Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023583

Physical Location & Seq

Genomic Coordinates Reverse (-)

4859127 .. 4866034

Gene Structure 6908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4104 bp

ATGAAGCGAATTAGGGATGATATTTACGCAACCGGGTCTCAATTTAAACGTCCTTTGGGCTCTTCTCGTGGCGAATCATATGAGCAATCTCCAATCACTGGAGGAGGGAGCATTGGTGAAGGGGGAATCAACACTCAGAAATTGACTACCGATGATGCTTTGACCTACTTAAAGGAAGTAAAGGAGATGTTTCAAGATCAGCGAGACAAATATGATATGTTCCTTGAGGTTATGAAAGACTTTAAGGCACAAAAGACTGATACATCTGGTGTGATTTCACGAGTGAAGGAGCTGTTTAAGGGGCATAACAATTTGATTTTCGGGTTTAACACCTTTTTGCCTAAGGGGTTTGAAATAACGCTTGATGATGTAGAAGCTCCTTCAAAGAAAACTGTTGAATTTGAAGAAGCCATAAGCTTTGTTAATAAAATTAAGACACGGTTCCAGCACAATGAACTTGTCTATAAGTCGTTTCTGGAAATCTTAAATATGTATCGGAAGGATAATAAGGACATCACTGAGGTTTACAATGAGGTGTCTACTCTTTTTGAGGACCACTCGGATTTGCTTGAAGAGTTCACTAGGTTTTTACCAGACTCGTTGGCGCCTCATACAGAAGCCCAGTTACTTCGTAGTCAAGCCCAACGGTATGATGACCGGGGATCAGGCCCTCCTCTTGTGCGTCGAATGTTTATGGAGAAGGATCGCCGACGAGAAAGAACTGTTGCTTCTCGGGGTGATCGTGATCACAGTGTTGACCGTTCTGACCTTAATGATGATAAATCAATGGTTAAGATGCACAGAGATCAGAGGAAACGTGTTGATAAGGATAATAGAGAAAGGAGAAGCCGTGATTTGGAAGATGGAGAAGCAGAGCAAGATAACTTGCAACATTTTTCAGAGAAAAGGAAGTCCTCGAGAAGAATGGAGGGGTTTGAAGCTTATTCTGGTCCTGCTTCACATTCTGAGAAAAACAATCTAAAAAGCATGTACAACCAAGCATTTTTGTTTTGTGAGAAAGTCAAGGAGAGATTATGCAGCCAAGATGATTATCAAGCATTCTTGAAGTGTCTCAATATGTTTAGCAATGGAATTATCCAAAGGAAAGATCTGCAGAATTTGGTTTCCGATGTGCTTGGAAAATTCCCTGATCTCATGGATGAGTTCAATCAGTTCTTTGAGCGTTGTGAGAGTATTGATGGTTTCCAGCACCTTGCTGGTGTTATGAGCAAAAAATCACTTGGTAGTGAAGAAAATTTATCTAGATCAGTGAAGGGGGAGGAAAAAGATAGAGAACACAAACGTGACGTTGAGGCTGCTAAGGAAAAAGAGCGATCCAAGGACAAGTACATGGGGAAATCTATTCAAGAGCTTGATCTATCTGATTGTGAGCGTTGCACTCCTAGCTACCGGCTTCTCCCTCCAGATTATCCAATCCCGTCTGTGCGCCACAGACAGAAATCAGGAGCTGCTGTGTTAAATGATCACTGGGTTTCTGTCACTTCAGGAAGTGAAGACTACTCTTTTAAGCACATGCGCAGGAACCAATATGAAGAAAGCTTGTTTAGATGTGAAGATGATAGATTTGAGTTGGACATGCTGTTGGAATCTGTGGGATCTGCTGCCAAAAGTGCAGAAGAATTGTTGAATATTATCATTGATAAGAAAATAAGTTTTGAGGGCTCCTTCCGGATTGAAGACCATTTCACAGCACTAAATCTAAGGTGTATAGAGAGACTTTATGGAGACCATGGTCTTGACGTGACAGACTTAATACGTAAGAATCCAGCTGCTGCACTTCCTGTAATTCTAACTCGATTGAAGCAGAAACAAGATGAATGGACAAAATGCCGTGAAGGTTTTAATGTGGTCTGGGCGGATGTGTATGCGAAAAACCATTACAAATCACTTGATCACCGCAGCTTCTATTTTAAGCAGCAAGATTCTAAGAATTTGAGTGCAAAAGCGCTGGTGTCTGAAGTCAAGGACTTGAAAGAGAAGTCTCAGAAAGAAGACGATGTTGTTCTGTCTATTTCTGCTGGTTACAGGCAACCGATAATTCCTCACCTCGAGTATGACTATCTCGACAGAGCTATTCATGAAGACCTGTTCAAACTAGTCCAATTTTCTTGTGAGGAGATATGTTCTACAAAAGAGCAGACTGGTAAAGTTCTGAAGCTCTGGGCTAATTTTTTGGAGCTGATGCTTGATGTTGCACCCAGGGCCAAGGGGTCAGATTCTGTTGAAGATGTTGTAGAAACCCAGCATCAGCGTGCATTTACCAGTGGGGAGGCTAATGAGAGTTCTGATGCGATAAGTTTGGTTTCTAGGCAACTAAAATTTGCTACCAATGGAGATGTGCATGCTTCATCTGGGGTCTCCAAGCATGGTGAGACTGGTTTGTTGAATAGGGATTCTTCAGGGAAAGAAAATTTGAAGGATGGTGATCTTGCTAATAAAGATGTTGCCACCTGTGCTGAAAAACCCCAAAAAGATCAAGAAATTGGAAATGGAGCTGCTAAAAGATCTGGAGATGTTGATGAAAGAGTGGCCACTTCAAGTTCGTCTTTCCCAAGTGGGGTCGAAAACAATAATGGTAAAGTAGGAAGCAGAGATTCGTCAGGTTCACGGGGCATATTATCCAAACCAAGTGAAGCTATAGATAAAGTTGATAGCATTCAACATACGCAGGGAGTTGATATAGGCCGAATTATAGTCTTAGGAAATGGTCTGCAGTCAGATACTTCTAAAGCCAACAGTAATTATGATGAATCGGGTGGTCCATCCAAAATTGAGAAGGAGGAAGGTGAATTATCACCTGTTGGTGATTCCGAAGACAACTTTGTTGTTTACGAAGATCGTGAGTTGAAGGCTACTGCGAAAACAGAACATTCAGTTGAAGCTGAAGGAGAAAATGATGAGGACGCTGACGATGAGGATGGTGATGATGCTTCCGAAGCTGGTGAGGATGCTTCGGGAACTGAATCTATTGGTGACGAATGTTCACAGGACGATAATGGCGTTGAGGAAGAGGGTGAGCATGATGAGATTGATGGTAAAGCTGAAAGTGAAGGAGAGGCAGAGGGAATGGAGTCACATCTTATAGAAGACAAAGGGTTGTTTCCGTCATCAGAACGTGTTCTATTATCAGTTAAGCCTCTGTCAAAACATATAGCTGCAGCGGCTTTGGTTGATGAGAAAAAGAAGGATTCCAGAGTATTCTATGGGAATGACGACTTTTATGTCCTTTTCAGGCTTCATCGAGTGAGTGCAATTGATTCTTATGATTTGCTTTCTCACATCCTGTACGAGAGAATTCTGTCTGCGAAAACATATTGCTCCGGCAGTGAAATGAAACTGAGAAACACTAAAGATACTTGTTCACCAGATCCTTATGCAAGGTTTATGAATGCTCTGTTTAGTCTGCTTAATGGCTCAGCTGAAAATTCCAAGTTTGAGGATGAATGCCGAGCTATTATTGGAAACCAGTCATATGTTTTATTCACTTTGGAAAAACTGATATACAAATTGGTTAAACAGCTTCAAGCTGTTGTAGCTGACGACATGGACAATAAGCTTCTTCAGTTGTATGAGTATGAGAATTCCCGGAGACCTGGGAGGGTATTTGACTCGGTATATTATGAAAACGCTAGGATCCTCCTTCATGAAGAAAATATTTATCGGTTAGAATGTTCTTCCTCTCCATCTCGTTTGTCAATCCAGCTTATGGATAACATAATTGAAAAGCCCGACGCTTATGCAGTCTCCATGGAGCCCACATTTACGAGTTATTTGCAAAATGAGTTTCTCTCCAACTCATCAGGGAAGAAAGAGCTACAGGACATTGTGCTACAAAGGAACATGCGTGGATACAATGGTCTGGATGATCTTGCAGTAGCTTGCAAGGCCATGGAAGGTGTACAAGTAATTAATGGCCTTGAATGCAAGATGTCTTGCTCTTCCTACAAGATTTCGTATGTTTTGGACACAGAGGATTTCTTCCACAGGAAGAAGAAACAGAAGAAGAGCAACAACTTGTCACTGGCTAAATTATCACAGAATAGAATAGCAAGATTCCACAAGTTTCTCTCAGCTTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1367

Amino Acids

155.12

Weight (kDa)

5.24

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	69 - 113	1.2e-16	Paired amphipathic helix repeat
PAH	PF02671	154 - 197	4.8e-17	Paired amphipathic helix repeat
PAH	PF02671	350 - 393	2.9e-14	Paired amphipathic helix repeat
Sin3_corepress	PF08295	464 - 552	5.2e-30	Sin3 family co-repressor
Sin3a_C	PF16879	1074 - 1334	6.3e-43	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0023583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15020 AT5G15020
pyrus_communis	pycom16g07270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3242
Acc16I	TGCGCA	1 cut(s)	1538
AccB1I	GGYRCC	1 cut(s)	604
AccB7I	CCANNNNNTGG	2 cut(s)	98, 3727
AccI	GTMKAC	1 cut(s)	539
AccIII	TCCGGA	1 cut(s)	1689
AciI	CCGC	3 cut(s)	1877, 1918, 3182
AclWI	GGATC	7 cut(s)	670, 711, 1329, 1624, 3383, 3649, 3662
AcoI	YGGCCR	1 cut(s)	2550
AcuI	CTGAAG	6 cut(s)	1488, 1998, 2195, 2403, 2925, 3566
AcyI	GRCGYC	1 cut(s)	605
AfaI	GTAC	4 cut(s)	992, 1349, 3308, 3921
AfeI	AGCGCT	1 cut(s)	1968
AfiI	CCNNNNNNNGG	4 cut(s)	98, 856, 2578, 3727
AflIII	ACRYGT	2 cut(s)	817, 3136
AhlI	ACTAGT	1 cut(s)	2116
AjiI	CACGTC	1 cut(s)	1762
AjnI	CCWGG	2 cut(s)	2219, 3613
AleI	CACNNNNGTG	1 cut(s)	1302
AlwI	GGATC	7 cut(s)	670, 711, 1329, 1624, 3383, 3649, 3662
AlwNI	CAGNNNCTG	3 cut(s)	1469, 1793, 2240
Ama87I	CYCGRG	3 cut(s)	732, 916, 2069
Aor13HI	TCCGGA	1 cut(s)	1689
Aor51HI	AGCGCT	1 cut(s)	1968
AoxI	GGCC	6 cut(s)	667, 2223, 2550, 2704, 3906, 3934
AseI	ATTAAT	1 cut(s)	3930
Asp700I	GAANNNNTTC	1 cut(s)	3138
AspLEI	GCGC	4 cut(s)	607, 1449, 1539, 1969
AspS9I	GGNCC	5 cut(s)	553, 668, 950, 2223, 2780
AsuC2I	CCSGG	3 cut(s)	34, 659, 3607
AvaI	CYCGRG	3 cut(s)	732, 916, 2069
AvaII	GGWCC	3 cut(s)	553, 950, 2780
AxyI	CCTNAGG	1 cut(s)	342
BaeI	ACNNNNGTAYC	2 cut(s)	3862, 3895
BalI	TGGCCA	1 cut(s)	2552
BamHI	GGATCC	1 cut(s)	3654
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	3 cut(s)	62, 1685, 3777
BarI	GAAGNNNNNNTAC	2 cut(s)	609, 641
BauI	CACGAG	2 cut(s)	66, 279
BbsI	GAAGAC	6 cut(s)	1521, 1704, 2019, 2109, 2841, 3114
BccI	CCATC	7 cut(s)	857, 1193, 2435, 2791, 2933, 3047, 3712
BceAI	ACGGC	2 cut(s)	834, 1836
BcgI	CGANNNNNNTGC	4 cut(s)	3740, 3774, 3775, 3809
BciT130I	CCWGG	2 cut(s)	2221, 3615
BciVI	GTATCC	1 cut(s)	3863
BclI	TGATCA	3 cut(s)	745, 1483, 1912
BcnI	CCSGG	3 cut(s)	34, 659, 3607
BcuI	ACTAGT	1 cut(s)	2116
BfaI	CTAG	6 cut(s)	582, 1263, 1404, 2117, 2328, 3651
BfmI	CTRYAG	5 cut(s)	1112, 2658, 2732, 3177, 3836
BfoI	RGCGCY	2 cut(s)	608, 1970
BfuI	GTATCC	1 cut(s)	3863
BglII	AGATCT	2 cut(s)	1108, 2525
BlpI	GCTNAGC	1 cut(s)	3436
Bme1390I	CCNGG	5 cut(s)	34, 659, 2221, 3607, 3615
Bme18I	GGWCC	3 cut(s)	553, 950, 2780
BmeT110I	CYCGRG	3 cut(s)	732, 916, 2069
BmgBI	CACGTC	1 cut(s)	1762
BmgT120I	GGNCC	5 cut(s)	553, 668, 950, 2223, 2780
BmiI	GGNNCC	6 cut(s)	443, 606, 1544, 1684, 3656, 3774
BmrFI	CCNGG	5 cut(s)	34, 659, 2221, 3607, 3615
BmrI	ACTGGG	2 cut(s)	616, 1498
BmsI	GCATC	7 cut(s)	145, 786, 2193, 2275, 2299, 2938, 2959
BmuI	ACTGGG	2 cut(s)	616, 1498
BoxI	GACNNNNGTC	1 cut(s)	1752
BpiI	GAAGAC	6 cut(s)	1521, 1704, 2019, 2109, 2841, 3114
BplI	GAGNNNNNCTC	4 cut(s)	542, 574, 3794, 3826
BpmI	CTGGAG	3 cut(s)	120, 1407, 2550
Bpu10I	CCTNAGC	1 cut(s)	1320
Bpu1102I	GCTNAGC	1 cut(s)	3436
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	3 cut(s)	34, 659, 3607
BsaAI	YACGTR	1 cut(s)	1778
BsaBI	GATNNNNATC	3 cut(s)	744, 1050, 2445
BsaHI	GRCGYC	1 cut(s)	605
BsaI	GGTCTC	4 cut(s)	42, 1740, 2383, 3604
BsaJI	CCNNGG	9 cut(s)	658, 1338, 1750, 2219, 2220, 2226, 3614, 3768, 3909
BsaWI	WCCGGW	1 cut(s)	1689
BsaXI	ACNNNNNCTCC	6 cut(s)	100, 130, 835, 865, 1458, 1488
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 856, 2578, 3727
Bse118I	RCCGGY	1 cut(s)	1410
Bse1I	ACTGG	8 cut(s)	103, 622, 1493, 2167, 2283, 2401, 3487, 4047
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	1093
Bse8I	GATNNNNATC	3 cut(s)	744, 1050, 2445
BseAI	TCCGGA	1 cut(s)	1689
BseBI	CCWGG	2 cut(s)	2221, 3615
BseDI	CCNNGG	9 cut(s)	658, 1338, 1750, 2219, 2220, 2226, 3614, 3768, 3909
BseJI	GATNNNNATC	3 cut(s)	744, 1050, 2445
BseLI	CCNNNNNNNGG	4 cut(s)	98, 856, 2578, 3727
BseMI	GCAATG	1 cut(s)	1093
BseMII	CTCAG	7 cut(s)	149, 510, 957, 2018, 3350, 3450, 4104
BseNI	ACTGG	8 cut(s)	103, 622, 1493, 2167, 2283, 2401, 3487, 4047
BseRI	GAGGAG	3 cut(s)	117, 663, 2150
BseYI	CCCAGC	1 cut(s)	2262
BsgI	GTGCAG	2 cut(s)	1653, 1779
BshFI	GGCC	6 cut(s)	669, 2225, 2552, 2706, 3908, 3936
BshNI	GGYRCC	1 cut(s)	604
BsiHKCI	CYCGRG	3 cut(s)	732, 916, 2069
BsiSI	CCGG	6 cut(s)	33, 658, 1411, 1690, 3342, 3607
BslI	CCNNNNNNNGG	4 cut(s)	98, 856, 2578, 3727
BsmI	GAATGC	5 cut(s)	1058, 2676, 3415, 3470, 3947
BsnI	GGCC	6 cut(s)	669, 2225, 2552, 2706, 3908, 3936
Bso31I	GGTCTC	4 cut(s)	42, 1740, 2383, 3604
BsoBI	CYCGRG	3 cut(s)	732, 916, 2069
Bsp1286I	GDGCHC	3 cut(s)	62, 1685, 3777
Bsp13I	TCCGGA	1 cut(s)	1689
Bsp1407I	TGTACA	2 cut(s)	990, 3919
Bsp1720I	GCTNAGC	1 cut(s)	3436
Bsp19I	CCATGG	3 cut(s)	1750, 3768, 3909
BspACI	CCGC	3 cut(s)	1877, 1918, 3182
BspANI	GGCC	6 cut(s)	669, 2225, 2552, 2706, 3908, 3936
BspCNI	CTCAG	7 cut(s)	148, 511, 958, 2017, 3351, 3449, 4103
BspEI	TCCGGA	1 cut(s)	1689
BspHI	TCATGA	2 cut(s)	2098, 3664
BspLI	GGNNCC	6 cut(s)	443, 606, 1544, 1684, 3656, 3774
BspMAI	CTGCAG	3 cut(s)	1116, 2736, 3181
BspPI	GGATC	7 cut(s)	670, 711, 1329, 1624, 3383, 3649, 3662
BspQI	GCTCTTC	3 cut(s)	67, 3964, 4019
BspT107I	GGYRCC	1 cut(s)	604
BspTNI	GGTCTC	4 cut(s)	42, 1740, 2383, 3604
BsrDI	GCAATG	1 cut(s)	1093
BsrFI	RCCGGY	1 cut(s)	1410
BsrGI	TGTACA	2 cut(s)	990, 3919
BsrI	ACTGG	8 cut(s)	103, 622, 1493, 2167, 2283, 2401, 3487, 4047
BssAI	RCCGGY	1 cut(s)	1410
BssECI	CCNNGG	9 cut(s)	658, 1338, 1750, 2219, 2220, 2226, 3614, 3768, 3909
BssNI	GRCGYC	1 cut(s)	605
BssSI	CACGAG	2 cut(s)	66, 279
BssT1I	CCWWGG	5 cut(s)	1338, 1750, 2226, 3768, 3909
Bst2BI	CACGAG	2 cut(s)	66, 279
Bst2UI	CCWGG	2 cut(s)	2221, 3615
Bst4CI	ACNGT	7 cut(s)	394, 441, 648, 724, 752, 761, 2759
Bst6I	CTCTTC	5 cut(s)	67, 567, 3024, 3964, 4019
BstACI	GRCGYC	1 cut(s)	605
BstAUI	TGTACA	2 cut(s)	990, 3919
BstBAI	YACGTR	1 cut(s)	1778
BstC8I	GCNNGC	3 cut(s)	2274, 2364, 3901
BstDSI	CCRYGG	3 cut(s)	1750, 3768, 3909
BstH2I	RGCGCY	2 cut(s)	608, 1970
BstHHI	GCGC	4 cut(s)	607, 1449, 1539, 1969
BstMWI	GCNNNNNNNGC	9 cut(s)	1404, 1631, 2222, 2474, 2957, 3182, 3554, 3905, 3942
BstNI	CCWGG	2 cut(s)	2221, 3615
BstNSI	RCATGY	5 cut(s)	991, 1537, 1600, 2366, 3865
BstPAI	GACNNNNGTC	1 cut(s)	1752
BstSCI	CCNGG	5 cut(s)	32, 657, 2219, 3605, 3613
BstSFI	CTRYAG	5 cut(s)	1112, 2658, 2732, 3177, 3836
BstSNI	TACGTA	1 cut(s)	1778
BstV2I	GAAGAC	6 cut(s)	1521, 1704, 2019, 2109, 2841, 3114
BstX2I	RGATCY	5 cut(s)	1108, 1616, 2525, 3388, 3654
BstYI	RGATCY	5 cut(s)	1108, 1616, 2525, 3388, 3654
Bsu36I	CCTNAGG	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	3863
BsuRI	GGCC	6 cut(s)	669, 2225, 2552, 2706, 3908, 3936
BtgI	CCRYGG	3 cut(s)	1750, 3768, 3909
BtrI	CACGTC	1 cut(s)	1762
BtsI	GCAGTG	1 cut(s)	3352
BtsIMutI	CAGTG	8 cut(s)	96, 516, 757, 1275, 1486, 2290, 3352, 4040
Cac8I	GCNNGC	3 cut(s)	2274, 2364, 3901
CaiI	CAGNNNCTG	3 cut(s)	1469, 1793, 2240
CciI	TCATGA	2 cut(s)	2098, 3664
CfoI	GCGC	4 cut(s)	607, 1449, 1539, 1969
Cfr10I	RCCGGY	1 cut(s)	1410
Cfr13I	GGNCC	5 cut(s)	553, 668, 950, 2223, 2780
CseI	GACGC	3 cut(s)	671, 2933, 3761
Csp6I	GTAC	4 cut(s)	991, 1348, 3307, 3920
CviQI	GTAC	4 cut(s)	991, 1348, 3307, 3920
DinI	GGCGCC	1 cut(s)	606
DraI	TTTAAA	1 cut(s)	46
DrdI	GACNNNNNNGTC	1 cut(s)	3242
DseDI	GACNNNNNNGTC	1 cut(s)	3242
EaeI	YGGCCR	1 cut(s)	2550
Eam1104I	CTCTTC	5 cut(s)	67, 567, 3024, 3964, 4019
EarI	CTCTTC	5 cut(s)	67, 567, 3024, 3964, 4019
EciI	GGCGGA	1 cut(s)	1892
Eco105I	TACGTA	1 cut(s)	1778
Eco130I	CCWWGG	5 cut(s)	1338, 1750, 2226, 3768, 3909
Eco24I	GRGCYC	3 cut(s)	62, 1685, 3777
Eco31I	GGTCTC	4 cut(s)	42, 1740, 2383, 3604
Eco47I	GGWCC	3 cut(s)	553, 950, 2780
Eco47III	AGCGCT	1 cut(s)	1968
Eco57I	CTGAAG	6 cut(s)	1488, 1998, 2195, 2403, 2925, 3566
Eco81I	CCTNAGG	1 cut(s)	342
Eco88I	CYCGRG	3 cut(s)	732, 916, 2069
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRI	GAATTC	2 cut(s)	3315, 3601
EcoRII	CCWGG	2 cut(s)	2219, 3613
EcoT14I	CCWWGG	5 cut(s)	1338, 1750, 2226, 3768, 3909
EcoT38I	GRGCYC	3 cut(s)	62, 1685, 3777
EgeI	GGCGCC	1 cut(s)	606
EheI	GGCGCC	1 cut(s)	606
ErhI	CCWWGG	5 cut(s)	1338, 1750, 2226, 3768, 3909
FalI	AAGNNNNNCTT	2 cut(s)	2551, 2583
FauNDI	CATATG	2 cut(s)	79, 3493
FbaI	TGATCA	3 cut(s)	745, 1483, 1912
FblI	GTMKAC	1 cut(s)	539
FriOI	GRGCYC	3 cut(s)	62, 1685, 3777
FspBI	CTAG	6 cut(s)	582, 1263, 1404, 2117, 2328, 3651
FspI	TGCGCA	1 cut(s)	1538
GlaI	GCGC	4 cut(s)	606, 1448, 1538, 1968
GsaI	CCCAGC	1 cut(s)	2266
GsuI	CTGGAG	3 cut(s)	120, 1407, 2550
HaeII	RGCGCY	2 cut(s)	608, 1970
HaeIII	GGCC	6 cut(s)	669, 2225, 2552, 2706, 3908, 3936
HapII	CCGG	6 cut(s)	33, 658, 1411, 1690, 3342, 3607
HgaI	GACGC	3 cut(s)	671, 2933, 3761
HhaI	GCGC	4 cut(s)	607, 1449, 1539, 1969
Hin1I	GRCGYC	1 cut(s)	605
Hin6I	GCGC	4 cut(s)	605, 1447, 1537, 1967
HinP1I	GCGC	4 cut(s)	605, 1447, 1537, 1967
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	4 cut(s)	415, 939, 1558, 3575
HpaII	CCGG	6 cut(s)	33, 658, 1411, 1690, 3342, 3607
Hpy166II	GTNNAC	9 cut(s)	526, 540, 579, 757, 2627, 2851, 3005, 3383, 3920
Hpy8I	GTNNAC	9 cut(s)	526, 540, 579, 757, 2627, 2851, 3005, 3383, 3920
Hpy99I	CGWCG	3 cut(s)	687, 714, 3755
HpyCH4III	ACNGT	7 cut(s)	394, 441, 648, 724, 752, 761, 2759
HpyCH4IV	ACGT	7 cut(s)	49, 817, 1303, 1308, 1761, 1777, 3136
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1404, 1631, 2222, 2474, 2957, 3182, 3554, 3905, 3942
HpySE526I	ACGT	7 cut(s)	49, 817, 1303, 1308, 1761, 1777, 3136
Hsp92I	GRCGYC	1 cut(s)	605
HspAI	GCGC	4 cut(s)	605, 1447, 1537, 1967
KasI	GGCGCC	1 cut(s)	604
Kpn2I	TCCGGA	1 cut(s)	1689
Ksp22I	TGATCA	3 cut(s)	745, 1483, 1912
LguI	GCTCTTC	3 cut(s)	67, 3964, 4019
LmnI	GCTCC	9 cut(s)	108, 289, 382, 1466, 1688, 2197, 2513, 3344, 3772
LweI	GCATC	7 cut(s)	145, 786, 2193, 2275, 2299, 2938, 2959
MaeI	CTAG	6 cut(s)	582, 1263, 1404, 2117, 2328, 3651
MaeII	ACGT	7 cut(s)	49, 817, 1303, 1308, 1761, 1777, 3136
MaeIII	GTNAC	8 cut(s)	624, 1304, 1498, 1762, 2042, 2993, 3093, 4038
MfeI	CAATTG	1 cut(s)	3273
MflI	RGATCY	5 cut(s)	1108, 1616, 2525, 3388, 3654
MhlI	GDGCHC	3 cut(s)	62, 1685, 3777
MlsI	TGGCCA	1 cut(s)	2552
MluNI	TGGCCA	1 cut(s)	2552
Mly113I	GGCGCC	1 cut(s)	605
MlyI	GAGTC	3 cut(s)	590, 3101, 3623
MmeI	TCCRAC	3 cut(s)	1572, 1584, 3837
Mox20I	TGGCCA	1 cut(s)	2552
MroI	TCCGGA	1 cut(s)	1689
MroXI	GAANNNNTTC	1 cut(s)	3138
MscI	TGGCCA	1 cut(s)	2552
MslI	CAYNNNNRTG	2 cut(s)	1302, 2271
Msp20I	TGGCCA	1 cut(s)	2552
MspA1I	CMGCKG	3 cut(s)	1790, 3182, 3440
MspI	CCGG	6 cut(s)	33, 658, 1411, 1690, 3342, 3607
MspR9I	CCNGG	5 cut(s)	34, 659, 2221, 3607, 3615
MunI	CAATTG	1 cut(s)	3273
Mva1269I	GAATGC	5 cut(s)	1058, 2676, 3415, 3470, 3947
MvaI	CCWGG	2 cut(s)	2221, 3615
MwoI	GCNNNNNNNGC	9 cut(s)	1404, 1631, 2222, 2474, 2957, 3182, 3554, 3905, 3942
NarI	GGCGCC	1 cut(s)	605
NciI	CCSGG	3 cut(s)	34, 659, 3607
NcoI	CCATGG	3 cut(s)	1750, 3768, 3909
NdeI	CATATG	2 cut(s)	79, 3493
NlaIV	GGNNCC	6 cut(s)	443, 606, 1544, 1684, 3656, 3774
NmeAIII	GCCGAG	1 cut(s)	3494
NmuCI	GTSAC	6 cut(s)	1304, 1498, 1762, 2993, 3093, 4038
NsbI	TGCGCA	1 cut(s)	1538
NspI	RCATGY	5 cut(s)	991, 1537, 1600, 2366, 3865
OliI	CACNNNNGTG	1 cut(s)	1302
PaeI	GCATGC	1 cut(s)	2366
PaeR7I	CTCGAG	2 cut(s)	916, 2069
PagI	TCATGA	2 cut(s)	2098, 3664
PasI	CCCWGGG	1 cut(s)	2220
PciSI	GCTCTTC	3 cut(s)	67, 3964, 4019
PcsI	WCGNNNNNNNCGW	2 cut(s)	739, 3018
PctI	GAATGC	5 cut(s)	1058, 2676, 3415, 3470, 3947
PdmI	GAANNNNTTC	1 cut(s)	3138
PflMI	CCANNNNNTGG	2 cut(s)	98, 3727
PfoI	TCCNGGA	1 cut(s)	3605
PleI	GAGTC	3 cut(s)	590, 3100, 3623
PluTI	GGCGCC	1 cut(s)	608
PpsI	GAGTC	3 cut(s)	590, 3100, 3623
Ppu21I	YACGTR	1 cut(s)	1778
PshAI	GACNNNNGTC	1 cut(s)	1752
PshBI	ATTAAT	1 cut(s)	3930
Psp6I	CCWGG	2 cut(s)	2219, 3613
PspFI	CCCAGC	1 cut(s)	2262
PspGI	CCWGG	2 cut(s)	2219, 3613
PspN4I	GGNNCC	6 cut(s)	443, 606, 1544, 1684, 3656, 3774
PspPI	GGNCC	5 cut(s)	553, 668, 950, 2223, 2780
PspXI	VCTCGAGB	1 cut(s)	2069
PstI	CTGCAG	3 cut(s)	1116, 2736, 3181
PstNI	CAGNNNCTG	3 cut(s)	1469, 1793, 2240
PsuI	RGATCY	5 cut(s)	1108, 1616, 2525, 3388, 3654
PvuII	CAGCTG	2 cut(s)	1790, 3440
RsaI	GTAC	4 cut(s)	992, 1349, 3308, 3921
RsaNI	GTAC	4 cut(s)	991, 1348, 3307, 3920
RseI	CAYNNNNRTG	2 cut(s)	1302, 2271
SapI	GCTCTTC	3 cut(s)	67, 3964, 4019
Sau96I	GGNCC	5 cut(s)	553, 668, 950, 2223, 2780
SchI	GAGTC	3 cut(s)	590, 3101, 3623
ScrFI	CCNGG	5 cut(s)	34, 659, 2221, 3607, 3615
SduI	GDGCHC	3 cut(s)	62, 1685, 3777
SfaNI	GCATC	7 cut(s)	145, 786, 2193, 2275, 2299, 2938, 2959
SfcI	CTRYAG	5 cut(s)	1112, 2658, 2732, 3177, 3836
SfoI	GGCGCC	1 cut(s)	606
Sfr274I	CTCGAG	2 cut(s)	916, 2069
SinI	GGWCC	3 cut(s)	553, 950, 2780
SlaI	CTCGAG	2 cut(s)	916, 2069
SmiMI	CAYNNNNRTG	2 cut(s)	1302, 2271
SmlI	CTYRAG	3 cut(s)	224, 916, 2069
SmoI	CTYRAG	3 cut(s)	224, 916, 2069
SnaBI	TACGTA	1 cut(s)	1778
SpeI	ACTAGT	1 cut(s)	2116
SphI	GCATGC	1 cut(s)	2366
SsiI	CCGC	3 cut(s)	1877, 1918, 3182
SspDI	GGCGCC	1 cut(s)	604
SspI	AATATT	2 cut(s)	1651, 3676
SspMI	CTAG	6 cut(s)	582, 1263, 1404, 2117, 2328, 3651
StyD4I	CCNGG	5 cut(s)	32, 657, 2219, 3605, 3613
StyI	CCWWGG	5 cut(s)	1338, 1750, 2226, 3768, 3909
TaaI	ACNGT	7 cut(s)	394, 441, 648, 724, 752, 761, 2759
TaiI	ACGT	7 cut(s)	52, 820, 1306, 1311, 1764, 1780, 3139
TaqI	TCGA	7 cut(s)	685, 917, 1816, 2070, 2085, 2583, 3262
TatI	WGTACW	3 cut(s)	990, 1347, 3919
TauI	GCSGC	1 cut(s)	3185
TscAI	CASTG	8 cut(s)	103, 523, 757, 1275, 1493, 2290, 3352, 4047
TseFI	GTSAC	6 cut(s)	1304, 1498, 1762, 2993, 3093, 4038
Tsp45I	GTSAC	6 cut(s)	1304, 1498, 1762, 2993, 3093, 4038
TspGWI	ACGGA	1 cut(s)	3114
TspRI	CASTG	8 cut(s)	103, 523, 757, 1275, 1493, 2290, 3352, 4047
Van91I	CCANNNNNTGG	2 cut(s)	98, 3727
VpaK11BI	GGWCC	3 cut(s)	553, 950, 2780
VspI	ATTAAT	1 cut(s)	3930
XbaI	TCTAGA	1 cut(s)	1262
XceI	RCATGY	5 cut(s)	991, 1537, 1600, 2366, 3865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1214
XhoI	CTCGAG	2 cut(s)	916, 2069
XmiI	GTMKAC	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	3138
XspI	CTAG	6 cut(s)	582, 1263, 1404, 2117, 2328, 3651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.