DNA binding protein binding transcription activator transcription factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1215 |
| Acc36I | ACCTGC | 1 cut(s) | 886 |
| AccII | CGCG | 1 cut(s) | 1170 |
| AciI | CCGC | 7 cut(s) | 288, 483, 491, 600, 695, 785, 1168 |
| AclWI | GGATC | 2 cut(s) | 714, 1158 |
| AcsI | RAATTY | 2 cut(s) | 486, 918 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 62, 390, 1309 |
| AflIII | ACRYGT | 1 cut(s) | 1068 |
| AgeI | ACCGGT | 1 cut(s) | 571 |
| AgsI | TTSAA | 7 cut(s) | 22, 187, 219, 595, 909, 1231, 1259 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 399 |
| AhlI | ACTAGT | 1 cut(s) | 68 |
| AjnI | CCWGG | 4 cut(s) | 891, 997, 1038, 1358 |
| AluBI | AGCT | 9 cut(s) | 27, 181, 314, 433, 641, 956, 1157, 1184, 1285 |
| AluI | AGCT | 9 cut(s) | 27, 181, 314, 433, 641, 956, 1157, 1184, 1285 |
| Alw21I | GWGCWC | 1 cut(s) | 183 |
| Alw26I | GTCTC | 2 cut(s) | 361, 694 |
| AlwI | GGATC | 2 cut(s) | 714, 1158 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 709, 1288 |
| AoxI | GGCC | 1 cut(s) | 812 |
| ApoI | RAATTY | 2 cut(s) | 486, 918 |
| AsiGI | ACCGGT | 1 cut(s) | 571 |
| AspLEI | GCGC | 4 cut(s) | 1037, 1172, 1216, 1302 |
| AspS9I | GGNCC | 1 cut(s) | 1355 |
| AsuHPI | GGTGA | 2 cut(s) | 709, 1005 |
| AvaII | GGWCC | 1 cut(s) | 1355 |
| BanII | GRGCYC | 1 cut(s) | 183 |
| BbsI | GAAGAC | 1 cut(s) | 65 |
| Bbv12I | GWGCWC | 1 cut(s) | 183 |
| BccI | CCATC | 6 cut(s) | 29, 217, 748, 766, 936, 1186 |
| BceAI | ACGGC | 1 cut(s) | 301 |
| BciT130I | CCWGG | 4 cut(s) | 893, 999, 1040, 1360 |
| BcoDI | GTCTC | 2 cut(s) | 361, 694 |
| BcuI | ACTAGT | 1 cut(s) | 68 |
| BfaI | CTAG | 4 cut(s) | 9, 69, 84, 642 |
| BfmI | CTRYAG | 3 cut(s) | 201, 734, 834 |
| BfoI | RGCGCY | 1 cut(s) | 1038 |
| BfuAI | ACCTGC | 1 cut(s) | 886 |
| Bme1390I | CCNGG | 4 cut(s) | 893, 999, 1040, 1360 |
| Bme18I | GGWCC | 1 cut(s) | 1355 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 399 |
| BmgT120I | GGNCC | 1 cut(s) | 1355 |
| BmiI | GGNNCC | 3 cut(s) | 1293, 1356, 1357 |
| BmrFI | CCNGG | 4 cut(s) | 893, 999, 1040, 1360 |
| BmsI | GCATC | 4 cut(s) | 729, 1033, 1055, 1310 |
| BpiI | GAAGAC | 1 cut(s) | 65 |
| BpmI | CTGGAG | 2 cut(s) | 1124, 1310 |
| BpuEI | CTTGAG | 1 cut(s) | 654 |
| BsaJI | CCNNGG | 4 cut(s) | 389, 1038, 1307, 1358 |
| BsaWI | WCCGGW | 1 cut(s) | 571 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 681, 711, 966, 996 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 62, 390, 1309 |
| Bse118I | RCCGGY | 1 cut(s) | 571 |
| Bse1I | ACTGG | 3 cut(s) | 237, 355, 1203 |
| Bse3DI | GCAATG | 2 cut(s) | 262, 1337 |
| BseBI | CCWGG | 4 cut(s) | 893, 999, 1040, 1360 |
| BseDI | CCNNGG | 4 cut(s) | 389, 1038, 1307, 1358 |
| BseGI | GGATG | 6 cut(s) | 181, 451, 928, 1048, 1140, 1325 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 62, 390, 1309 |
| BseMI | GCAATG | 2 cut(s) | 262, 1337 |
| BseMII | CTCAG | 1 cut(s) | 740 |
| BseNI | ACTGG | 3 cut(s) | 237, 355, 1203 |
| BseRI | GAGGAG | 2 cut(s) | 342, 542 |
| BseYI | CCCAGC | 1 cut(s) | 508 |
| BsgI | GTGCAG | 3 cut(s) | 779, 797, 1116 |
| Bsh1236I | CGCG | 1 cut(s) | 1170 |
| BshFI | GGCC | 1 cut(s) | 814 |
| BshTI | ACCGGT | 1 cut(s) | 571 |
| BsiHKAI | GWGCWC | 1 cut(s) | 183 |
| BsiSI | CCGG | 1 cut(s) | 572 |
| BslFI | GGGAC | 5 cut(s) | 79, 490, 649, 1039, 1341 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 62, 390, 1309 |
| BsmAI | GTCTC | 2 cut(s) | 361, 694 |
| BsmFI | GGGAC | 5 cut(s) | 79, 490, 649, 1039, 1341 |
| BsnI | GGCC | 1 cut(s) | 814 |
| Bsp1286I | GDGCHC | 1 cut(s) | 183 |
| Bsp143I | GATC | 3 cut(s) | 706, 1018, 1163 |
| Bsp19I | CCATGG | 1 cut(s) | 1307 |
| BspACI | CCGC | 7 cut(s) | 288, 483, 491, 600, 695, 785, 1168 |
| BspANI | GGCC | 1 cut(s) | 814 |
| BspCNI | CTCAG | 1 cut(s) | 739 |
| BspFNI | CGCG | 1 cut(s) | 1170 |
| BspLI | GGNNCC | 3 cut(s) | 1293, 1356, 1357 |
| BspMAI | CTGCAG | 1 cut(s) | 205 |
| BspMI | ACCTGC | 1 cut(s) | 886 |
| BspPI | GGATC | 2 cut(s) | 714, 1158 |
| BsrDI | GCAATG | 2 cut(s) | 262, 1337 |
| BsrFI | RCCGGY | 1 cut(s) | 571 |
| BsrI | ACTGG | 3 cut(s) | 237, 355, 1203 |
| BssAI | RCCGGY | 1 cut(s) | 571 |
| BssECI | CCNNGG | 4 cut(s) | 389, 1038, 1307, 1358 |
| BssMI | GATC | 3 cut(s) | 706, 1018, 1163 |
| BssT1I | CCWWGG | 1 cut(s) | 1307 |
| Bst2UI | CCWGG | 4 cut(s) | 893, 999, 1040, 1360 |
| Bst4CI | ACNGT | 6 cut(s) | 61, 277, 853, 869, 888, 982 |
| Bst6I | CTCTTC | 1 cut(s) | 1230 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1211, 1336 |
| BstC8I | GCNNGC | 6 cut(s) | 954, 1174, 1178, 1182, 1304, 1337 |
| BstDEI | CTNAG | 1 cut(s) | 726 |
| BstDSI | CCRYGG | 1 cut(s) | 1307 |
| BstF5I | GGATG | 6 cut(s) | 181, 451, 928, 1048, 1140, 1325 |
| BstFNI | CGCG | 1 cut(s) | 1170 |
| BstH2I | RGCGCY | 1 cut(s) | 1038 |
| BstHHI | GCGC | 4 cut(s) | 1037, 1172, 1216, 1302 |
| BstKTI | GATC | 3 cut(s) | 709, 1021, 1166 |
| BstMAI | GTCTC | 2 cut(s) | 361, 694 |
| BstMBI | GATC | 3 cut(s) | 706, 1018, 1163 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 505, 784, 811, 1043, 1211, 1291, 1336 |
| BstNI | CCWGG | 4 cut(s) | 893, 999, 1040, 1360 |
| BstNSI | RCATGY | 1 cut(s) | 1072 |
| BstSCI | CCNGG | 4 cut(s) | 891, 997, 1038, 1358 |
| BstSFI | CTRYAG | 3 cut(s) | 201, 734, 834 |
| BstUI | CGCG | 1 cut(s) | 1170 |
| BstV2I | GAAGAC | 1 cut(s) | 65 |
| BstX2I | RGATCY | 2 cut(s) | 706, 1163 |
| BstYI | RGATCY | 2 cut(s) | 706, 1163 |
| BsuRI | GGCC | 1 cut(s) | 814 |
| BtgI | CCRYGG | 1 cut(s) | 1307 |
| BtsCI | GGATG | 6 cut(s) | 181, 451, 928, 1048, 1140, 1325 |
| BtsIMutI | CAGTG | 4 cut(s) | 273, 348, 849, 893 |
| BveI | ACCTGC | 1 cut(s) | 886 |
| Cac8I | GCNNGC | 6 cut(s) | 954, 1174, 1178, 1182, 1304, 1337 |
| CaiI | CAGNNNCTG | 2 cut(s) | 709, 1288 |
| CfoI | GCGC | 4 cut(s) | 1037, 1172, 1216, 1302 |
| Cfr10I | RCCGGY | 1 cut(s) | 571 |
| Cfr13I | GGNCC | 1 cut(s) | 1355 |
| CseI | GACGC | 1 cut(s) | 811 |
| CspAI | ACCGGT | 1 cut(s) | 571 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 286, 321 |
| CviAII | CATG | 5 cut(s) | 132, 172, 1069, 1264, 1308 |
| DdeI | CTNAG | 1 cut(s) | 726 |
| DpnI | GATC | 3 cut(s) | 708, 1020, 1165 |
| DpnII | GATC | 3 cut(s) | 706, 1018, 1163 |
| DraI | TTTAAA | 1 cut(s) | 967 |
| DriI | GACNNNNNGTC | 1 cut(s) | 399 |
| Eam1104I | CTCTTC | 1 cut(s) | 1230 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 399 |
| EarI | CTCTTC | 1 cut(s) | 1230 |
| EciI | GGCGGA | 1 cut(s) | 615 |
| Ecl136II | GAGCTC | 1 cut(s) | 181 |
| Eco130I | CCWWGG | 1 cut(s) | 1307 |
| Eco147I | AGGCCT | 1 cut(s) | 814 |
| Eco24I | GRGCYC | 1 cut(s) | 183 |
| Eco47I | GGWCC | 1 cut(s) | 1355 |
| Eco53kI | GAGCTC | 1 cut(s) | 181 |
| EcoICRI | GAGCTC | 1 cut(s) | 181 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1355 |
| EcoRI | GAATTC | 2 cut(s) | 486, 918 |
| EcoRII | CCWGG | 4 cut(s) | 891, 997, 1038, 1358 |
| EcoT14I | CCWWGG | 1 cut(s) | 1307 |
| EcoT22I | ATGCAT | 1 cut(s) | 1048 |
| EcoT38I | GRGCYC | 1 cut(s) | 183 |
| ErhI | CCWWGG | 1 cut(s) | 1307 |
| FaeI | CATG | 5 cut(s) | 135, 175, 1072, 1267, 1311 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 363, 395 |
| FaqI | GGGAC | 5 cut(s) | 79, 490, 649, 1039, 1341 |
| FatI | CATG | 5 cut(s) | 131, 171, 1068, 1263, 1307 |
| FauI | CCCGC | 1 cut(s) | 1175 |
| FokI | GGATG | 6 cut(s) | 188, 458, 915, 1055, 1147, 1332 |
| FriOI | GRGCYC | 1 cut(s) | 183 |
| FspBI | CTAG | 4 cut(s) | 9, 69, 84, 642 |
| FspI | TGCGCA | 1 cut(s) | 1215 |
| GlaI | GCGC | 4 cut(s) | 1036, 1171, 1215, 1301 |
| GsaI | CCCAGC | 1 cut(s) | 512 |
| GsuI | CTGGAG | 2 cut(s) | 1124, 1310 |
| HaeII | RGCGCY | 1 cut(s) | 1038 |
| HaeIII | GGCC | 1 cut(s) | 814 |
| HapII | CCGG | 1 cut(s) | 572 |
| HgaI | GACGC | 1 cut(s) | 811 |
| HhaI | GCGC | 4 cut(s) | 1037, 1172, 1216, 1302 |
| Hin1II | CATG | 5 cut(s) | 135, 175, 1072, 1267, 1311 |
| Hin6I | GCGC | 4 cut(s) | 1035, 1170, 1214, 1300 |
| HinP1I | GCGC | 4 cut(s) | 1035, 1170, 1214, 1300 |
| HincII | GTYRAC | 2 cut(s) | 108, 865 |
| HindII | GTYRAC | 2 cut(s) | 108, 865 |
| HindIII | AAGCTT | 1 cut(s) | 1182 |
| HinfI | GANTC | 3 cut(s) | 603, 1024, 1151 |
| HpaI | GTTAAC | 2 cut(s) | 108, 865 |
| HpaII | CCGG | 1 cut(s) | 572 |
| HphI | GGTGA | 2 cut(s) | 709, 1005 |
| Hpy166II | GTNNAC | 3 cut(s) | 108, 377, 865 |
| Hpy188I | TCNGA | 4 cut(s) | 126, 393, 405, 1023 |
| Hpy188III | TCNNGA | 8 cut(s) | 9, 22, 184, 424, 671, 681, 1103, 1289 |
| Hpy8I | GTNNAC | 3 cut(s) | 108, 377, 865 |
| HpyAV | CCTTC | 5 cut(s) | 421, 433, 915, 1116, 1335 |
| HpyCH4III | ACNGT | 6 cut(s) | 61, 277, 853, 869, 888, 982 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 505, 784, 811, 1043, 1211, 1291, 1336 |
| HpyF3I | CTNAG | 1 cut(s) | 726 |
| Hsp92II | CATG | 5 cut(s) | 135, 175, 1072, 1267, 1311 |
| HspAI | GCGC | 4 cut(s) | 1035, 1170, 1214, 1300 |
| KflI | GGGWCCC | 1 cut(s) | 1355 |
| KspAI | GTTAAC | 2 cut(s) | 108, 865 |
| Kzo9I | GATC | 3 cut(s) | 706, 1018, 1163 |
| LmnI | GCTCC | 2 cut(s) | 430, 1291 |
| LweI | GCATC | 4 cut(s) | 729, 1033, 1055, 1310 |
| MaeI | CTAG | 4 cut(s) | 9, 69, 84, 642 |
| MaeIII | GTNAC | 5 cut(s) | 239, 293, 583, 976, 1011 |
| MalI | GATC | 3 cut(s) | 708, 1020, 1165 |
| MboI | GATC | 3 cut(s) | 706, 1018, 1163 |
| MboII | GAAGA | 5 cut(s) | 65, 199, 572, 1247, 1258 |
| MflI | RGATCY | 2 cut(s) | 706, 1163 |
| MhlI | GDGCHC | 1 cut(s) | 183 |
| MluCI | AATT | 5 cut(s) | 144, 486, 918, 1209, 1226 |
| MlyI | GAGTC | 1 cut(s) | 1018 |
| MmeI | TCCRAC | 1 cut(s) | 870 |
| Mph1103I | ATGCAT | 1 cut(s) | 1048 |
| MseI | TTAA | 6 cut(s) | 14, 107, 282, 468, 864, 966 |
| MspA1I | CMGCKG | 1 cut(s) | 1157 |
| MspI | CCGG | 1 cut(s) | 572 |
| MspR9I | CCNGG | 4 cut(s) | 893, 999, 1040, 1360 |
| MvaI | CCWGG | 4 cut(s) | 893, 999, 1040, 1360 |
| MvnI | CGCG | 1 cut(s) | 1170 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 505, 784, 811, 1043, 1211, 1291, 1336 |
| NcoI | CCATGG | 1 cut(s) | 1307 |
| NdeII | GATC | 3 cut(s) | 706, 1018, 1163 |
| NlaIII | CATG | 5 cut(s) | 135, 175, 1072, 1267, 1311 |
| NlaIV | GGNNCC | 3 cut(s) | 1293, 1356, 1357 |
| NmuCI | GTSAC | 1 cut(s) | 1011 |
| NsbI | TGCGCA | 1 cut(s) | 1215 |
| NsiI | ATGCAT | 1 cut(s) | 1048 |
| NspI | RCATGY | 1 cut(s) | 1072 |
| PceI | AGGCCT | 1 cut(s) | 814 |
| PciI | ACATGT | 1 cut(s) | 1068 |
| PfeI | GAWTC | 2 cut(s) | 603, 1151 |
| PfoI | TCCNGGA | 1 cut(s) | 997 |
| PinAI | ACCGGT | 1 cut(s) | 571 |
| PleI | GAGTC | 1 cut(s) | 1018 |
| PpsI | GAGTC | 1 cut(s) | 1018 |
| PpuMI | RGGWCCY | 1 cut(s) | 1355 |
| PscI | ACATGT | 1 cut(s) | 1068 |
| Psp124BI | GAGCTC | 1 cut(s) | 183 |
| Psp5II | RGGWCCY | 1 cut(s) | 1355 |
| Psp6I | CCWGG | 4 cut(s) | 891, 997, 1038, 1358 |
| PspFI | CCCAGC | 1 cut(s) | 508 |
| PspGI | CCWGG | 4 cut(s) | 891, 997, 1038, 1358 |
| PspN4I | GGNNCC | 3 cut(s) | 1293, 1356, 1357 |
| PspPI | GGNCC | 1 cut(s) | 1355 |
| PspPPI | RGGWCCY | 1 cut(s) | 1355 |
| PstI | CTGCAG | 1 cut(s) | 205 |
| PstNI | CAGNNNCTG | 2 cut(s) | 709, 1288 |
| PsuI | RGATCY | 2 cut(s) | 706, 1163 |
| PvuII | CAGCTG | 1 cut(s) | 1157 |
| SacI | GAGCTC | 1 cut(s) | 183 |
| SaqAI | TTAA | 6 cut(s) | 14, 107, 282, 468, 864, 966 |
| Sau3AI | GATC | 3 cut(s) | 706, 1018, 1163 |
| Sau96I | GGNCC | 1 cut(s) | 1355 |
| SchI | GAGTC | 1 cut(s) | 1018 |
| ScrFI | CCNGG | 4 cut(s) | 893, 999, 1040, 1360 |
| SduI | GDGCHC | 1 cut(s) | 183 |
| SfaNI | GCATC | 4 cut(s) | 729, 1033, 1055, 1310 |
| SfcI | CTRYAG | 3 cut(s) | 201, 734, 834 |
| SinI | GGWCC | 1 cut(s) | 1355 |
| SmlI | CTYRAG | 1 cut(s) | 669 |
| SmoI | CTYRAG | 1 cut(s) | 669 |
| SpeI | ACTAGT | 1 cut(s) | 68 |
| Sse9I | AATT | 5 cut(s) | 144, 486, 918, 1209, 1226 |
| SseBI | AGGCCT | 1 cut(s) | 814 |
| SsiI | CCGC | 7 cut(s) | 288, 483, 491, 600, 695, 785, 1168 |
| SspMI | CTAG | 4 cut(s) | 9, 69, 84, 642 |
| SstI | GAGCTC | 1 cut(s) | 183 |
| StuI | AGGCCT | 1 cut(s) | 814 |
| StyD4I | CCNGG | 4 cut(s) | 891, 997, 1038, 1358 |
| StyI | CCWWGG | 1 cut(s) | 1307 |
| TaaI | ACNGT | 6 cut(s) | 61, 277, 853, 869, 888, 982 |
| TaqI | TCGA | 1 cut(s) | 960 |
| TasI | AATT | 5 cut(s) | 144, 486, 918, 1209, 1226 |
| TauI | GCSGC | 1 cut(s) | 787 |
| TfiI | GAWTC | 2 cut(s) | 603, 1151 |
| Tru1I | TTAA | 6 cut(s) | 14, 107, 282, 468, 864, 966 |
| Tru9I | TTAA | 6 cut(s) | 14, 107, 282, 468, 864, 966 |
| TscAI | CASTG | 4 cut(s) | 280, 355, 856, 893 |
| TseFI | GTSAC | 1 cut(s) | 1011 |
| Tsp45I | GTSAC | 1 cut(s) | 1011 |
| TspDTI | ATGAA | 5 cut(s) | 182, 452, 911, 950, 1248 |
| TspRI | CASTG | 4 cut(s) | 280, 355, 856, 893 |
| VpaK11BI | GGWCC | 1 cut(s) | 1355 |
| XapI | RAATTY | 2 cut(s) | 486, 918 |
| XbaI | TCTAGA | 1 cut(s) | 8 |
| XceI | RCATGY | 1 cut(s) | 1072 |
| XspI | CTAG | 4 cut(s) | 9, 69, 84, 642 |
| Zsp2I | ATGCAT | 1 cut(s) | 1048 |