Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027270

Physical Location & Seq

Genomic Coordinates Reverse (-)

4627140 .. 4628703

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCTGCTTTCTGTGGGTTCGAGTTATAGGAAACTTGAAGGTTTGGCCATTAATCCTACCTCAAAAGTTCTGTTTCTGTGTGAGCCAAATAGAAGTTTGCTGGGATCATCGGTTGGGGTAGGATGGAACACGGAGCACTTGGAGCTCGGGAAAGAAGTTTCCACGGAAGATTCGAGTTCAGTTTCTGTTGATCATTATGAATCACACGCTGAGAATGGAGAATTAACTCTACAAGTGTATTGTGCTATGATAAGGGGTTTTGGCAAGGACAAGAGACTGAAGAAGCTAAGAAATGGTGGCAGCGCGTTAGAGATGTACGAGGATCTTCTTGACGAAGGACCTGAACCGAACAATTTGTCTTACGAGCCTATGAGACTTCAGCTGCGACCCAAATCTATAAAGCAATGGTTGACAACGGTGAAAAGCCACGGGGCATTGCTCAGTGCTCTTGAGAAAGGGAAGTTATATGATGAGGTGTTACGGGTTTGGAACCATATGGTTAAGGTAGGGATTGAGCCAAATCTTTACGCGTACACGACCATGGCTTCAGTTTTGACAGGACAGCAAAAACTCAATCTTTTGGATACCCTTCTCAAGGAAATGCCTTCAAAAGGTATTATTAAGCCGAGCGTTGTGACTTACAATGCTGTTATAAGCGGTTGCACAAGGAACGGATTAAGTGGTGTGGCTTACGAGTGGTTTCACAGAATGAGAATTGAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

241

Amino Acids

26.95

Weight (kDa)

8.32

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	145 - 183	1.5e-06	PPR repeat family
PPR_3	PF13812	162 - 221	1.4e-09	Pentatricopeptide repeat domain
PPR	PF01535	212 - 238	5.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14350
pyrus_communis	pycom17g01670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
AccII	CGCG	2 cut(s)	305, 530
AciI	CCGC	1 cut(s)	657
AclWI	GGATC	2 cut(s)	112, 330
AcoI	YGGCCR	1 cut(s)	45
AcuI	CTGAAG	3 cut(s)	299, 362, 531
AfaI	GTAC	2 cut(s)	317, 533
AfiI	CCNNNNNNNGG	2 cut(s)	595, 611
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	2 cut(s)	38, 609
AluBI	AGCT	3 cut(s)	145, 286, 382
AluI	AGCT	3 cut(s)	145, 286, 382
Alw21I	GWGCWC	3 cut(s)	138, 147, 448
Alw26I	GTCTC	2 cut(s)	268, 367
AlwI	GGATC	2 cut(s)	112, 330
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	3 cut(s)	4, 300, 382
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	3 cut(s)	138, 147, 448
BbvI	GCAGC	2 cut(s)	312, 369
BccI	CCATC	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	577
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	268, 367
BfuI	GTATCC	1 cut(s)	577
BisI	GCNGC	3 cut(s)	5, 301, 383
BlsI	GCNGC	3 cut(s)	6, 302, 384
Bme18I	GGWCC	1 cut(s)	338
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	491
BpuEI	CTTGAG	2 cut(s)	470, 578
BsaJI	CCNNGG	3 cut(s)	162, 427, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	595, 611
Bse3DI	GCAATG	2 cut(s)	410, 434
BseDI	CCNNGG	3 cut(s)	162, 427, 540
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	2 cut(s)	595, 611
BseMI	GCAATG	2 cut(s)	410, 434
BseMII	CTCAG	2 cut(s)	201, 454
BseXI	GCAGC	2 cut(s)	312, 369
BseYI	CCCAGC	1 cut(s)	100
Bsh1236I	CGCG	2 cut(s)	305, 530
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	3 cut(s)	138, 147, 448
BsiHKCI	CYCGRG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	595, 611
BsmAI	GTCTC	2 cut(s)	268, 367
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	3 cut(s)	138, 147, 448
Bsp143I	GATC	3 cut(s)	104, 190, 322
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	1 cut(s)	657
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	202, 453
BspFNI	CGCG	2 cut(s)	305, 530
BspLI	GGNNCC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	112, 330
BsrDI	GCAATG	2 cut(s)	410, 434
BssECI	CCNNGG	3 cut(s)	162, 427, 540
BssMI	GATC	3 cut(s)	104, 190, 322
BssT1I	CCWWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	418
BstDEI	CTNAG	3 cut(s)	210, 287, 440
BstDSI	CCRYGG	3 cut(s)	162, 427, 540
BstENI	CCTNNNNNAGG	2 cut(s)	593, 609
BstF5I	GGATG	1 cut(s)	128
BstFNI	CGCG	2 cut(s)	305, 530
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	3 cut(s)	107, 193, 325
BstMAI	GTCTC	2 cut(s)	268, 367
BstMBI	GATC	3 cut(s)	104, 190, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstUI	CGCG	2 cut(s)	305, 530
BstV1I	GCAGC	2 cut(s)	312, 369
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	3 cut(s)	162, 427, 540
BtsCI	GGATG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	316, 532
CviAII	CATG	1 cut(s)	541
CviQI	GTAC	2 cut(s)	316, 532
DdeI	CTNAG	3 cut(s)	210, 287, 440
DpnI	GATC	3 cut(s)	106, 192, 324
DpnII	GATC	3 cut(s)	104, 190, 322
EaeI	YGGCCR	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	540
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	3 cut(s)	299, 362, 531
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	2 cut(s)	593, 609
EcoO109I	RGGNCCY	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	1 cut(s)	544
FatI	CATG	1 cut(s)	540
FauNDI	CATATG	1 cut(s)	495
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	5, 301, 383
FokI	GGATG	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	3 cut(s)	5, 301, 383
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	3 cut(s)	5, 301, 383
GsaI	CCCAGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	1 cut(s)	544
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	170, 200
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	411, 534
Hpy188III	TCNNGA	3 cut(s)	148, 329, 449
Hpy8I	GTNNAC	2 cut(s)	411, 534
HpyAV	CCTTC	4 cut(s)	32, 329, 599, 615
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	1 cut(s)	663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	3 cut(s)	210, 287, 440
Hsp92II	CATG	1 cut(s)	544
HspAI	GCGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	104, 190, 322
LmnI	GCTCC	2 cut(s)	133, 142
LpnPI	CCDG	3 cut(s)	86, 354, 543
Lsp1109I	GCAGC	2 cut(s)	312, 369
MaeIII	GTNAC	2 cut(s)	477, 634
MalI	GATC	3 cut(s)	106, 192, 324
MboI	GATC	3 cut(s)	104, 190, 322
MboII	GAAGA	3 cut(s)	179, 292, 317
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	3 cut(s)	138, 147, 448
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	3 cut(s)	221, 352, 714
MluI	ACGCGT	1 cut(s)	528
MluNI	TGGCCA	1 cut(s)	47
MnlI	CCTC	4 cut(s)	70, 313, 466, 714
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	5 cut(s)	51, 224, 501, 621, 677
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	382
MvnI	CGCG	2 cut(s)	305, 530
MwoI	GCNNNNNNNGC	1 cut(s)	142
NcoI	CCATGG	1 cut(s)	540
NdeI	CATATG	1 cut(s)	495
NdeII	GATC	3 cut(s)	104, 190, 322
NlaIII	CATG	1 cut(s)	544
NlaIV	GGNNCC	1 cut(s)	491
NmeAIII	GCCGAG	1 cut(s)	651
NmuCI	GTSAC	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	170, 200
PkrI	GCNGC	3 cut(s)	6, 302, 384
PpuMI	RGGWCCY	1 cut(s)	338
PshBI	ATTAAT	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	653
Psp124BI	GAGCTC	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	338
PspPPI	RGGWCCY	1 cut(s)	338
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	317, 533
RsaNI	GTAC	2 cut(s)	316, 532
RseI	CAYNNNNRTG	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	5 cut(s)	51, 224, 501, 621, 677
SatI	GCNGC	3 cut(s)	5, 301, 383
Sau3AI	GATC	3 cut(s)	104, 190, 322
Sau96I	GGNCC	1 cut(s)	338
SduI	GDGCHC	3 cut(s)	138, 147, 448
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	2 cut(s)	449, 593
SmoI	CTYRAG	2 cut(s)	449, 593
Sse9I	AATT	3 cut(s)	221, 352, 714
SsiI	CCGC	1 cut(s)	657
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	20, 173
TasI	AATT	3 cut(s)	221, 352, 714
TfiI	GAWTC	2 cut(s)	170, 200
Tru1I	TTAA	5 cut(s)	51, 224, 501, 621, 677
Tru9I	TTAA	5 cut(s)	51, 224, 501, 621, 677
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	3 cut(s)	4, 300, 382
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	3 cut(s)	146, 179, 687
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	51
XagI	CCTNNNNNAGG	2 cut(s)	593, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.