut(s) 1555, 1746, 1837
Bme1390I CCNGG 2 cut(s) 891, 1452
Bme18I GGWCC 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 1483
BmgT120I GGNCC 1 cut(s) 535
BmrFI CCNGG 2 cut(s) 891, 1452
BmsI GCATC 5 cut(s) 600, 622, 1066, 1414, 1570
BoxI GACNNNNGTC 1 cut(s) 1508
BpiI GAAGAC 2 cut(s) 384, 1550
BplI GAGNNNNNCTC 4 cut(s) 1411, 1443, 1413, 1445
Bpu1102I GCTNAGC 1 cut(s) 1469
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 5 cut(s) 15, 1292, 1319, 1429, 1513
BpuMI CCSGG 1 cut(s) 1452
Bsa29I ATCGAT 2 cut(s) 769, 1257
BsaHI GRCGYC 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 706, 1506
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 2 cut(s) 346, 1295
Bse21I CCTNAGG 1 cut(s) 618
Bse3DI GCAATG 1 cut(s) 1437
BseBI CCWGG 1 cut(s) 891
BseCI ATCGAT 2 cut(s) 769, 1257
BseDI CCNNGG 2 cut(s) 706, 1506
BseGI GGATG 5 cut(s) 452, 613, 1135, 1294, 1421
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 1 cut(s) 1437
BseNI ACTGG 2 cut(s) 346, 1295
BseRI GAGGAG 3 cut(s) 116, 353, 1800
BseXI GCAGC 3 cut(s) 1565, 1731, 1822
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 2 cut(s) 154, 604
BshVI ATCGAT 2 cut(s) 769, 1257
BsiHKAI GWGCWC 2 cut(s) 1082, 1221
BsiSI CCGG 1 cut(s) 1451
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 4 cut(s) 269, 445, 469, 1127
BsmBI CGTCTC 1 cut(s) 1127
BsnI GGCC 2 cut(s) 154, 604
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 1082, 1221
Bsp1720I GCTNAGC 1 cut(s) 1469
Bsp19I CCATGG 1 cut(s) 706
BspACI CCGC 1 cut(s) 22
BspANI GGCC 2 cut(s) 154, 604
BspDI ATCGAT 2 cut(s) 769, 1257
BspFNI CGCG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 1732
BspMAI CTGCAG 1 cut(s) 1749
BspMI ACCTGC 1 cut(s) 1738
BspPI GGATC 3 cut(s) 289, 1154, 1253
BspQI GCTCTTC 1 cut(s) 1133
BspT104I TTCGAA 1 cut(s) 171
BspTI CTTAAG 1 cut(s) 656
BsrDI GCAATG 1 cut(s) 1437
BsrI ACTGG 2 cut(s) 346, 1295
BssECI CCNNGG 2 cut(s) 706, 1506
BssNI GRCGYC 1 cut(s) 696
BssT1I CCWWGG 2 cut(s) 706, 1506
Bst2UI CCWGG 1 cut(s) 891
Bst4CI ACNGT 4 cut(s) 901, 958, 1564, 1631
Bst6I CTCTTC 4 cut(s) 16, 173, 750, 1133
BstACI GRCGYC 1 cut(s) 696
BstAFI CTTAAG 1 cut(s) 656
BstBI TTCGAA 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 706
BstF5I GGATG 5 cut(s) 452, 613, 1135, 1294, 1421
BstFNI CGCG 1 cut(s) 22
BstMAI GTCTC 4 cut(s) 269, 445, 469, 1127
BstMWI GCNNNNNNNGC 1 cut(s) 610
BstNI CCWGG 1 cut(s) 891
BstPAI GACNNNNGTC 1 cut(s) 1508
BstSCI CCNGG 2 cut(s) 889, 1450
BstSFI CTRYAG 2 cut(s) 1623, 1745
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 3 cut(s) 1565, 1731, 1822
BstV2I GAAGAC 2 cut(s) 384, 1550
BstX2I RGATCY 2 cut(s) 281, 676
BstYI RGATCY 2 cut(s) 281, 676
Bsu15I ATCGAT 2 cut(s) 769, 1257
Bsu36I CCTNAGG 1 cut(s) 618
BsuRI GGCC 2 cut(s) 154, 604
BsuTUI ATCGAT 2 cut(s) 769, 1257
BtgI CCRYGG 1 cut(s) 706
BtrI CACGTC 1 cut(s) 1483
BtsCI GGATG 5 cut(s) 452, 613, 1135, 1294, 1421
BtsIMutI CAGTG 3 cut(s) 711, 1473, 1656
BveI ACCTGC 1 cut(s) 1738
CciI TCATGA 1 cut(s) 1732
Cfr13I GGNCC 1 cut(s) 535
ClaI ATCGAT 2 cut(s) 769, 1257
CseI GACGC 2 cut(s) 685, 1253
Csp6I GTAC 4 cut(s) 136, 220, 1189, 1679
CviAII CATG 4 cut(s) 127, 707, 935, 1733
CviQI GTAC 4 cut(s) 136, 220, 1189, 1679
Eam1104I CTCTTC 4 cut(s) 16, 173, 750, 1133
EarI CTCTTC 4 cut(s) 16, 173, 750, 1133
Ecl136II GAGCTC 2 cut(s) 1080, 1219
Eco130I CCWWGG 2 cut(s) 706, 1506
Eco147I AGGCCT 1 cut(s) 604
Eco24I GRGCYC 2 cut(s) 1082, 1221
Eco32I GATATC 1 cut(s) 1663
Eco47I GGWCC 1 cut(s) 535
Eco53kI GAGCTC 2 cut(s) 1080, 1219
Eco57I CTGAAG 2 cut(s) 731, 1419
Eco81I CCTNAGG 1 cut(s) 618
EcoICRI GAGCTC 2 cut(s) 1080, 1219
EcoRII CCWGG 1 cut(s) 889
EcoRV GATATC 1 cut(s) 1663
EcoT14I CCWWGG 2 cut(s) 706, 1506
EcoT22I ATGCAT 1 cut(s) 615
EcoT38I GRGCYC 2 cut(s) 1082, 1221
ErhI CCWWGG 2 cut(s) 706, 1506
Esp3I CGTCTC 1 cut(s) 1127
FaeI CATG 4 cut(s) 130, 710, 938, 1736
FalI AAGNNNNNCTT 2 cut(s) 845, 877
FatI CATG 4 cut(s) 126, 706, 934, 1732
Fnu4HI GCNGC 3 cut(s) 1554, 1745, 1836
FokI GGATG 5 cut(s) 459, 600, 1142, 1301, 1428
FriOI GRGCYC 2 cut(s) 1082, 1221
Fsp4HI GCNGC 3 cut(s) 1554, 1745, 1836
FspBI CTAG 7 cut(s) 200, 251, 782, 824, 1073, 1709, 1818
GluI GCNGC 3 cut(s) 1554, 1745, 1836
HaeIII GGCC 2 cut(s) 154, 604
HapII CCGG 1 cut(s) 1451
HgaI GACGC 2 cut(s) 685, 1253
Hin1I GRCGYC 1 cut(s) 696
Hin1II CATG 4 cut(s) 130, 710, 938, 1736
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 2 cut(s) 456, 1651
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 1 cut(s) 1451
Hpy166II GTNNAC 1 cut(s) 523
Hpy8I GTNNAC 1 cut(s) 523
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 1 cut(s) 789
HpyCH4III ACNGT 4 cut(s) 901, 958, 1564, 1631
HpyCH4IV ACGT 4 cut(s) 381, 632, 997, 1482
HpyCH4V TGCA 4 cut(s) 613, 1166, 1747, 1901
HpyF10VI GCNNNNNNNGC 1 cut(s) 610
HpySE526I ACGT 4 cut(s) 381, 632, 997, 1482
Hsp92I GRCGYC 1 cut(s) 696
Hsp92II CATG 4 cut(s) 130, 710, 938, 1736
KspAI GTTAAC 1 cut(s) 523
LguI GCTCTTC 1 cut(s) 1133
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 3 cut(s) 1565, 1731, 1822
LweI GCATC 5 cut(s) 600, 622, 1066, 1414, 1570
MaeI CTAG 7 cut(s) 200, 251, 782, 824, 1073, 1709, 1818
MaeII ACGT 4 cut(s) 381, 632, 997, 1482
MfeI CAATTG 1 cut(s) 884
MflI RGATCY 2 cut(s) 281, 676
MhlI GDGCHC 2 cut(s) 1082, 1221
MluCI AATT 4 cut(s) 884, 1067, 1094, 1195
MlyI GAGTC 4 cut(s) 194, 236, 332, 1163
Mph1103I ATGCAT 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 9 cut(s) 522, 588, 657, 773, 1283, 1299, 1323, 1692, 1776
MslI CAYNNNNRTG 5 cut(s) 235, 504, 690, 902, 979
MspCI CTTAAG 1 cut(s) 656
MspI CCGG 1 cut(s) 1451
MspR9I CCNGG 2 cut(s) 891, 1452
MunI CAATTG 1 cut(s) 884
MvaI CCWGG 1 cut(s) 891
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 610
NciI CCSGG 1 cut(s) 1452
NcoI CCATGG 1 cut(s) 706
NlaIII CATG 4 cut(s) 130, 710, 938, 1736
NmuCI GTSAC 5 cut(s) 228, 344, 1501, 1631, 1807
NsiI ATGCAT 1 cut(s) 615
NspV TTCGAA 1 cut(s) 171
OliI CACNNNNGTG 2 cut(s) 235, 902
PagI TCATGA 1 cut(s) 1732
PceI AGGCCT 1 cut(s) 604
PciSI GCTCTTC 1 cut(s) 1133
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 6 cut(s) 177, 334, 751, 799, 1100, 1303
PflFI GACNNNGTC 1 cut(s) 1452
PflMI CCANNNNNTGG 1 cut(s) 581
PkrI GCNGC 3 cut(s) 1555, 1746, 1837
PleI GAGTC 4 cut(s) 193, 235, 331, 1162
PpsI GAGTC 4 cut(s) 193, 235, 331, 1162
PshAI GACNNNNGTC 1 cut(s) 1508
PshBI ATTAAT 1 cut(s) 773
PsiI TTATAA 2 cut(s) 86, 495
Psp124BI GAGCTC 2 cut(s) 1082, 1221
Psp6I CCWGG 1 cut(s) 889
PspGI CCWGG 1 cut(s) 889
PspPI GGNCC 1 cut(s) 535
PstI CTGCAG 1 cut(s) 1749
PsuI RGATCY 2 cut(s) 281, 676
PsyI GACNNNGTC 1 cut(s) 1452
RsaI GTAC 4 cut(s) 137, 221, 1190, 1680
RsaNI GTAC 4 cut(s) 136, 220, 1189, 1679
RseI CAYNNNNRTG 5 cut(s) 235, 504, 690, 902, 979
SacI GAGCTC 2 cut(s) 1082, 1221
SapI GCTCTTC 1 cut(s) 1133
SaqAI TTAA 9 cut(s) 522, 588, 657, 773, 1283, 1299, 1323, 1692, 1776
SatI GCNGC 3 cut(s) 1554, 1745, 1836
Sau96I GGNCC 1 cut(s) 535
SchI GAGTC 4 cut(s) 194, 236, 332, 1163
ScrFI CCNGG 2 cut(s) 891, 1452
SduI GDGCHC 2 cut(s) 1082, 1221
SfaNI GCATC 5 cut(s) 600, 622, 1066, 1414, 1570
SfcI CTRYAG 2 cut(s) 1623, 1745
SfuI TTCGAA 1 cut(s) 171
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 5 cut(s) 235, 504, 690, 902, 979
SmlI CTYRAG 6 cut(s) 30, 656, 1307, 1334, 1444, 1528
SmoI CTYRAG 6 cut(s) 30, 656, 1307, 1334, 1444, 1528
SpeI ACTAGT 1 cut(s) 199
Sse9I AATT 4 cut(s) 884, 1067, 1094, 1195
SseBI AGGCCT 1 cut(s) 604
SsiI CCGC 1 cut(s) 22
SspI AATATT 2 cut(s) 303, 1113
SspMI CTAG 7 cut(s) 200, 251, 782, 824, 1073, 1709, 1818
SstI GAGCTC 2 cut(s) 1082, 1221
StuI AGGCCT 1 cut(s) 604
StyD4I CCNGG 2 cut(s) 889, 1450
StyI CCWWGG 2 cut(s) 706, 1506
TaaI ACNGT 4 cut(s) 901, 958, 1564, 1631
TaiI ACGT 4 cut(s) 384, 635, 1000, 1485
TaqI TCGA 8 cut(s) 171, 769, 777, 1014, 1103, 1257, 1578, 1860
TaqII GACCGA 1 cut(s) 1031
TasI AATT 4 cut(s) 884, 1067, 1094, 1195
TatI WGTACW 1 cut(s) 1678
TfiI GAWTC 6 cut(s) 177, 334, 751, 799, 1100, 1303
Tru1I TTAA 9 cut(s) 522, 588, 657, 773, 1283, 1299, 1323, 1692, 1776
Tru9I TTAA 9 cut(s) 522, 588, 657, 773, 1283, 1299, 1323, 1692, 1776
TscAI CASTG 3 cut(s) 718, 1480, 1663
TseFI GTSAC 5 cut(s) 228, 344, 1501, 1631, 1807
TseI GCWGC 3 cut(s) 1553, 1744, 1835
Tsp45I GTSAC 5 cut(s) 228, 344, 1501, 1631, 1807
TspGWI ACGGA 2 cut(s) 316, 341
TspRI CASTG 3 cut(s) 718, 1480, 1663
Tth111I GACNNNGTC 1 cut(s) 1452
Van91I CCANNNNNTGG 1 cut(s) 581
Vha464I CTTAAG 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 535
VspI ATTAAT 1 cut(s) 773
XapI RAATTY 1 cut(s) 1067
XbaI TCTAGA 1 cut(s) 823
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 7 cut(s) 200, 251, 782, 824, 1073, 1709, 1818
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.