AT5G23020

Belongs to the alpha-IPM synthase homocitrate synthase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
7718118 .. 7721866
3749 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23020.1

Sequence Viewer

Length: 1512 bp
ATGGCTTCGTTACTTCTCACATCGTCGAGTATGATAACCACTAGCTGTCGCTCCATGGTTCTCCGGTCAGGGTTACCCATCGGATCTTCTTTTCCCTCTCTTCGCCTGACCCGTCCATACGACAAGGCGACTCTGTTCGTCTCATGTTGCTCCGCTGAGTCCAAAAAGGTGGCAACTAGTGCTACTGATCTCAAACCTATCATGGAACGGAGGCCGGAGTACATTCCGAACAAGCTTCCCCACAAGAACTATGTGCGTGTATTAGACACGACGCTTCGTGACGGTGAACAATCTCCCGGTGCAGCACTTACTCCACCGCAGAAGTTAGAGATTGCCAGGCAGCTAGCTAAACTCCGAGTAGACATCATGGAAGTTGGTTTTCCGGTGTCGTCTGAGGAAGAATTCGAAGCTATTAAAACCATCGCCAAGACCGTGGGGAACGAGGTGGATGAGGAAACCGGTTACGTTCCTGTGATATGCGGCATTGCACGATGCAAAAAGAGAGACATCGAGGCAACTTGGGAGGCACTGAAGTATGCGAAGAGGCCGAGGGTAATGCTATTCACATCTACTAGTGAAATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAAGTGATCGAGATGGCCGTGAACAGTGTTAAGTACGCTAAAAGCTTGGGCTTCAAAGACATCCAATTTGGGTGCGAAGATGGCGGCAGGACGGAGAAAGATTTTATATGTAAGATTCTAGGAGAATCGATAAAAGCGGGTGCAACCACGGTGGGGTTTGCGGACACGGTCGGGATCAACATGCCGCAAGAATTCGGAGAACTCGTGGCCTATGTCATAGAAAACACTCCAGGGGCTGATGATATTGTCTTCGCCATTCATTGTCATAACGACCTTGGTGTTGCTACCGCCAACACAATATCCGGTATATGTGCGGGAGCAAGACAAGTCGAAGTGACGATCAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGAATCTCTGATGGATGGTGTTTACACAAAAATAGACTCACGCCAAATTATGGCTACAAGCAAGATGGTTCAAGAGCATACCGGCATGTATGTTCAACCACATAAGCCAATAGTTGGAGACAACTGTTTTGTTCATGAGAGCGGCATTCACCAGGATGGAATATTGAAAAATCGAAGTACATATGAGATCTTATCACCAGAAGATGTTGGGATCGTAAAATCTGAAAATTCTGGCATTGTTCTTGGAAAGCTTAGCGGACGTCATGCTGTAAAAGACCGGCTTAAAGAGTTGGGATATGAAATCAGTGATGAGAAATTCAACGACATCTTCTCACGATACAGAGAATTAACGAAGGACAAAAAGAGAATCACAGACGCTGATCTGAAGGCATTAGTGGTGAACGGTGCTGAAATCTCATCAGAAAAATTAAACAGTAAAGGAATTAACGACCTTATGTCAAGCCCTCAGATTTCCGCTGTTGTATAA

Protein Analysis

503

Amino Acids

55.23

Weight (kDa)

6.78

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMGL-like PF00682 85 - 365 1.6e-87 HMGL-like
HCS_D2 PF22617 379 - 462 3e-27 Homocitrate synthase post-HMGL domain-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020155)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23010 AT5G23010 AT5G23010 AT5G23020
malus_domestica MD05G1155100.v1.1
pyrus_communis pycom05g14850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1288
AccB7I CCANNNNNTGG 2 cut(s) 1075, 1139
AccBSI CCGCTC 1 cut(s) 1167
AccI GTMKAC 1 cut(s) 360
AclWI GGATC 3 cut(s) 91, 797, 1244
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 5 cut(s) 401, 579, 806, 1252, 1340
AcuI CTGAAG 2 cut(s) 551, 1430
AcyI GRCGYC 1 cut(s) 1285
AfaI GTAC 3 cut(s) 221, 650, 1204
AfiI CCNNNNNNNGG 3 cut(s) 768, 1075, 1139
AgeI ACCGGT 1 cut(s) 458
AgsI TTSAA 8 cut(s) 601, 670, 995, 1015, 1097, 1121, 1192, 1345
AhdI GACNNNNNGTC 1 cut(s) 1480
AhlI ACTAGT 2 cut(s) 176, 572
AjnI CCWGG 3 cut(s) 335, 844, 1176
AluBI AGCT 7 cut(s) 45, 235, 343, 347, 410, 660, 1276
AluI AGCT 7 cut(s) 45, 235, 343, 347, 410, 660, 1276
Alw26I GTCTC 3 cut(s) 145, 498, 1137
AlwI GGATC 3 cut(s) 91, 797, 1244
AlwNI CAGNNNCTG 2 cut(s) 851, 1403
AoxI GGCC 4 cut(s) 212, 545, 630, 822
ApeKI GCWGC 2 cut(s) 302, 340
ApoI RAATTY 5 cut(s) 401, 579, 806, 1252, 1340
ArsI GACNNNNNNTTYG 4 cut(s) 665, 697, 1136, 1168
AsiGI ACCGGT 1 cut(s) 458
AspLEI GCGC 1 cut(s) 988
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 5 cut(s) 296, 980, 1166, 1212, 1435
AsuII TTCGAA 1 cut(s) 405
AsuNHI GCTAGC 1 cut(s) 343
BauI CACGAG 1 cut(s) 818
BbsI GAAGAC 1 cut(s) 856
BbvI GCAGC 2 cut(s) 314, 352
BccI CCATC 9 cut(s) 86, 428, 622, 689, 1000, 1030, 1034, 1084, 1175
BceAI ACGGC 1 cut(s) 617
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 3 cut(s) 337, 846, 1178
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 3 cut(s) 145, 498, 1137
BcuI ACTAGT 2 cut(s) 176, 572
BfaI CTAG 5 cut(s) 42, 177, 344, 573, 734
BglII AGATCT 1 cut(s) 1212
BisI GCNGC 7 cut(s) 303, 341, 481, 700, 800, 989, 1168
BlpI GCTNAGC 1 cut(s) 1277
BlsI GCNGC 7 cut(s) 304, 342, 482, 701, 801, 990, 1169
Bme1390I CCNGG 4 cut(s) 297, 337, 846, 1178
BmeRI GACNNNNNGTC 1 cut(s) 1480
BmrFI CCNGG 4 cut(s) 297, 337, 846, 1178
BmsI GCATC 1 cut(s) 482
BmtI GCTAGC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 856
BpmI CTGGAG 1 cut(s) 828
Bpu1102I GCTNAGC 1 cut(s) 1277
Bpu14I TTCGAA 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 297
Bsa29I ATCGAT 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 1285
BsaJI CCNNGG 6 cut(s) 54, 432, 548, 762, 845, 889
BsaWI WCCGGW 4 cut(s) 63, 382, 458, 917
BsaXI ACNNNNNCTCC 2 cut(s) 804, 834
Bsc4I CCNNNNNNNGG 3 cut(s) 768, 1075, 1139
Bse118I RCCGGY 3 cut(s) 458, 1106, 1302
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 3 cut(s) 337, 846, 1178
BseCI ATCGAT 1 cut(s) 743
BseDI CCNNGG 6 cut(s) 54, 432, 548, 762, 845, 889
BseGI GGATG 4 cut(s) 454, 675, 1045, 1186
BseLI CCNNNNNNNGG 3 cut(s) 768, 1075, 1139
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 3 cut(s) 147, 384, 1505
BseRI GAGGAG 1 cut(s) 1038
BseXI GCAGC 2 cut(s) 314, 352
BsgI GTGCAG 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 786
BshFI GGCC 4 cut(s) 214, 547, 632, 824
BshTI ACCGGT 1 cut(s) 458
BshVI ATCGAT 1 cut(s) 743
BsiEI CGRYCG 1 cut(s) 786
BsiSI CCGG 8 cut(s) 64, 215, 297, 383, 459, 918, 1107, 1303
BslI CCNNNNNNNGG 3 cut(s) 768, 1075, 1139
BsmAI GTCTC 3 cut(s) 145, 498, 1137
BsmBI CGTCTC 1 cut(s) 145
BsmI GAATGC 2 cut(s) 988, 1170
BsnI GGCC 4 cut(s) 214, 547, 632, 824
Bsp119I TTCGAA 1 cut(s) 405
Bsp143I GATC 8 cut(s) 83, 187, 621, 789, 954, 1212, 1236, 1405
Bsp1720I GCTNAGC 1 cut(s) 1277
Bsp19I CCATGG 1 cut(s) 54
BspANI GGCC 4 cut(s) 214, 547, 632, 824
BspCNI CTCAG 3 cut(s) 148, 385, 1504
BspDI ATCGAT 1 cut(s) 743
BspHI TCATGA 1 cut(s) 1159
BspOI GCTAGC 1 cut(s) 347
BspPI GGATC 3 cut(s) 91, 797, 1244
BspT104I TTCGAA 1 cut(s) 405
BsrBI CCGCTC 1 cut(s) 1167
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 3 cut(s) 458, 1106, 1302
BssAI RCCGGY 3 cut(s) 458, 1106, 1302
BssECI CCNNGG 6 cut(s) 54, 432, 548, 762, 845, 889
BssMI GATC 8 cut(s) 83, 187, 621, 789, 954, 1212, 1236, 1405
BssNI GRCGYC 1 cut(s) 1285
BssSI CACGAG 1 cut(s) 818
BssT1I CCWWGG 2 cut(s) 54, 889
Bst2BI CACGAG 1 cut(s) 818
Bst2UI CCWGG 3 cut(s) 337, 846, 1178
Bst4CI ACNGT 8 cut(s) 284, 433, 641, 766, 784, 1151, 1430, 1460
Bst6I CTCTTC 3 cut(s) 105, 536, 990
BstACI GRCGYC 1 cut(s) 1285
BstAPI GCANNNNNTGC 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 4 cut(s) 156, 393, 1277, 1491
BstDSI CCRYGG 3 cut(s) 54, 432, 762
BstEII GGTNACC 1 cut(s) 72
BstF5I GGATG 4 cut(s) 454, 675, 1045, 1186
BstHHI GCGC 1 cut(s) 988
BstKTI GATC 8 cut(s) 86, 190, 624, 792, 957, 1215, 1239, 1408
BstMAI GTCTC 3 cut(s) 145, 498, 1137
BstMBI GATC 8 cut(s) 83, 187, 621, 789, 954, 1212, 1236, 1405
BstMCI CGRYCG 1 cut(s) 786
BstMWI GCNNNNNNNGC 2 cut(s) 179, 696
BstNI CCWGG 3 cut(s) 337, 846, 1178
BstNSI RCATGY 2 cut(s) 799, 1114
BstPI GGTNACC 1 cut(s) 72
BstSCI CCNGG 4 cut(s) 295, 335, 844, 1176
BstV1I GCAGC 2 cut(s) 314, 352
BstV2I GAAGAC 1 cut(s) 856
BstX2I RGATCY 2 cut(s) 83, 1212
BstXI CCANNNNNNTGG 2 cut(s) 169, 433
BstYI RGATCY 2 cut(s) 83, 1212
Bsu15I ATCGAT 1 cut(s) 743
BsuRI GGCC 4 cut(s) 214, 547, 632, 824
BsuTUI ATCGAT 1 cut(s) 743
BtgI CCRYGG 3 cut(s) 54, 432, 762
BtgZI GCGATG 1 cut(s) 406
BtsCI GGATG 4 cut(s) 454, 675, 1045, 1186
BtsIMutI CAGTG 3 cut(s) 527, 646, 1336
Cac8I GCNNGC 1 cut(s) 345
CaiI CAGNNNCTG 2 cut(s) 851, 1403
CciI TCATGA 1 cut(s) 1159
CfoI GCGC 1 cut(s) 988
Cfr10I RCCGGY 3 cut(s) 458, 1106, 1302
ClaI ATCGAT 1 cut(s) 743
CseI GACGC 2 cut(s) 280, 1409
Csp6I GTAC 3 cut(s) 220, 649, 1203
CspAI ACCGGT 1 cut(s) 458
CspCI CAANNNNNGTGG 2 cut(s) 747, 782
CviAII CATG 9 cut(s) 55, 144, 202, 367, 586, 796, 1111, 1160, 1289
CviQI GTAC 3 cut(s) 220, 649, 1203
DdeI CTNAG 4 cut(s) 156, 393, 1277, 1491
DpnI GATC 8 cut(s) 85, 189, 623, 791, 956, 1214, 1238, 1407
DpnII GATC 8 cut(s) 83, 187, 621, 789, 954, 1212, 1236, 1405
DriI GACNNNNNGTC 1 cut(s) 1480
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 3 cut(s) 105, 536, 990
Eam1105I GACNNNNNGTC 1 cut(s) 1480
EarI CTCTTC 3 cut(s) 105, 536, 990
Eco130I CCWWGG 2 cut(s) 54, 889
Eco57I CTGAAG 2 cut(s) 551, 1430
Eco91I GGTNACC 1 cut(s) 72
EcoO65I GGTNACC 1 cut(s) 72
EcoRI GAATTC 2 cut(s) 401, 806
EcoRII CCWGG 3 cut(s) 335, 844, 1176
EcoT14I CCWWGG 2 cut(s) 54, 889
ErhI CCWWGG 2 cut(s) 54, 889
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 9 cut(s) 58, 147, 205, 370, 589, 799, 1114, 1163, 1292
FalI AAGNNNNNCTT 2 cut(s) 1290, 1322
FatI CATG 9 cut(s) 54, 143, 201, 366, 585, 795, 1110, 1159, 1288
FauI CCCGC 2 cut(s) 745, 922
FauNDI CATATG 1 cut(s) 1207
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 7 cut(s) 303, 341, 481, 700, 800, 989, 1168
FokI GGATG 4 cut(s) 461, 662, 1052, 1193
Fsp4HI GCNGC 7 cut(s) 303, 341, 481, 700, 800, 989, 1168
FspBI CTAG 5 cut(s) 42, 177, 344, 573, 734
GlaI GCGC 1 cut(s) 987
GluI GCNGC 7 cut(s) 303, 341, 481, 700, 800, 989, 1168
GsuI CTGGAG 1 cut(s) 828
HaeIII GGCC 4 cut(s) 214, 547, 632, 824
HapII CCGG 8 cut(s) 64, 215, 297, 383, 459, 918, 1107, 1303
HgaI GACGC 2 cut(s) 280, 1409
HhaI GCGC 1 cut(s) 988
Hin1I GRCGYC 1 cut(s) 1285
Hin1II CATG 9 cut(s) 58, 147, 205, 370, 589, 799, 1114, 1163, 1292
Hin6I GCGC 1 cut(s) 986
HinP1I GCGC 1 cut(s) 986
HindIII AAGCTT 3 cut(s) 233, 658, 1274
HinfI GANTC 7 cut(s) 130, 158, 730, 740, 1028, 1061, 1392
HpaII CCGG 8 cut(s) 64, 215, 297, 383, 459, 918, 1107, 1303
HphI GGTGA 5 cut(s) 296, 980, 1166, 1212, 1435
Hpy166II GTNNAC 5 cut(s) 287, 361, 637, 1048, 1426
Hpy188III TCNNGA 7 cut(s) 278, 625, 787, 1003, 1097, 1160, 1359
Hpy8I GTNNAC 5 cut(s) 287, 361, 637, 1048, 1426
Hpy99I CGWCG 2 cut(s) 28, 274
HpyAV CCTTC 2 cut(s) 1372, 1405
HpyCH4III ACNGT 8 cut(s) 284, 433, 641, 766, 784, 1151, 1430, 1460
HpyCH4IV ACGT 2 cut(s) 465, 1285
HpyCH4V TGCA 4 cut(s) 302, 488, 495, 758
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 696
HpyF3I CTNAG 4 cut(s) 156, 393, 1277, 1491
HpySE526I ACGT 2 cut(s) 465, 1285
Hsp92I GRCGYC 1 cut(s) 1285
Hsp92II CATG 9 cut(s) 58, 147, 205, 370, 589, 799, 1114, 1163, 1292
HspAI GCGC 1 cut(s) 986
Kzo9I GATC 8 cut(s) 83, 187, 621, 789, 954, 1212, 1236, 1405
LmnI GCTCC 3 cut(s) 56, 155, 932
Lsp1109I GCAGC 2 cut(s) 314, 352
LweI GCATC 1 cut(s) 482
MaeI CTAG 5 cut(s) 42, 177, 344, 573, 734
MaeII ACGT 2 cut(s) 465, 1285
MaeIII GTNAC 5 cut(s) 9, 72, 278, 461, 949
MalI GATC 8 cut(s) 85, 189, 623, 791, 956, 1214, 1238, 1407
MbiI CCGCTC 1 cut(s) 1167
MboI GATC 8 cut(s) 83, 187, 621, 789, 954, 1212, 1236, 1405
MflI RGATCY 2 cut(s) 83, 1212
MlyI GAGTC 3 cut(s) 124, 167, 1055
MmeI TCCRAC 1 cut(s) 1120
MseI TTAA 6 cut(s) 414, 645, 1308, 1373, 1454, 1470
MslI CAYNNNNRTG 1 cut(s) 1179
MspA1I CMGCKG 2 cut(s) 155, 1502
MspI CCGG 8 cut(s) 64, 215, 297, 383, 459, 918, 1107, 1303
MspR9I CCNGG 4 cut(s) 297, 337, 846, 1178
Mva1269I GAATGC 2 cut(s) 988, 1170
MvaI CCWGG 3 cut(s) 337, 846, 1178
MwoI GCNNNNNNNGC 2 cut(s) 179, 696
NciI CCSGG 1 cut(s) 297
NcoI CCATGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 1207
NdeII GATC 8 cut(s) 83, 187, 621, 789, 954, 1212, 1236, 1405
NheI GCTAGC 1 cut(s) 343
NlaIII CATG 9 cut(s) 58, 147, 205, 370, 589, 799, 1114, 1163, 1292
NmeAIII GCCGAG 1 cut(s) 573
NmuCI GTSAC 2 cut(s) 278, 949
NspI RCATGY 2 cut(s) 799, 1114
NspV TTCGAA 1 cut(s) 405
PagI TCATGA 1 cut(s) 1159
PcsI WCGNNNNNNNCGW 4 cut(s) 109, 429, 630, 816
PctI GAATGC 2 cut(s) 988, 1170
PfeI GAWTC 4 cut(s) 730, 740, 1028, 1392
PflFI GACNNNGTC 1 cut(s) 782
PflMI CCANNNNNTGG 2 cut(s) 1075, 1139
PinAI ACCGGT 1 cut(s) 458
PkrI GCNGC 7 cut(s) 304, 342, 482, 701, 801, 990, 1169
PleI GAGTC 3 cut(s) 124, 166, 1055
PpsI GAGTC 3 cut(s) 124, 166, 1055
Psp6I CCWGG 3 cut(s) 335, 844, 1176
PspEI GGTNACC 1 cut(s) 72
PspGI CCWGG 3 cut(s) 335, 844, 1176
PstNI CAGNNNCTG 2 cut(s) 851, 1403
PsuI RGATCY 2 cut(s) 83, 1212
PsyI GACNNNGTC 1 cut(s) 782
RsaI GTAC 3 cut(s) 221, 650, 1204
RsaNI GTAC 3 cut(s) 220, 649, 1203
RseI CAYNNNNRTG 1 cut(s) 1179
SaqAI TTAA 6 cut(s) 414, 645, 1308, 1373, 1454, 1470
SatI GCNGC 7 cut(s) 303, 341, 481, 700, 800, 989, 1168
Sau3AI GATC 8 cut(s) 83, 187, 621, 789, 954, 1212, 1236, 1405
SchI GAGTC 3 cut(s) 124, 167, 1055
ScrFI CCNGG 4 cut(s) 297, 337, 846, 1178
SfaNI GCATC 1 cut(s) 482
SfuI TTCGAA 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 1179
SpeI ACTAGT 2 cut(s) 176, 572
SspI AATATT 1 cut(s) 1188
SspMI CTAG 5 cut(s) 42, 177, 344, 573, 734
StyD4I CCNGG 4 cut(s) 295, 335, 844, 1176
StyI CCWWGG 2 cut(s) 54, 889
TaaI ACNGT 8 cut(s) 284, 433, 641, 766, 784, 1151, 1430, 1460
TaiI ACGT 2 cut(s) 468, 1288
TaqI TCGA 8 cut(s) 26, 405, 510, 624, 743, 945, 1021, 1198
TatI WGTACW 2 cut(s) 219, 1202
TauI GCSGC 5 cut(s) 483, 702, 802, 991, 1170
TfiI GAWTC 4 cut(s) 730, 740, 1028, 1392
Tru1I TTAA 6 cut(s) 414, 645, 1308, 1373, 1454, 1470
Tru9I TTAA 6 cut(s) 414, 645, 1308, 1373, 1454, 1470
TscAI CASTG 3 cut(s) 534, 646, 1336
TseFI GTSAC 2 cut(s) 278, 949
TseI GCWGC 2 cut(s) 302, 340
Tsp45I GTSAC 2 cut(s) 278, 949
TspDTI ATGAA 4 cut(s) 602, 863, 1148, 1338
TspGWI ACGGA 3 cut(s) 223, 722, 975
TspRI CASTG 3 cut(s) 534, 646, 1336
Tth111I GACNNNGTC 1 cut(s) 782
Van91I CCANNNNNTGG 2 cut(s) 1075, 1139
XapI RAATTY 5 cut(s) 401, 579, 806, 1252, 1340
XceI RCATGY 2 cut(s) 799, 1114
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 5 cut(s) 42, 177, 344, 573, 734
ZraI GACGTC 1 cut(s) 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.