Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021899

Physical Location & Seq

Genomic Coordinates Reverse (-)

5360789 .. 5363297

Gene Structure 2509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGTCTTCGTCGTTCTCAGTCACATCTCCAGCTGCTGCTGCTTCCGTCTATGCAGTCACTCAAACCTCCTCGCACTTCCCAATCCAAAACCGCTCTCGCAGAGTTTCTTTCCGTCTCTCTGCTAAGCCCAAGCTTCGCTTTCTCTCCAAGCCTAGTCGCAGTAGCTACCCTGTGGTGAAAGCACAATCTAACAAGGTTAGTACTGGTGCATCATCAAATGCTGCCAAAGTTGATGGGCCATCATCAGCTGAAGGAAAGGAGAAAAACTCATTGAAGGAGTCGTCTGCTTCTTCTCCTGAATTAGCTACAGAAGAGTCTATTTCTGAGTTCCTTACCCAAGTAACAACTCTTGTCAAGCTTGTGGATTCAAGAGACATTGTTGAGTTGCAGTTGAAACAACTCGACTGTGAACTAGTCATTCGAAAAAAAGAAGCCTTACCTCAACCTCAAGCTCCTGCATCTTATGTTATGATGCAGCAACCAAATCAACCATCTTATGCCCAGCAAATGGCTCCTCCTGCTGCACCTGCTGCTGCCGCACCAGCCCCTTCTACGCCAGCCTCTCTGCCTCCACCATCCCCACCTACTCCAGCCAAATCGTCACTTCCTACTGTTAAAAGCCCCATGGCTGGCACATTCTACCGTAGTCCTGCACCTGGTGAACCACCCTTTATTAAGGTTGGAGACAAAGTGCAGAAGGGGCAAGTTCTATGCATTGTTGAAGCCATGAAGTTAATGAATGAAATAGAGTCTGACCATACCGGAACCGTAGTCGATATTGTCGCAGAAGACGGCAAGCCTGTCAGCCTCGACACTCCTCTGTTTGTGGTTCAACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003989 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00620 ko00640 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01212 map00061 map00620 map00640 map00720 map01100 map01110 map01120 map01130 map01200 map01212

Pfam Domains

Protein Families

Biotin_lipoyl

Protein Analysis

280

Amino Acids

29.61

Weight (kDa)

9.11

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	205 - 277	4.9e-24	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16390 AT5G16390
prunus_persica	Prupe.7G000300_v2.0.a1 Prupe.7G000300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	538
Acc36I	ACCTGC	1 cut(s)	538
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	96
AciI	CCGC	2 cut(s)	94, 540
AcuI	CTGAAG	1 cut(s)	273
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	662
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	511, 632, 659
AgsI	TTSAA	5 cut(s)	277, 372, 397, 725, 836
AhlI	ACTAGT	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	7 cut(s)	35, 136, 168, 251, 308, 361, 455
AluI	AGCT	7 cut(s)	35, 136, 168, 251, 308, 361, 455
Alw26I	GTCTC	3 cut(s)	122, 369, 681
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	8 cut(s)	35, 38, 41, 224, 478, 524, 533, 536
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	190, 674
AsuII	TTCGAA	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	798
BbvI	GCAGC	8 cut(s)	22, 25, 28, 211, 490, 511, 520, 523
BccI	CCATC	4 cut(s)	230, 250, 502, 586
BceAI	ACGGC	1 cut(s)	811
BciT130I	CCWGG	1 cut(s)	660
BcoDI	GTCTC	3 cut(s)	122, 369, 681
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	2 cut(s)	156, 416
BfmI	CTRYAG	1 cut(s)	309
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	9 cut(s)	36, 39, 42, 225, 479, 525, 534, 537, 540
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	9 cut(s)	37, 40, 43, 226, 480, 526, 535, 538, 541
BmcAI	AGTACT	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	516, 769
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	3 cut(s)	221, 465, 470
BpiI	GAAGAC	1 cut(s)	798
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	2 cut(s)	15, 576
Bpu1102I	GCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	764
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	3 cut(s)	511, 632, 659
Bse1I	ACTGG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	3 cut(s)	511, 632, 659
BseMII	CTCAG	2 cut(s)	33, 318
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	3 cut(s)	61, 507, 810
BseXI	GCAGC	8 cut(s)	22, 25, 28, 211, 490, 511, 520, 523
BseYI	CCCAGC	1 cut(s)	504
BsgI	GTGCAG	3 cut(s)	510, 639, 716
BshFI	GGCC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	765
BslI	CCNNNNNNNGG	3 cut(s)	511, 632, 659
BsmAI	GTCTC	3 cut(s)	122, 369, 681
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	424
Bsp1720I	GCTNAGC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	2 cut(s)	94, 540
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	2 cut(s)	32, 319
BspLI	GGNNCC	2 cut(s)	516, 769
BspMI	ACCTGC	1 cut(s)	538
BspT104I	TTCGAA	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	627
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	5 cut(s)	410, 616, 647, 772, 840
Bst6I	CTCTTC	1 cut(s)	309
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	561, 634, 800
BstDEI	CTNAG	3 cut(s)	19, 126, 327
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	578
BstMAI	GTCTC	3 cut(s)	122, 369, 681
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 521, 530, 533, 539, 545, 703
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	1 cut(s)	658
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	8 cut(s)	22, 25, 28, 211, 490, 511, 520, 523
BstV2I	GAAGAC	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	578
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	3 cut(s)	561, 634, 800
CaiI	CAGNNNCTG	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	239
CsiI	ACCWGGT	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	2 cut(s)	628, 730
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	3 cut(s)	19, 126, 327
DraIII	CACNNNGTG	1 cut(s)	662
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	627
Eco57I	CTGAAG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	719
ErhI	CCWWGG	1 cut(s)	627
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	2 cut(s)	631, 733
FaiI	YATR	8 cut(s)	54, 468, 473, 501, 629, 715, 731, 762
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	2 cut(s)	627, 729
Fnu4HI	GCNGC	9 cut(s)	36, 39, 42, 225, 479, 525, 534, 537, 540
FokI	GGATG	1 cut(s)	565
Fsp4HI	GCNGC	9 cut(s)	36, 39, 42, 225, 479, 525, 534, 537, 540
FspBI	CTAG	2 cut(s)	156, 416
GluI	GCNGC	9 cut(s)	36, 39, 42, 225, 479, 525, 534, 537, 540
GsaI	CCCAGC	1 cut(s)	508
GsuI	CTGGAG	2 cut(s)	15, 576
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	765
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	631, 733
HindIII	AAGCTT	2 cut(s)	134, 359
HinfI	GANTC	4 cut(s)	281, 317, 368, 752
HpaII	CCGG	1 cut(s)	765
HphI	GGTGA	2 cut(s)	190, 674
Hpy166II	GTNNAC	2 cut(s)	413, 665
Hpy188I	TCNGA	2 cut(s)	328, 757
Hpy188III	TCNNGA	2 cut(s)	299, 372
Hpy8I	GTNNAC	2 cut(s)	413, 665
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	248, 271, 561, 694
HpyCH4III	ACNGT	5 cut(s)	410, 616, 647, 772, 840
HpyCH4V	TGCA	9 cut(s)	56, 212, 391, 461, 478, 527, 656, 697, 717
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 521, 530, 533, 539, 545, 703
HpyF3I	CTNAG	3 cut(s)	19, 126, 327
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	631, 733
LmnI	GCTCC	2 cut(s)	460, 520
Lsp1109I	GCAGC	8 cut(s)	22, 25, 28, 211, 490, 511, 520, 523
LweI	GCATC	3 cut(s)	221, 465, 470
MabI	ACCWGGT	1 cut(s)	658
MaeI	CTAG	2 cut(s)	156, 416
MaeIII	GTNAC	4 cut(s)	22, 58, 343, 603
MbiI	CCGCTC	1 cut(s)	96
MboII	GAAGA	3 cut(s)	285, 326, 803
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	3 cut(s)	290, 326, 761
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	9 cut(s)	79, 82, 453, 459, 528, 574, 582, 821, 831
Mph1103I	ATGCAT	1 cut(s)	719
MseI	TTAA	3 cut(s)	618, 678, 737
MspA1I	CMGCKG	2 cut(s)	35, 251
MspI	CCGG	1 cut(s)	765
MspR9I	CCNGG	1 cut(s)	660
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	7 cut(s)	41, 521, 530, 533, 539, 545, 703
NcoI	CCATGG	1 cut(s)	627
NlaIII	CATG	2 cut(s)	631, 733
NlaIV	GGNNCC	2 cut(s)	516, 769
NmuCI	GTSAC	3 cut(s)	22, 58, 603
NsiI	ATGCAT	1 cut(s)	719
NspV	TTCGAA	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	9 cut(s)	37, 40, 43, 226, 480, 526, 535, 538, 541
PleI	GAGTC	3 cut(s)	289, 325, 760
PpsI	GAGTC	3 cut(s)	289, 325, 760
Psp6I	CCWGG	1 cut(s)	658
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	2 cut(s)	516, 769
PspPI	GGNCC	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	38
PvuII	CAGCTG	2 cut(s)	35, 251
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	618, 678, 737
SatI	GCNGC	9 cut(s)	36, 39, 42, 225, 479, 525, 534, 537, 540
Sau96I	GGNCC	1 cut(s)	239
ScaI	AGTACT	1 cut(s)	205
SchI	GAGTC	3 cut(s)	290, 326, 761
ScrFI	CCNGG	1 cut(s)	660
SexAI	ACCWGGT	1 cut(s)	658
SfaNI	GCATC	3 cut(s)	221, 465, 470
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	424
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	2 cut(s)	94, 540
SspMI	CTAG	2 cut(s)	156, 416
StyD4I	CCNGG	1 cut(s)	658
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	5 cut(s)	410, 616, 647, 772, 840
TaqI	TCGA	4 cut(s)	405, 424, 777, 813
TasI	AATT	1 cut(s)	302
TatI	WGTACW	1 cut(s)	203
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	618, 678, 737
Tru9I	TTAA	3 cut(s)	618, 678, 737
TseFI	GTSAC	3 cut(s)	22, 58, 603
TseI	GCWGC	8 cut(s)	35, 38, 41, 224, 478, 524, 533, 536
Tsp45I	GTSAC	3 cut(s)	22, 58, 603
TspDTI	ATGAA	3 cut(s)	746, 755, 759
TspGWI	ACGGA	2 cut(s)	37, 104
Van91I	CCANNNNNTGG	1 cut(s)	511
XspI	CTAG	2 cut(s)	156, 416
ZrmI	AGTACT	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.