Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027464

Physical Location & Seq

Genomic Coordinates Forward (+)

1602205 .. 1604112

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCAGTTTATGATCAGAGTGGAGATAGAAACAGAACACAAATTGATACATCGAGGAAAAGGAAATCTAGAAGTAGAGGTGACGGTACTACTGTGGCTGAGAGATTAAAGAGATGGAAAGAGTATAACGAGACCGTAGAAGAAGTTTCTACCAAGAAGAGGAAAGTACCTGCGAAAGGGTCGAAGAAGGGTTGTATGAAAGGTAAAGGAGGACCAGAGAATAGCCGATGTAGTTTCAGAGGAGTTAGGCAAAGGATTTGGGGTAAATGGGTTGCTGAGATCAGAGAGCCTAATCGAGGTAGCAGGCTTTGGCTTGGTACTTTCCCTACTGCTCAAGAAGCTGCTTCTGCTTATGATGAGGCTGCTAAAGCTATGTATGGTCCTTTGGCTCGTCTTAATTTCCCTCGGTCTGATGCGTCTGAGGTTACGAGTACCTCAAGTCAGTCTGAGGTGTGTACTGTTGAGACTCCTGGTTGTGTTCATGTGAAAACAGAGGATCCAGATTGTGAATCTAAACCCTTCTCCGGTGGAGTGGAGCCGATGTATTGTCTGGAGAATGGTGCGGAAGAGATGAAGAGAGGTGTTAAAGCGGATAAGCATTGGCTGAGCGAGTTTGAACATAACTATTGGAGTGATATTCTGAAAGAGAAAGAGAAACAGAAGGAGCAAGGGATTGTAGAAACCTGTCAGCAACAACAGCAGGATTCGCTATCTGTTGCAGACTATGGTTGGCCCAATGATGTGGATCAGAGTCACTTGGATTCTTCAGACATGTTTGATGTCGATGAGCTTCTACGTGACCTAAATGGCGACGATGTGTTTGCAGGCTTAAATCAGGACCGGTACCCGGGGAACAGTGTTGCCAACGGTTCATACAGGCCCGAGAGTCAACAAAGTGGTTTTGATCCGCTACAAAGCCTCAACTACGGAATACCTCCGTTTCAGCTCGAGGGAAAGGATGGTAATGGATTCTTCGACGACTTGAGTTACTTGGATCTGGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009636 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010224 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

335

Amino Acids

37.7

Weight (kDa)

5.17

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	78 - 127	1.5e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027464)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05410 AT5G05410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	178
Acc65I	GGTACC	1 cut(s)	843
AccB1I	GGYRCC	1 cut(s)	843
AciI	CCGC	3 cut(s)	563, 590, 908
AclWI	GGATC	5 cut(s)	491, 504, 753, 899, 1002
AcuI	CTGAAG	1 cut(s)	750
AfaI	GTAC	6 cut(s)	88, 168, 319, 433, 457, 845
AfiI	CCNNNNNNNGG	5 cut(s)	159, 176, 296, 524, 847
AflIII	ACRYGT	1 cut(s)	771
AgeI	ACCGGT	1 cut(s)	840
AgsI	TTSAA	1 cut(s)	617
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	4 cut(s)	341, 371, 790, 946
AluI	AGCT	4 cut(s)	341, 371, 790, 946
Alw26I	GTCTC	2 cut(s)	125, 458
AlwI	GGATC	5 cut(s)	491, 504, 753, 899, 1002
Ama87I	CYCGRG	3 cut(s)	847, 881, 947
AoxI	GGCC	2 cut(s)	731, 878
ApeKI	GCWGC	2 cut(s)	341, 362
ArsI	GACNNNNNNTTYG	2 cut(s)	803, 835
AsiGI	ACCGGT	1 cut(s)	840
Asp718I	GGTACC	1 cut(s)	843
AspS9I	GGNCC	5 cut(s)	212, 380, 732, 838, 879
AsuC2I	CCSGG	2 cut(s)	848, 849
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	3 cut(s)	847, 881, 947
AvaII	GGWCC	3 cut(s)	212, 380, 838
BaeI	ACNNNNGTAYC	2 cut(s)	78, 111
BamHI	GGATCC	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	843
BbvI	GCAGC	2 cut(s)	328, 349
BccI	CCATC	2 cut(s)	108, 953
BcgI	CGANNNNNNTGC	2 cut(s)	803, 837
BciT130I	CCWGG	1 cut(s)	471
BclI	TGATCA	1 cut(s)	13
BcnI	CCSGG	2 cut(s)	848, 849
BcoDI	GTCTC	2 cut(s)	125, 458
BfaI	CTAG	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	342, 363
BlpI	GCTNAGC	1 cut(s)	605
BlsI	GCNGC	2 cut(s)	343, 364
Bme1390I	CCNGG	3 cut(s)	471, 848, 849
Bme18I	GGWCC	3 cut(s)	212, 380, 838
BmeT110I	CYCGRG	3 cut(s)	847, 881, 947
BmgT120I	GGNCC	5 cut(s)	212, 380, 732, 838, 879
BmiI	GGNNCC	3 cut(s)	498, 537, 845
BmrFI	CCNGG	3 cut(s)	471, 848, 849
BmsI	GCATC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	572
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	3 cut(s)	318, 421, 1003
BpuMI	CCSGG	2 cut(s)	848, 849
BsaAI	YACGTR	1 cut(s)	797
BsaBI	GATNNNNATC	1 cut(s)	744
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	404, 847, 848
BsaWI	WCCGGW	2 cut(s)	524, 840
BsaXI	ACNNNNNCTCC	2 cut(s)	527, 557
Bsc4I	CCNNNNNNNGG	5 cut(s)	159, 176, 296, 524, 847
Bse118I	RCCGGY	1 cut(s)	840
Bse8I	GATNNNNATC	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	3 cut(s)	404, 847, 848
BseGI	GGATG	1 cut(s)	964
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	5 cut(s)	159, 176, 296, 524, 847
BseMII	CTCAG	5 cut(s)	90, 267, 411, 438, 596
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	328, 349
BshFI	GGCC	2 cut(s)	733, 880
BshNI	GGYRCC	1 cut(s)	843
BshTI	ACCGGT	1 cut(s)	840
BsiHKCI	CYCGRG	3 cut(s)	847, 881, 947
BsiSI	CCGG	3 cut(s)	525, 841, 848
BslI	CCNNNNNNNGG	5 cut(s)	159, 176, 296, 524, 847
BsmAI	GTCTC	2 cut(s)	125, 458
BsnI	GGCC	2 cut(s)	733, 880
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	3 cut(s)	847, 881, 947
Bsp143I	GATC	6 cut(s)	13, 279, 496, 745, 904, 994
Bsp1720I	GCTNAGC	1 cut(s)	605
BspACI	CCGC	3 cut(s)	563, 590, 908
BspANI	GGCC	2 cut(s)	733, 880
BspCNI	CTCAG	5 cut(s)	91, 268, 412, 439, 597
BspLI	GGNNCC	3 cut(s)	498, 537, 845
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	5 cut(s)	491, 504, 753, 899, 1002
BspT107I	GGYRCC	1 cut(s)	843
BspTNI	GGTCTC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	840
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	3 cut(s)	404, 847, 848
BssMI	GATC	6 cut(s)	13, 279, 496, 745, 904, 994
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	6 cut(s)	86, 94, 136, 460, 857, 869
Bst6I	CTCTTC	3 cut(s)	152, 561, 569
BstBAI	YACGTR	1 cut(s)	797
BstC8I	GCNNGC	2 cut(s)	305, 826
BstDEI	CTNAG	5 cut(s)	99, 276, 420, 447, 605
BstENI	CCTNNNNNAGG	2 cut(s)	174, 294
BstF5I	GGATG	1 cut(s)	964
BstKTI	GATC	6 cut(s)	16, 282, 499, 748, 907, 997
BstMAI	GTCTC	2 cut(s)	125, 458
BstMBI	GATC	6 cut(s)	13, 279, 496, 745, 904, 994
BstMWI	GCNNNNNNNGC	5 cut(s)	338, 347, 368, 697, 706
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	3 cut(s)	469, 846, 847
BstV1I	GCAGC	2 cut(s)	328, 349
BstX2I	RGATCY	2 cut(s)	496, 994
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	2 cut(s)	496, 994
BsuRI	GGCC	2 cut(s)	733, 880
BtsCI	GGATG	1 cut(s)	964
BtsIMutI	CAGTG	1 cut(s)	862
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	305, 826
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	5 cut(s)	212, 380, 732, 838, 879
Cfr9I	CCCGGG	1 cut(s)	847
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	6 cut(s)	87, 167, 318, 432, 456, 844
CspAI	ACCGGT	1 cut(s)	840
CviAII	CATG	2 cut(s)	482, 772
CviQI	GTAC	6 cut(s)	87, 167, 318, 432, 456, 844
DdeI	CTNAG	5 cut(s)	99, 276, 420, 447, 605
DpnI	GATC	6 cut(s)	15, 281, 498, 747, 906, 996
DpnII	GATC	6 cut(s)	13, 279, 496, 745, 904, 994
Eam1104I	CTCTTC	3 cut(s)	152, 561, 569
EarI	CTCTTC	3 cut(s)	152, 561, 569
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	3 cut(s)	212, 380, 838
Eco57I	CTGAAG	1 cut(s)	750
Eco88I	CYCGRG	3 cut(s)	847, 881, 947
EcoNI	CCTNNNNNAGG	2 cut(s)	174, 294
EcoRII	CCWGG	1 cut(s)	469
FaeI	CATG	2 cut(s)	485, 775
FatI	CATG	2 cut(s)	481, 771
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	342, 363
FokI	GGATG	1 cut(s)	971
Fsp4HI	GCNGC	2 cut(s)	342, 363
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	2 cut(s)	342, 363
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	2 cut(s)	733, 880
HapII	CCGG	3 cut(s)	525, 841, 848
HgaI	GACGC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	485, 775
HincII	GTYRAC	1 cut(s)	890
HindII	GTYRAC	1 cut(s)	890
HinfI	GANTC	7 cut(s)	466, 509, 704, 751, 761, 886, 969
HpaII	CCGG	3 cut(s)	525, 841, 848
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	456, 890
Hpy188I	TCNGA	9 cut(s)	18, 239, 284, 412, 421, 448, 642, 750, 769
Hpy188III	TCNNGA	6 cut(s)	69, 335, 500, 551, 836, 998
Hpy8I	GTNNAC	2 cut(s)	456, 890
Hpy99I	CGWCG	2 cut(s)	815, 980
HpyAV	CCTTC	3 cut(s)	181, 529, 655
HpyCH4III	ACNGT	6 cut(s)	86, 94, 136, 460, 857, 869
HpyCH4IV	ACGT	1 cut(s)	796
HpyCH4V	TGCA	2 cut(s)	719, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	338, 347, 368, 697, 706
HpyF3I	CTNAG	5 cut(s)	99, 276, 420, 447, 605
HpySE526I	ACGT	1 cut(s)	796
Hsp92II	CATG	2 cut(s)	485, 775
KpnI	GGTACC	1 cut(s)	847
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	6 cut(s)	13, 279, 496, 745, 904, 994
LmnI	GCTCC	2 cut(s)	535, 664
Lsp1109I	GCAGC	2 cut(s)	328, 349
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	796
MaeIII	GTNAC	5 cut(s)	80, 424, 752, 797, 986
MalI	GATC	6 cut(s)	15, 281, 498, 747, 906, 996
MboI	GATC	6 cut(s)	13, 279, 496, 745, 904, 994
MboII	GAAGA	7 cut(s)	152, 169, 196, 578, 586, 756, 964
MflI	RGATCY	2 cut(s)	496, 994
MluCI	AATT	2 cut(s)	42, 397
MlyI	GAGTC	3 cut(s)	460, 760, 895
MseI	TTAA	4 cut(s)	107, 396, 585, 830
MspI	CCGG	3 cut(s)	525, 841, 848
MspR9I	CCNGG	3 cut(s)	471, 848, 849
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	5 cut(s)	338, 347, 368, 697, 706
NciI	CCSGG	2 cut(s)	848, 849
NdeII	GATC	6 cut(s)	13, 279, 496, 745, 904, 994
NlaIII	CATG	2 cut(s)	485, 775
NlaIV	GGNNCC	3 cut(s)	498, 537, 845
NmuCI	GTSAC	3 cut(s)	80, 752, 797
NspI	RCATGY	1 cut(s)	775
PaeR7I	CTCGAG	1 cut(s)	947
PciI	ACATGT	1 cut(s)	771
PfeI	GAWTC	4 cut(s)	509, 704, 761, 969
PinAI	ACCGGT	1 cut(s)	840
PkrI	GCNGC	2 cut(s)	343, 364
PleI	GAGTC	3 cut(s)	460, 759, 894
PpsI	GAGTC	3 cut(s)	460, 759, 894
Ppu21I	YACGTR	1 cut(s)	797
PscI	ACATGT	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	3 cut(s)	498, 537, 845
PspPI	GGNCC	5 cut(s)	212, 380, 732, 838, 879
PspXI	VCTCGAGB	1 cut(s)	947
PsuI	RGATCY	2 cut(s)	496, 994
RsaI	GTAC	6 cut(s)	88, 168, 319, 433, 457, 845
RsaNI	GTAC	6 cut(s)	87, 167, 318, 432, 456, 844
SaqAI	TTAA	4 cut(s)	107, 396, 585, 830
SatI	GCNGC	2 cut(s)	342, 363
Sau3AI	GATC	6 cut(s)	13, 279, 496, 745, 904, 994
Sau96I	GGNCC	5 cut(s)	212, 380, 732, 838, 879
SchI	GAGTC	3 cut(s)	460, 760, 895
ScrFI	CCNGG	3 cut(s)	471, 848, 849
SfaNI	GCATC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	947
SinI	GGWCC	3 cut(s)	212, 380, 838
SlaI	CTCGAG	1 cut(s)	947
SmaI	CCCGGG	1 cut(s)	849
SmlI	CTYRAG	4 cut(s)	333, 436, 947, 982
SmoI	CTYRAG	4 cut(s)	333, 436, 947, 982
Sse9I	AATT	2 cut(s)	42, 397
SsiI	CCGC	3 cut(s)	563, 590, 908
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	469, 846, 847
TaaI	ACNGT	6 cut(s)	86, 94, 136, 460, 857, 869
TaiI	ACGT	1 cut(s)	799
TaqI	TCGA	6 cut(s)	53, 182, 295, 783, 948, 975
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	2 cut(s)	42, 397
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	4 cut(s)	509, 704, 761, 969
Tru1I	TTAA	4 cut(s)	107, 396, 585, 830
Tru9I	TTAA	4 cut(s)	107, 396, 585, 830
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	3 cut(s)	80, 752, 797
TseI	GCWGC	2 cut(s)	341, 362
Tsp45I	GTSAC	3 cut(s)	80, 752, 797
TspDTI	ATGAA	4 cut(s)	212, 470, 587, 861
TspGWI	ACGGA	2 cut(s)	927, 942
TspMI	CCCGGG	1 cut(s)	847
TspRI	CASTG	1 cut(s)	862
VpaK11BI	GGWCC	3 cut(s)	212, 380, 838
XagI	CCTNNNNNAGG	2 cut(s)	174, 294
XbaI	TCTAGA	1 cut(s)	68
XceI	RCATGY	1 cut(s)	775
XhoI	CTCGAG	1 cut(s)	947
XmaI	CCCGGG	1 cut(s)	847
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.