Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026953

Physical Location & Seq

Genomic Coordinates Reverse (-)

9331565 .. 9333284

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGGAAGACATTCTTGTTGTTTTAAGCAGAAGCTAAGAAAAGGCCTTTGGTCTCCTGAAGAAGATGAGAAACTTCTCAATTACATCACTAGACATGGTCATGGCTGTTGGAGTTCTGTCCCTAAACTCGCAGGTTTGCAAAGATGTGGAAAGAGTTGTAGACTTAGGTGGATAAATTATTTGAGACCAGATTTAAAGAGAGGAGCTTTCTCTCAAGACGAAGAAAGCTTGATCATTGAGCTCCATGCTGCATTAGGCAACAGATGGTCTCAAATCGCAACGCGGTTACCGGGAAGAACAGACAACGAGATCAAAAACTTTTGGAACTCATGTCTTAAGAAGAAGCTGAGAAGAAAAGGCATTGACCCAACAACACATAAACCCTTAATAACAAACGAGCTTCAATCTCTTAACGTCATAGATCAGAAACTGACGTCATCAGAAGTAGTAAAGTCAACGGGTTCGATAAACAACCTACATGATCAGTCAATGGTCGTCTCATCGCAACAAGGTCCATGGTGGTTCCCGGCGAATACAACTACGACTAATCAAAACTCTGCGTTTTGCTTTAGTTCAAGTAATACTACAACGGTTTCAGACCAGATCGTATCTTTAATCTCTTCAATGTCTACGTCATCATCTCCGACACCAATGACTTCAAACTTCAGTCCTGCTCCAAACAACTGGGAACAACTCAACTACTGCAACACAGTACCAAGTCAGAGCAACAGTATCTACAGTGCCTTCTTTGGTAATCAATACACAGAAGCTAGCCAAACCATGAACAATAATAATCCACTAGTAGATCAACATCATCATCATCAAGACATGAAGTCATGGGCATCAGAGATTCTTCATTACACAGAACACAACCAAAGCTCAGAAACTGTTATAGAAGCAGAAGTGAAGCCAGACATTGCCAACTACTACTGGAGATCAGCATCATCATCGTCGTCACCAAACCAAGAAGCTGCAACATTACTACACGATGCTAACGTGGAAGTGTACGGTAAAAATCTACAAAAGCTTAATAACATGGTGTTTGATCAGAGCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010119 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

352

Amino Acids

39.79

Weight (kDa)

8.08

Isoelectric Point (pI)

58.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	36 - 81	3.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	39 - 92	1.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26660 AT5G26660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	160, 629
AccII	CGCG	1 cut(s)	283
AciI	CCGC	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	78, 649
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	2 cut(s)	714, 1007
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	404, 576, 624, 660
AhdI	GACNNNNNGTC	1 cut(s)	832
AhlI	ACTAGT	1 cut(s)	799
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	4 cut(s)	57, 178, 273, 502
AlwNI	CAGNNNCTG	2 cut(s)	430, 887
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	248, 971
Asp700I	GAANNNNTTC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	512
AsuC2I	CCSGG	2 cut(s)	291, 527
AsuHPI	GGTGA	1 cut(s)	948
AsuNHI	GCTAGC	1 cut(s)	770
AvaII	GGWCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	235, 958
BccI	CCATC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	930, 964
BclI	TGATCA	3 cut(s)	231, 481, 1045
BcnI	CCSGG	2 cut(s)	291, 527
BcoDI	GTCTC	4 cut(s)	57, 178, 273, 502
BcuI	ACTAGT	1 cut(s)	799
BfaI	CTAG	3 cut(s)	90, 771, 800
BfmI	CTRYAG	1 cut(s)	736
BfrI	CTTAAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	122
BisI	GCNGC	2 cut(s)	249, 972
BlsI	GCNGC	2 cut(s)	250, 973
Bme1390I	CCNGG	2 cut(s)	291, 527
Bme18I	GGWCC	1 cut(s)	512
BmeRI	GACNNNNNGTC	1 cut(s)	832
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	524
BmrFI	CCNGG	2 cut(s)	291, 527
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	3 cut(s)	851, 950, 979
BmtI	GCTAGC	1 cut(s)	774
BmuI	ACTGGG	1 cut(s)	694
BpiI	GAAGAC	1 cut(s)	13
BpmI	CTGGAG	1 cut(s)	952
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	2 cut(s)	291, 527
BsaBI	GATNNNNATC	2 cut(s)	810, 940
BsaHI	GRCGYC	1 cut(s)	434
BsaI	GGTCTC	3 cut(s)	57, 178, 273
BsaJI	CCNNGG	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	689, 935
Bse3DI	GCAATG	1 cut(s)	915
Bse8I	GATNNNNATC	2 cut(s)	810, 940
BseDI	CCNNGG	1 cut(s)	515
BseJI	GATNNNNATC	2 cut(s)	810, 940
BseMI	GCAATG	1 cut(s)	915
BseMII	CTCAG	2 cut(s)	338, 894
BseNI	ACTGG	2 cut(s)	689, 935
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	235, 958
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	290, 527
BslFI	GGGAC	1 cut(s)	104
BsmAI	GTCTC	4 cut(s)	57, 178, 273, 502
BsmBI	CGTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	45
Bso31I	GGTCTC	3 cut(s)	57, 178, 273
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	8 cut(s)	231, 309, 421, 481, 603, 805, 935, 1045
Bsp19I	CCATGG	1 cut(s)	515
BspACI	CCGC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	339, 893
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	524
BspMI	ACCTGC	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	774
BspTI	CTTAAG	1 cut(s)	335
BspTNI	GGTCTC	3 cut(s)	57, 178, 273
BsrDI	GCAATG	1 cut(s)	915
BsrI	ACTGG	2 cut(s)	689, 935
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	8 cut(s)	231, 309, 421, 481, 603, 805, 935, 1045
BssNI	GRCGYC	1 cut(s)	434
BssT1I	CCWWGG	1 cut(s)	515
Bst4CI	ACNGT	6 cut(s)	592, 712, 731, 740, 889, 1010
Bst6I	CTCTTC	1 cut(s)	625
BstACI	GRCGYC	1 cut(s)	434
BstAFI	CTTAAG	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	772
BstDEI	CTNAG	4 cut(s)	35, 164, 347, 880
BstDSI	CCRYGG	1 cut(s)	515
BstEII	GGTNACC	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	283
BstKTI	GATC	8 cut(s)	234, 312, 424, 484, 606, 808, 938, 1048
BstMAI	GTCTC	4 cut(s)	57, 178, 273, 502
BstMBI	GATC	8 cut(s)	231, 309, 421, 481, 603, 805, 935, 1045
BstPI	GGTNACC	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	289, 525
BstSFI	CTRYAG	1 cut(s)	736
BstUI	CGCG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	235, 958
BstV2I	GAAGAC	1 cut(s)	13
BstXI	CCANNNNNNTGG	1 cut(s)	684
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	515
BtgZI	GCGATG	1 cut(s)	486
BtsIMutI	CAGTG	1 cut(s)	745
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	772
CaiI	CAGNNNCTG	2 cut(s)	430, 887
Cfr13I	GGNCC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	713, 1006
CviQI	GTAC	2 cut(s)	713, 1006
DdeI	CTNAG	4 cut(s)	35, 164, 347, 880
DpnI	GATC	8 cut(s)	233, 311, 423, 483, 605, 807, 937, 1047
DpnII	GATC	8 cut(s)	231, 309, 421, 481, 603, 805, 935, 1045
DraI	TTTAAA	1 cut(s)	195
DriI	GACNNNNNGTC	1 cut(s)	832
Eam1104I	CTCTTC	1 cut(s)	625
Eam1105I	GACNNNNNGTC	1 cut(s)	832
EarI	CTCTTC	1 cut(s)	625
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	515
Eco147I	AGGCCT	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	3 cut(s)	57, 178, 273
Eco47I	GGWCC	1 cut(s)	512
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	78, 649
Eco91I	GGTNACC	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	515
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	515
Esp3I	CGTCTC	1 cut(s)	502
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	104
FbaI	TGATCA	3 cut(s)	231, 481, 1045
FblI	GTMKAC	2 cut(s)	160, 629
Fnu4HI	GCNGC	2 cut(s)	249, 972
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	249, 972
FspBI	CTAG	3 cut(s)	90, 771, 800
GluI	GCNGC	2 cut(s)	249, 972
GsuI	CTGGAG	1 cut(s)	952
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	2 cut(s)	290, 527
Hin1I	GRCGYC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HindIII	AAGCTT	2 cut(s)	226, 1025
HinfI	GANTC	1 cut(s)	850
HpaII	CCGG	2 cut(s)	290, 527
HphI	GGTGA	1 cut(s)	948
Hpy166II	GTNNAC	4 cut(s)	161, 456, 630, 1006
Hpy188I	TCNGA	8 cut(s)	426, 442, 598, 645, 723, 847, 883, 1050
Hpy188III	TCNNGA	3 cut(s)	56, 215, 824
Hpy8I	GTNNAC	4 cut(s)	161, 456, 630, 1006
Hpy99I	CGWCG	1 cut(s)	955
HpyAV	CCTTC	1 cut(s)	754
HpyCH4III	ACNGT	6 cut(s)	592, 712, 731, 740, 889, 1010
HpyCH4IV	ACGT	4 cut(s)	414, 434, 632, 996
HpyCH4V	TGCA	4 cut(s)	139, 251, 705, 974
HpyF3I	CTNAG	4 cut(s)	35, 164, 347, 880
HpySE526I	ACGT	4 cut(s)	414, 434, 632, 996
Hsp92I	GRCGYC	1 cut(s)	434
Ksp22I	TGATCA	3 cut(s)	231, 481, 1045
Kzo9I	GATC	8 cut(s)	231, 309, 421, 481, 603, 805, 935, 1045
LmnI	GCTCC	3 cut(s)	203, 246, 679
Lsp1109I	GCAGC	2 cut(s)	235, 958
LweI	GCATC	3 cut(s)	851, 950, 979
MaeI	CTAG	3 cut(s)	90, 771, 800
MaeII	ACGT	4 cut(s)	414, 434, 632, 996
MaeIII	GTNAC	2 cut(s)	285, 954
MalI	GATC	8 cut(s)	233, 311, 423, 483, 605, 807, 937, 1047
MboI	GATC	8 cut(s)	231, 309, 421, 481, 603, 805, 935, 1045
MboII	GAAGA	9 cut(s)	18, 71, 74, 233, 306, 352, 363, 612, 845
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	2 cut(s)	79, 175
MmeI	TCCRAC	2 cut(s)	89, 668
MnlI	CCTC	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	7 cut(s)	24, 194, 336, 386, 411, 614, 1029
MslI	CAYNNNNRTG	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	2 cut(s)	290, 527
MspR9I	CCNGG	2 cut(s)	291, 527
MvnI	CGCG	1 cut(s)	283
NciI	CCSGG	2 cut(s)	291, 527
NcoI	CCATGG	1 cut(s)	515
NdeII	GATC	8 cut(s)	231, 309, 421, 481, 603, 805, 935, 1045
NheI	GCTAGC	1 cut(s)	770
NlaIV	GGNNCC	1 cut(s)	524
NmuCI	GTSAC	1 cut(s)	954
PceI	AGGCCT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	993
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	850
PflFI	GACNNNGTC	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	250, 973
Psp124BI	GAGCTC	1 cut(s)	243
PspEI	GGTNACC	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	524
PspPI	GGNCC	1 cut(s)	512
PstNI	CAGNNNCTG	2 cut(s)	430, 887
PsyI	GACNNNGTC	1 cut(s)	96
RsaI	GTAC	2 cut(s)	714, 1007
RsaNI	GTAC	2 cut(s)	713, 1006
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	7 cut(s)	24, 194, 336, 386, 411, 614, 1029
SatI	GCNGC	2 cut(s)	249, 972
Sau3AI	GATC	8 cut(s)	231, 309, 421, 481, 603, 805, 935, 1045
Sau96I	GGNCC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	291, 527
SduI	GDGCHC	1 cut(s)	243
SfaNI	GCATC	3 cut(s)	851, 950, 979
SfcI	CTRYAG	1 cut(s)	736
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	213, 335
SmoI	CTYRAG	2 cut(s)	213, 335
SpeI	ACTAGT	1 cut(s)	799
Sse9I	AATT	2 cut(s)	79, 175
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	283
SspMI	CTAG	3 cut(s)	90, 771, 800
SstI	GAGCTC	1 cut(s)	243
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	289, 525
StyI	CCWWGG	1 cut(s)	515
TaaI	ACNGT	6 cut(s)	592, 712, 731, 740, 889, 1010
TaiI	ACGT	4 cut(s)	417, 437, 635, 999
TaqI	TCGA	1 cut(s)	464
TasI	AATT	2 cut(s)	79, 175
TfiI	GAWTC	1 cut(s)	850
Tru1I	TTAA	7 cut(s)	24, 194, 336, 386, 411, 614, 1029
Tru9I	TTAA	7 cut(s)	24, 194, 336, 386, 411, 614, 1029
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	1 cut(s)	954
TseI	GCWGC	2 cut(s)	248, 971
Tsp45I	GTSAC	1 cut(s)	954
TspDTI	ATGAA	3 cut(s)	797, 845, 845
TspRI	CASTG	1 cut(s)	745
Tth111I	GACNNNGTC	1 cut(s)	96
Vha464I	CTTAAG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	512
XmiI	GTMKAC	2 cut(s)	160, 629
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	3 cut(s)	90, 771, 800
ZraI	GACGTC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.