Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020248

Physical Location & Seq

Genomic Coordinates Forward (+)

6138242 .. 6141687

Gene Structure 3446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGGTTCTGGTTTAAATGACACATTATCTCGGAACTACAATGGTTTGGAGCTATGGGAGATAATAGTGATTGTTCTCTCCGCGATATTCGTTGTAGTTTTAGCTATATCGCTATGGCTTACTTTCAGAAGAAAAACCTCTAGATCTTCTTCTAATCTAATCCCTGTTAGTCGCCAGATTCCTCCTAGTGTTCCTGAAGAGATTAAAGAGATTAGAGTCGACGAGGTTTCTTCAAGCAATGGTGGGAATGGATACCCCTCTATTAGTGAGAAATTTGGCGATAAAGAACCCGAAAAAGGGATAAAAGCAGAGTCAGAAAATGGCGATAGTAGCCGGTCAGGCTCGTTTAATCACTTGGAGAAAAAAGACGGATCGAGCGTATCTTCTGCTAATCCTTTGACAGCTCCATCTCCTTTGTCTGGTCTTCCTGAGTTTTCTCACCTTGGATGGGGACATTGGTTCACTCTTAGAGATCTTCAGATGGCTACTAATCAGTTTTCAAGGGATAATATCATCGGTGATGGTGGATATGGAGTTGTTTACCGCGGTAACCTTGTTAATGGTACTCCTGTTGCTGTTAAAAAGTTGCTCAACAATTTAGGACAAGCTGATAAAGACTTCAGAGTTGAAGTTGAAGCTATAGGTCACGTTCGACATAAAAACTTGGTCCGCCTTCTCGGATATTGTATGGAAGGAACGCAGAGGATGCTGGTGTATGAGTATGTTAACAATGGAAATTTGGAGCAATGGCTCCGTGGAGACAATCAAAATCATGAGTATCTTACATGGGAGGCACGAGTGAAAATTCTTATTGGGACAGCCAAAGCGCTCGCGTACCTTCACGAGGCGATTGAGCCAAAAGTGGTGCACAGAGACATTAAGTCTAGTAACATTCTGATTGATGACAAATTCAATTCTAAAATTTCTGACTTTGGACTTGCTAAACTACTTGGTGCTGATAAGAGTTTTATAACTACTAGAGTTATGGGTACCTTCGGTTACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGCGATGTCTACAGCTTCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCACCACCCGAGGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACAAAGACGATCAGAAGAAGTGGTTGATCCAAACCTTGAAACAAAACCATCTACAAGTGCTTTGAAAAGAACACTATTGACTGCTTTGAGATGTGTTGATCCAATGTCTGAGAAAAGACCGAGGATGAGCCAAGTTGCACGTATGCTTGAATCCGAAGAATACCCAATTGCTAGAGAGGATAGGAGAAGACGAAGGAGTCAGAACGGGACAACAAGAGATTCAGATCCTCCGAGGAACAGCACAGACACTGACAAGAGTGAGTACCATGACCTAAAGCCTGAAGGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

484

Amino Acids

54.21

Weight (kDa)

6.83

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	167 - 433	3e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	169 - 437	2.6e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18500 AT5G18500 AT5G18500 AT5G18500 AT5G18500 AT5G18500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	971
AasI	GACNNNNNNGTC	1 cut(s)	1359
Acc65I	GGTACC	1 cut(s)	989
AccB1I	GGYRCC	1 cut(s)	989
AccI	GTMKAC	3 cut(s)	219, 1053, 1104
AccII	CGCG	3 cut(s)	83, 546, 833
AciI	CCGC	4 cut(s)	81, 544, 546, 670
AclWI	GGATC	4 cut(s)	379, 1184, 1256, 1382
AcsI	RAATTY	6 cut(s)	272, 736, 804, 908, 921, 1021
AcuI	CTGAAG	4 cut(s)	216, 461, 604, 1169
AfaI	GTAC	6 cut(s)	565, 836, 991, 1071, 1131, 1427
AfeI	AGCGCT	1 cut(s)	828
AfiI	CCNNNNNNNGG	6 cut(s)	296, 297, 419, 448, 844, 1448
AgsI	TTSAA	8 cut(s)	234, 501, 629, 635, 913, 1202, 1228, 1313
AhdI	GACNNNNNGTC	1 cut(s)	880
AluBI	AGCT	8 cut(s)	52, 104, 404, 608, 638, 1007, 1059, 1082
AluI	AGCT	8 cut(s)	52, 104, 404, 608, 638, 1007, 1059, 1082
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	753, 867
Alw44I	GTGCAC	1 cut(s)	866
AlwI	GGATC	4 cut(s)	379, 1184, 1256, 1382
AlwNI	CAGNNNCTG	1 cut(s)	1412
Ama87I	CYCGRG	1 cut(s)	1124
Aor51HI	AGCGCT	1 cut(s)	828
ApaLI	GTGCAC	1 cut(s)	866
ApoI	RAATTY	6 cut(s)	272, 736, 804, 908, 921, 1021
Asp718I	GGTACC	1 cut(s)	989
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	2 cut(s)	667, 1159
AsuHPI	GGTGA	2 cut(s)	431, 530
AvaI	CYCGRG	1 cut(s)	1124
AvaII	GGWCC	2 cut(s)	667, 1159
BaeGI	GKGCMC	1 cut(s)	870
BaeI	ACNNNNGTAYC	2 cut(s)	555, 588
BanI	GGYRCC	1 cut(s)	989
BauI	CACGAG	2 cut(s)	795, 842
BbsI	GAAGAC	3 cut(s)	416, 1022, 1357
Bbv12I	GWGCWC	1 cut(s)	870
BccI	CCATC	6 cut(s)	415, 441, 475, 515, 1150, 1219
BciVI	GTATCC	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	753, 867
BfaI	CTAG	5 cut(s)	141, 186, 885, 978, 1335
BfmI	CTRYAG	2 cut(s)	639, 1054
BfoI	RGCGCY	1 cut(s)	830
BfuI	GTATCC	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	339
BglII	AGATCT	2 cut(s)	143, 472
Bme18I	GGWCC	2 cut(s)	667, 1159
BmeRI	GACNNNNNGTC	1 cut(s)	880
BmeT110I	CYCGRG	1 cut(s)	1124
BmgT120I	GGNCC	2 cut(s)	667, 1159
BmiI	GGNNCC	2 cut(s)	752, 991
BmsI	GCATC	1 cut(s)	696
BpiI	GAAGAC	3 cut(s)	416, 1022, 1357
BpmI	CTGGAG	1 cut(s)	993
BsaAI	YACGTR	2 cut(s)	1003, 1304
BsaBI	GATNNNNATC	1 cut(s)	1386
BsaJI	CCNNGG	6 cut(s)	442, 544, 754, 1125, 1283, 1394
BsaWI	WCCGGW	2 cut(s)	1025, 1099
Bsc4I	CCNNNNNNNGG	6 cut(s)	296, 297, 419, 448, 844, 1448
Bse118I	RCCGGY	1 cut(s)	333
Bse1I	ACTGG	1 cut(s)	1093
Bse3DI	GCAATG	2 cut(s)	244, 752
Bse8I	GATNNNNATC	1 cut(s)	1386
BseDI	CCNNGG	6 cut(s)	442, 544, 754, 1125, 1283, 1394
BseGI	GGATG	3 cut(s)	452, 711, 1293
BseJI	GATNNNNATC	1 cut(s)	1386
BseLI	CCNNNNNNNGG	6 cut(s)	296, 297, 419, 448, 844, 1448
BseMI	GCAATG	2 cut(s)	244, 752
BseMII	CTCAG	2 cut(s)	420, 1263
BseNI	ACTGG	1 cut(s)	1093
BseSI	GKGCMC	1 cut(s)	870
Bsh1236I	CGCG	3 cut(s)	83, 546, 833
BshNI	GGYRCC	1 cut(s)	989
BsiHKAI	GWGCWC	1 cut(s)	870
BsiHKCI	CYCGRG	1 cut(s)	1124
BsiSI	CCGG	3 cut(s)	334, 1026, 1100
BslFI	GGGAC	3 cut(s)	465, 829, 1384
BslI	CCNNNNNNNGG	6 cut(s)	296, 297, 419, 448, 844, 1448
BsmAI	GTCTC	2 cut(s)	753, 867
BsmFI	GGGAC	3 cut(s)	465, 829, 1384
BsoBI	CYCGRG	1 cut(s)	1124
Bsp1286I	GDGCHC	1 cut(s)	870
Bsp143I	GATC	7 cut(s)	143, 371, 472, 1172, 1189, 1261, 1387
BspACI	CCGC	4 cut(s)	81, 544, 546, 670
BspCNI	CTCAG	2 cut(s)	421, 1264
BspFNI	CGCG	3 cut(s)	83, 546, 833
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	752, 991
BspPI	GGATC	4 cut(s)	379, 1184, 1256, 1382
BspT107I	GGYRCC	1 cut(s)	989
BsrDI	GCAATG	2 cut(s)	244, 752
BsrFI	RCCGGY	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	1093
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	6 cut(s)	442, 544, 754, 1125, 1283, 1394
BssMI	GATC	7 cut(s)	143, 371, 472, 1172, 1189, 1261, 1387
BssSI	CACGAG	2 cut(s)	795, 842
BssT1I	CCWWGG	1 cut(s)	442
Bst2BI	CACGAG	2 cut(s)	795, 842
Bst6I	CTCTTC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	706
BstBAI	YACGTR	2 cut(s)	1003, 1304
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	3 cut(s)	429, 467, 1272
BstDSI	CCRYGG	2 cut(s)	544, 754
BstEII	GGTNACC	1 cut(s)	548
BstENI	CCTNNNNNAGG	1 cut(s)	842
BstF5I	GGATG	3 cut(s)	452, 711, 1293
BstFNI	CGCG	3 cut(s)	83, 546, 833
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	1 cut(s)	829
BstKTI	GATC	7 cut(s)	146, 374, 475, 1175, 1192, 1264, 1390
BstMAI	GTCTC	2 cut(s)	753, 867
BstMBI	GATC	7 cut(s)	143, 371, 472, 1172, 1189, 1261, 1387
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 339, 706
BstPI	GGTNACC	1 cut(s)	548
BstSFI	CTRYAG	2 cut(s)	639, 1054
BstSLI	GKGCMC	1 cut(s)	870
BstSNI	TACGTA	1 cut(s)	1003
BstUI	CGCG	3 cut(s)	83, 546, 833
BstV2I	GAAGAC	3 cut(s)	416, 1022, 1357
BstX2I	RGATCY	3 cut(s)	143, 472, 1387
BstYI	RGATCY	3 cut(s)	143, 472, 1387
BsuI	GTATCC	1 cut(s)	245
BtgI	CCRYGG	2 cut(s)	544, 754
BtgZI	GCGATG	1 cut(s)	1062
BtsCI	GGATG	3 cut(s)	452, 711, 1293
BtsIMutI	CAGTG	1 cut(s)	1410
Cac8I	GCNNGC	1 cut(s)	831
CaiI	CAGNNNCTG	1 cut(s)	1412
CciI	TCATGA	1 cut(s)	772
CfoI	GCGC	1 cut(s)	829
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	667, 1159
Cfr42I	CCGCGG	1 cut(s)	547
Csp6I	GTAC	6 cut(s)	564, 835, 990, 1070, 1130, 1426
CviAII	CATG	3 cut(s)	773, 786, 1430
CviQI	GTAC	6 cut(s)	564, 835, 990, 1070, 1130, 1426
DdeI	CTNAG	3 cut(s)	429, 467, 1272
DpnI	GATC	7 cut(s)	145, 373, 474, 1174, 1191, 1263, 1389
DpnII	GATC	7 cut(s)	143, 371, 472, 1172, 1189, 1261, 1387
DraI	TTTAAA	1 cut(s)	15
DrdI	GACNNNNNNGTC	1 cut(s)	1359
DriI	GACNNNNNGTC	1 cut(s)	880
DseDI	GACNNNNNNGTC	1 cut(s)	1359
Eam1104I	CTCTTC	1 cut(s)	192
Eam1105I	GACNNNNNGTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	659
Eco105I	TACGTA	1 cut(s)	1003
Eco130I	CCWWGG	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	1097
Eco47I	GGWCC	2 cut(s)	667, 1159
Eco47III	AGCGCT	1 cut(s)	828
Eco57I	CTGAAG	4 cut(s)	216, 461, 604, 1169
Eco88I	CYCGRG	1 cut(s)	1124
Eco91I	GGTNACC	1 cut(s)	548
EcoNI	CCTNNNNNAGG	1 cut(s)	842
EcoO65I	GGTNACC	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	1021
EcoRV	GATATC	1 cut(s)	1097
EcoT14I	CCWWGG	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	3 cut(s)	776, 789, 1433
FaqI	GGGAC	3 cut(s)	465, 829, 1384
FatI	CATG	3 cut(s)	772, 785, 1429
FblI	GTMKAC	3 cut(s)	219, 1053, 1104
FokI	GGATG	3 cut(s)	459, 718, 1300
FspBI	CTAG	5 cut(s)	141, 186, 885, 978, 1335
GlaI	GCGC	1 cut(s)	828
GsuI	CTGGAG	1 cut(s)	993
HaeII	RGCGCY	1 cut(s)	830
HapII	CCGG	3 cut(s)	334, 1026, 1100
HhaI	GCGC	1 cut(s)	829
Hin1II	CATG	3 cut(s)	776, 789, 1433
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HincII	GTYRAC	2 cut(s)	220, 727
HindII	GTYRAC	2 cut(s)	220, 727
HinfI	GANTC	6 cut(s)	178, 216, 311, 1313, 1360, 1382
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	3 cut(s)	334, 1026, 1100
HphI	GGTGA	2 cut(s)	431, 530
Hpy166II	GTNNAC	8 cut(s)	220, 462, 541, 727, 868, 1054, 1105, 1118
Hpy188III	TCNNGA	6 cut(s)	141, 194, 428, 773, 842, 1010
Hpy8I	GTNNAC	8 cut(s)	220, 462, 541, 727, 868, 1054, 1105, 1118
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	6 cut(s)	683, 686, 848, 1003, 1350, 1439
HpyCH4IV	ACGT	3 cut(s)	648, 1002, 1303
HpyCH4V	TGCA	2 cut(s)	868, 1301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 339, 706
HpyF3I	CTNAG	3 cut(s)	429, 467, 1272
HpySE526I	ACGT	3 cut(s)	648, 1002, 1303
Hsp92II	CATG	3 cut(s)	776, 789, 1433
HspAI	GCGC	1 cut(s)	827
KpnI	GGTACC	1 cut(s)	993
KspAI	GTTAAC	1 cut(s)	727
KspI	CCGCGG	1 cut(s)	547
Kzo9I	GATC	7 cut(s)	143, 371, 472, 1172, 1189, 1261, 1387
LmnI	GCTCC	5 cut(s)	49, 409, 742, 756, 1012
LweI	GCATC	1 cut(s)	696
MaeI	CTAG	5 cut(s)	141, 186, 885, 978, 1335
MaeII	ACGT	3 cut(s)	648, 1002, 1303
MaeIII	GTNAC	4 cut(s)	548, 644, 887, 998
MalI	GATC	7 cut(s)	145, 373, 474, 1174, 1191, 1263, 1389
MboI	GATC	7 cut(s)	143, 371, 472, 1172, 1189, 1261, 1387
MfeI	CAATTG	1 cut(s)	1329
MflI	RGATCY	3 cut(s)	143, 472, 1387
MhlI	GDGCHC	1 cut(s)	870
MluCI	AATT	9 cut(s)	272, 595, 736, 804, 908, 913, 921, 1021, 1329
MlyI	GAGTC	3 cut(s)	225, 320, 1369
MmeI	TCCRAC	1 cut(s)	1186
MseI	TTAA	7 cut(s)	14, 204, 348, 558, 579, 726, 879
MspA1I	CMGCKG	1 cut(s)	546
MspI	CCGG	3 cut(s)	334, 1026, 1100
MunI	CAATTG	1 cut(s)	1329
MvnI	CGCG	3 cut(s)	83, 546, 833
MwoI	GCNNNNNNNGC	3 cut(s)	330, 339, 706
NdeII	GATC	7 cut(s)	143, 371, 472, 1172, 1189, 1261, 1387
NlaIII	CATG	3 cut(s)	776, 789, 1433
NlaIV	GGNNCC	2 cut(s)	752, 991
NmuCI	GTSAC	1 cut(s)	644
PagI	TCATGA	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	178, 1313, 1382
PleI	GAGTC	3 cut(s)	224, 319, 1368
PpsI	GAGTC	3 cut(s)	224, 319, 1368
Ppu21I	YACGTR	2 cut(s)	1003, 1304
PsiI	TTATAA	1 cut(s)	971
PspEI	GGTNACC	1 cut(s)	548
PspN4I	GGNNCC	2 cut(s)	752, 991
PspPI	GGNCC	2 cut(s)	667, 1159
PstNI	CAGNNNCTG	1 cut(s)	1412
PsuI	RGATCY	3 cut(s)	143, 472, 1387
RsaI	GTAC	6 cut(s)	565, 836, 991, 1071, 1131, 1427
RsaNI	GTAC	6 cut(s)	564, 835, 990, 1070, 1130, 1426
SacII	CCGCGG	1 cut(s)	547
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	7 cut(s)	14, 204, 348, 558, 579, 726, 879
Sau3AI	GATC	7 cut(s)	143, 371, 472, 1172, 1189, 1261, 1387
Sau96I	GGNCC	2 cut(s)	667, 1159
SchI	GAGTC	3 cut(s)	225, 320, 1369
SduI	GDGCHC	1 cut(s)	870
SfaNI	GCATC	1 cut(s)	696
SfcI	CTRYAG	2 cut(s)	639, 1054
Sfr303I	CCGCGG	1 cut(s)	547
SgrBI	CCGCGG	1 cut(s)	547
SinI	GGWCC	2 cut(s)	667, 1159
SnaBI	TACGTA	1 cut(s)	1003
Sse9I	AATT	9 cut(s)	272, 595, 736, 804, 908, 913, 921, 1021, 1329
SsiI	CCGC	4 cut(s)	81, 544, 546, 670
SspMI	CTAG	5 cut(s)	141, 186, 885, 978, 1335
StyI	CCWWGG	1 cut(s)	442
TaiI	ACGT	3 cut(s)	651, 1005, 1306
TaqI	TCGA	3 cut(s)	219, 374, 652
TaqII	GACCGA	1 cut(s)	1297
TasI	AATT	9 cut(s)	272, 595, 736, 804, 908, 913, 921, 1021, 1329
TatI	WGTACW	1 cut(s)	1069
TfiI	GAWTC	3 cut(s)	178, 1313, 1382
Tru1I	TTAA	7 cut(s)	14, 204, 348, 558, 579, 726, 879
Tru9I	TTAA	7 cut(s)	14, 204, 348, 558, 579, 726, 879
TscAI	CASTG	1 cut(s)	1417
TseFI	GTSAC	1 cut(s)	644
Tsp45I	GTSAC	1 cut(s)	644
TspGWI	ACGGA	2 cut(s)	384, 743
TspRI	CASTG	1 cut(s)	1417
VneI	GTGCAC	1 cut(s)	866
VpaK11BI	GGWCC	2 cut(s)	667, 1159
XagI	CCTNNNNNAGG	1 cut(s)	842
XapI	RAATTY	6 cut(s)	272, 736, 804, 908, 921, 1021
XbaI	TCTAGA	1 cut(s)	140
XmiI	GTMKAC	3 cut(s)	219, 1053, 1104
XspI	CTAG	5 cut(s)	141, 186, 885, 978, 1335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.