Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020896

Physical Location & Seq

Genomic Coordinates Reverse (-)

2892338 .. 2895480

Gene Structure 3143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G09330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGGGAAAACTCAACTCGCTCCTGGATTTCGTTTCCATCCGACTGATGTTGAACTCGTGAGGTATTACTTGAAGAGGAAAATACTGGGGAAAAAGCTCCTTGTCGATGCTATTGCTGAAGTTGACATTTACAAGTTTGAACCCCCTGATTTACCTGATATGTCTTTTATAAGAAGTGGGGATCTTAAGTGGCACTTCTTCTGCCCCAGGGAAAAGAAGTATGCTAGTGGGGTAAGGGCAAACCGTGCAACTGAGTGTGGCTACTGGAAGACCACGGGGAAGGAGAGACCAGTTCTGTGCAATTCTGAGGTTGTGGGAAAGATCAAAACTCTGGTTTATCACTTTGGCAAGTCGCCTCGTGGGGAGCGGACTGATTGGGTTATGCATGAATACAGGCTTGACGACAAAGTACTGACGCAGATGAATGTTCCTCAGGATACTTATGTGGTGTGTGTTCTGTTCAAGAAAGATGGTCCTGGACCTAGAAATGGAGCTCAATATGGAGCTCCGTTTAAGGAAGAGGACTGGAGTGATGAGGAAGTACGTACTGATGTTCCTTCTACTAGTAATCCCACAAACCTTCTTGAGCCTAGCAAAGAAACCACTCTGGCTTTGACTGCCCCAGATGACTCCAATAAGGATTGTTTTGGTGGCATGATATCAGAGTCATGTGTCTCGGATTTCCTACCAGCTACAACTAATACCACCAGCGAGCTTCCACATCCAAGTGATGCAGCTACCACTCCTATGTCTACTGCACCTCTGGCAGAGACCGTTCAGACCCCCAACAATGATGACTTATATTCAATGTTGGATCTATTTGATGATGACGAAGAGTTCTTAGGGTTCAACAATAATGAGGTAAGATATGATCCCGGTGTCTCAGCTCCAGTTTGCTTAGAAGAAGAAGGCATTTTCAACGGACTACCAGAGTTGAGCAGCATGCCAAGGACGGCCTCTTACGACCTAGTTGAAAACTCGGAGTTATACCTAGAGCTACAAGACCTCACTGCTCCATTAAATCCCCAAACTGGGCTACAAGACCTCACTGCTCCATTTAATCCTCAAACTGGGCTACAAGACCTCACTGCTCCATTTAATCATCAAACTGGGCTACAAGACCACACTGCTCCATTTAATCCTCAAACTGGGCTACAAGACCACACTGCTCCATTTAATCATCAAACTGGGCTACAAGACCTCACTGCTCCATTTAATCCTCAAACTGGGCTACAAGACCTCACTGCTCCATTTAATCCTCAAACTGGGCTACATGACCTCACTTCTCCATTTAATCCTCAAACTGGGCTACAAGACCTCACTGCTCCATTAAATCCTCAAACTGGGAATCGCAATGACCCGAGAAGCTCCTCCTTTCTGTATAATCAAGGCCATTTTGACTTCTCTGGTGGTAATGATGATGATCCTTATGGCTTTTCTGCTTCCATGAGACATAGACCAAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

489

Amino Acids

54.44

Weight (kDa)

4.7

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 133	3.8e-42	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09330 AT5G09330 AT5G09330 AT5G09330 AT5G09330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	752
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	4 cut(s)	189, 822, 866, 1418
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	3 cut(s)	411, 543, 547
AfiI	CCNNNNNNNGG	9 cut(s)	488, 1031, 1032, 1070, 1148, 1226, 1265, 1304, 1343
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	8 cut(s)	53, 73, 140, 463, 807, 850, 919, 974
AhlI	ACTAGT	1 cut(s)	563
AjnI	CCWGG	3 cut(s)	22, 206, 475
AluBI	AGCT	9 cut(s)	97, 494, 506, 692, 715, 737, 887, 997, 1368
AluI	AGCT	9 cut(s)	97, 494, 506, 692, 715, 737, 887, 997, 1368
Alw21I	GWGCWC	2 cut(s)	496, 508
Alw26I	GTCTC	5 cut(s)	280, 679, 764, 886, 1444
AlwI	GGATC	4 cut(s)	189, 822, 866, 1418
Ama87I	CYCGRG	1 cut(s)	1360
AoxI	GGCC	2 cut(s)	954, 1390
ApeKI	GCWGC	2 cut(s)	734, 939
AspS9I	GGNCC	2 cut(s)	473, 479
AsuC2I	CCSGG	1 cut(s)	876
AvaI	CYCGRG	1 cut(s)	1360
AvaII	GGWCC	2 cut(s)	473, 479
AxyI	CCTNAGG	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BanII	GRGCYC	2 cut(s)	496, 508
BauI	CACGAG	2 cut(s)	56, 357
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	496, 508
BbvI	GCAGC	2 cut(s)	746, 951
BccI	CCATC	2 cut(s)	45, 464
BceAI	ACGGC	1 cut(s)	969
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	3 cut(s)	24, 208, 477
BciVI	GTATCC	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	876
BcoDI	GTCTC	5 cut(s)	280, 679, 764, 886, 1444
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	6 cut(s)	225, 483, 564, 591, 968, 992
BfrI	CTTAAG	1 cut(s)	185
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	2 cut(s)	735, 940
BlsI	GCNGC	2 cut(s)	736, 941
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	4 cut(s)	24, 208, 477, 876
Bme18I	GGWCC	2 cut(s)	473, 479
BmeT110I	CYCGRG	1 cut(s)	1360
BmgT120I	GGNCC	2 cut(s)	473, 479
BmrFI	CCNGG	4 cut(s)	24, 208, 477, 876
BmsI	GCATC	2 cut(s)	97, 721
BpiI	GAAGAC	1 cut(s)	275
BpmI	CTGGAG	2 cut(s)	547, 873
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	876
BsaAI	YACGTR	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	1422
BsaI	GGTCTC	2 cut(s)	280, 764
BsaJI	CCNNGG	4 cut(s)	206, 207, 273, 947
Bsc4I	CCNNNNNNNGG	9 cut(s)	488, 1031, 1032, 1070, 1148, 1226, 1265, 1304, 1343
Bse21I	CCTNAGG	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	1360
Bse8I	GATNNNNATC	1 cut(s)	1422
BseBI	CCWGG	3 cut(s)	24, 208, 477
BseDI	CCNNGG	4 cut(s)	206, 207, 273, 947
BseGI	GGATG	2 cut(s)	37, 721
BseJI	GATNNNNATC	1 cut(s)	1422
BseLI	CCNNNNNNNGG	9 cut(s)	488, 1031, 1032, 1070, 1148, 1226, 1265, 1304, 1343
BseMI	GCAATG	1 cut(s)	1360
BseMII	CTCAG	4 cut(s)	243, 297, 446, 897
BseRI	GAGGAG	1 cut(s)	1360
BseXI	GCAGC	2 cut(s)	746, 951
BsgI	GTGCAG	1 cut(s)	741
BshFI	GGCC	2 cut(s)	956, 1392
BsiHKAI	GWGCWC	2 cut(s)	496, 508
BsiHKCI	CYCGRG	1 cut(s)	1360
BsiSI	CCGG	1 cut(s)	876
BslI	CCNNNNNNNGG	9 cut(s)	488, 1031, 1032, 1070, 1148, 1226, 1265, 1304, 1343
BsmAI	GTCTC	5 cut(s)	280, 679, 764, 886, 1444
BsnI	GGCC	2 cut(s)	956, 1392
Bso31I	GGTCTC	2 cut(s)	280, 764
BsoBI	CYCGRG	1 cut(s)	1360
Bsp1286I	GDGCHC	2 cut(s)	496, 508
Bsp143I	GATC	5 cut(s)	181, 321, 814, 871, 1423
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	2 cut(s)	956, 1392
BspCNI	CTCAG	4 cut(s)	244, 298, 445, 896
BspPI	GGATC	4 cut(s)	189, 822, 866, 1418
BspTI	CTTAAG	1 cut(s)	185
BspTNI	GGTCTC	2 cut(s)	280, 764
BsrBI	CCGCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	1360
BssECI	CCNNGG	4 cut(s)	206, 207, 273, 947
BssMI	GATC	5 cut(s)	181, 321, 814, 871, 1423
BssSI	CACGAG	2 cut(s)	56, 357
BssT1I	CCWWGG	1 cut(s)	947
Bst2BI	CACGAG	2 cut(s)	56, 357
Bst2UI	CCWGG	3 cut(s)	24, 208, 477
Bst4CI	ACNGT	2 cut(s)	245, 775
Bst6I	CTCTTC	3 cut(s)	68, 513, 828
BstAFI	CTTAAG	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	713, 944
BstDEI	CTNAG	6 cut(s)	252, 306, 432, 841, 883, 898
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	2 cut(s)	37, 721
BstKTI	GATC	5 cut(s)	184, 324, 817, 874, 1426
BstMAI	GTCTC	5 cut(s)	280, 679, 764, 886, 1444
BstMBI	GATC	5 cut(s)	181, 321, 814, 871, 1423
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 617, 764
BstNI	CCWGG	3 cut(s)	24, 208, 477
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	4 cut(s)	22, 206, 475, 874
BstSNI	TACGTA	1 cut(s)	545
BstV1I	GCAGC	2 cut(s)	746, 951
BstV2I	GAAGAC	1 cut(s)	275
BstX2I	RGATCY	2 cut(s)	181, 814
BstYI	RGATCY	2 cut(s)	181, 814
Bsu36I	CCTNAGG	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	956, 1392
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	37, 721
BtsI	GCAGTG	8 cut(s)	1008, 1047, 1086, 1125, 1164, 1203, 1242, 1320
BtsIMutI	CAGTG	8 cut(s)	1008, 1047, 1086, 1125, 1164, 1203, 1242, 1320
Cac8I	GCNNGC	2 cut(s)	713, 944
Cfr13I	GGNCC	2 cut(s)	473, 479
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	410, 542, 546
CviAII	CATG	6 cut(s)	386, 655, 669, 943, 1274, 1447
CviQI	GTAC	3 cut(s)	410, 542, 546
DdeI	CTNAG	6 cut(s)	252, 306, 432, 841, 883, 898
DpnI	GATC	5 cut(s)	183, 323, 816, 873, 1425
DpnII	GATC	5 cut(s)	181, 321, 814, 871, 1423
Eam1104I	CTCTTC	3 cut(s)	68, 513, 828
EarI	CTCTTC	3 cut(s)	68, 513, 828
Ecl136II	GAGCTC	2 cut(s)	494, 506
Eco105I	TACGTA	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	947
Eco24I	GRGCYC	2 cut(s)	496, 508
Eco31I	GGTCTC	2 cut(s)	280, 764
Eco32I	GATATC	1 cut(s)	660
Eco47I	GGWCC	2 cut(s)	473, 479
Eco53kI	GAGCTC	2 cut(s)	494, 506
Eco57I	CTGAAG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	1360
EcoICRI	GAGCTC	2 cut(s)	494, 506
EcoRII	CCWGG	3 cut(s)	22, 206, 475
EcoRV	GATATC	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	947
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	2 cut(s)	496, 508
ErhI	CCWWGG	1 cut(s)	947
FaeI	CATG	6 cut(s)	389, 658, 672, 946, 1277, 1450
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	6 cut(s)	385, 654, 668, 942, 1273, 1446
FblI	GTMKAC	1 cut(s)	752
Fnu4HI	GCNGC	2 cut(s)	735, 940
FokI	GGATG	2 cut(s)	24, 708
FriOI	GRGCYC	2 cut(s)	496, 508
Fsp4HI	GCNGC	2 cut(s)	735, 940
FspBI	CTAG	6 cut(s)	225, 483, 564, 591, 968, 992
GluI	GCNGC	2 cut(s)	735, 940
GsuI	CTGGAG	2 cut(s)	547, 873
HaeIII	GGCC	2 cut(s)	956, 1392
HapII	CCGG	1 cut(s)	876
HgaI	GACGC	1 cut(s)	424
Hin1II	CATG	6 cut(s)	389, 658, 672, 946, 1277, 1450
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	629, 665, 1348
HpaII	CCGG	1 cut(s)	876
Hpy166II	GTNNAC	2 cut(s)	124, 753
Hpy188I	TCNGA	6 cut(s)	42, 307, 664, 679, 780, 982
Hpy188III	TCNNGA	4 cut(s)	58, 434, 463, 584
Hpy8I	GTNNAC	2 cut(s)	124, 753
HpyAV	CCTTC	4 cut(s)	274, 567, 590, 902
HpyCH4III	ACNGT	2 cut(s)	245, 775
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	5 cut(s)	248, 300, 385, 734, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 617, 764
HpyF3I	CTNAG	6 cut(s)	252, 306, 432, 841, 883, 898
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	6 cut(s)	389, 658, 672, 946, 1277, 1450
Kzo9I	GATC	5 cut(s)	181, 321, 814, 871, 1423
Lsp1109I	GCAGC	2 cut(s)	746, 951
LweI	GCATC	2 cut(s)	97, 721
MaeI	CTAG	6 cut(s)	225, 483, 564, 591, 968, 992
MaeII	ACGT	1 cut(s)	544
MalI	GATC	5 cut(s)	183, 323, 816, 873, 1425
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	5 cut(s)	181, 321, 814, 871, 1423
MboII	GAAGA	7 cut(s)	85, 190, 280, 530, 845, 914, 917
MflI	RGATCY	2 cut(s)	181, 814
MhlI	GDGCHC	2 cut(s)	496, 508
MluCI	AATT	1 cut(s)	301
MlyI	GAGTC	2 cut(s)	623, 674
MmeI	TCCRAC	2 cut(s)	65, 792
Mph1103I	ATGCAT	1 cut(s)	387
MslI	CAYNNNNRTG	2 cut(s)	726, 746
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	1 cut(s)	876
MspR9I	CCNGG	4 cut(s)	24, 208, 477, 876
MvaI	CCWGG	3 cut(s)	24, 208, 477
MwoI	GCNNNNNNNGC	3 cut(s)	245, 617, 764
NciI	CCSGG	1 cut(s)	876
NdeII	GATC	5 cut(s)	181, 321, 814, 871, 1423
NlaIII	CATG	6 cut(s)	389, 658, 672, 946, 1277, 1450
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	1 cut(s)	946
PaeI	GCATGC	1 cut(s)	946
PasI	CCCWGGG	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	1348
PfoI	TCCNGGA	2 cut(s)	22, 475
PkrI	GCNGC	2 cut(s)	736, 941
PleI	GAGTC	2 cut(s)	623, 673
PpsI	GAGTC	2 cut(s)	623, 673
Ppu21I	YACGTR	1 cut(s)	545
PsiI	TTATAA	1 cut(s)	170
Psp124BI	GAGCTC	2 cut(s)	496, 508
Psp6I	CCWGG	3 cut(s)	22, 206, 475
PspGI	CCWGG	3 cut(s)	22, 206, 475
PspPI	GGNCC	2 cut(s)	473, 479
PsuI	RGATCY	2 cut(s)	181, 814
RsaI	GTAC	3 cut(s)	411, 543, 547
RsaNI	GTAC	3 cut(s)	410, 542, 546
RseI	CAYNNNNRTG	2 cut(s)	726, 746
SacI	GAGCTC	2 cut(s)	496, 508
SatI	GCNGC	2 cut(s)	735, 940
Sau3AI	GATC	5 cut(s)	181, 321, 814, 871, 1423
Sau96I	GGNCC	2 cut(s)	473, 479
ScaI	AGTACT	1 cut(s)	411
SchI	GAGTC	2 cut(s)	623, 674
ScrFI	CCNGG	4 cut(s)	24, 208, 477, 876
SduI	GDGCHC	2 cut(s)	496, 508
SfaNI	GCATC	2 cut(s)	97, 721
SinI	GGWCC	2 cut(s)	473, 479
SmiMI	CAYNNNNRTG	2 cut(s)	726, 746
SmlI	CTYRAG	2 cut(s)	185, 584
SmoI	CTYRAG	2 cut(s)	185, 584
SnaBI	TACGTA	1 cut(s)	545
SpeI	ACTAGT	1 cut(s)	563
SphI	GCATGC	1 cut(s)	946
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	367
SspMI	CTAG	6 cut(s)	225, 483, 564, 591, 968, 992
SstI	GAGCTC	2 cut(s)	496, 508
StyD4I	CCNGG	4 cut(s)	22, 206, 475, 874
StyI	CCWWGG	1 cut(s)	947
TaaI	ACNGT	2 cut(s)	245, 775
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	301
TatI	WGTACW	1 cut(s)	409
TfiI	GAWTC	1 cut(s)	1348
TscAI	CASTG	8 cut(s)	1015, 1054, 1093, 1132, 1171, 1210, 1249, 1327
TseI	GCWGC	2 cut(s)	734, 939
TspDTI	ATGAA	2 cut(s)	402, 437
TspGWI	ACGGA	2 cut(s)	498, 936
TspRI	CASTG	8 cut(s)	1015, 1054, 1093, 1132, 1171, 1210, 1249, 1327
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	473, 479
XceI	RCATGY	1 cut(s)	946
XmiI	GTMKAC	1 cut(s)	752
XspI	CTAG	6 cut(s)	225, 483, 564, 591, 968, 992
ZrmI	AGTACT	1 cut(s)	411
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.