AT5G41680
NAC Family

Probably inactive receptor-like protein kinase At5g41680

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0027581
Physical Location & Seq
Forward (+)
16667769 .. 16669489
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41680.1

Sequence Viewer

Length: 1080 bp
ATGATGGCTTGTTGCTTGCGAAATAAACGGCGCATGAAAGGTAAACTCTCATGGAAGTCAAAGAAGAGAGATTTGTCTCATTCAGGAAACTGGGCACCAGAAGATGACAATGATGAAGGGAAAATCGTTTTCTTTGGAGGAAGTAACTATACCTTTGATTTGGATGATTTGTTAGCTGCATCTGCAGAAATTTTGGGGAAAGGCGCTCATGTTACAACCTACAAAGTAGCTGTGGAAGACACAGCCACGGTAGTAGTGAAGAGATTGGAGGAGGTGGTTGTTGGGAGAAGAGAGTTTGAGCAACAAATGGAGATCGTTGGTAGAATCAGGCATGATAATGTAGCCGAGCTTAAAGCCTACTACTATTCCAAGATCGATAAGCTCGCTGTTTACAGTTATTACAGTCAAGGAAACCTATTTGAGATGCTGCACGGTAAGCTATCTTTCTGTATTCCGTTGTCTATGCTTCTTTGGTATGCAGTATCGAAAACCAATAACTCAACTTTTGCAGGAGAGAGCCAAGTACCTTTAGATTGGGAGTCCCGTTTAAGAATCGCCATTGGTGCAGCAAGAGGGTTGGCTATAATCCACGAAGCAGACGACGGGAAGTTTGTCCACGGTAACATCAAATCCTCCAATATCTTCACGAACTCGAAATGCTACGGCTGCATCTGCGATCTCGGCTTAACACACATCACGAAATCTCTCCCGCAGACTACCTTACGTTCTTCGGGTTACCACGCACCTGAGATAACAGATACAAGAAAGTCCACACAGTTCTCTGATGTATACAGCTTCGGGGTGGTGTTACTCGAGCTTCTAACAGGGAAATCACCCGCGAGTCCGCTATCACTAGACGAAAACATGGACTTGGCGAGCTGGATAAGGTCAGTGGTGTCGAAAGAGTGGACAGGAGAAGTATTCGATAATGAGCTAATGATGCAAATGGGTATAGAAGAAGAGTTGGTTGAGATGTTGCAAATAGGTTTGGCTTGTGTTGCCTTAAAACCTCAAGATCGACCTCATATAACACACATTGTAAAATTGATACAAGACATTCCAACAAACTTCAATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

359

Amino Acids

40.29

Weight (kDa)

6.09

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 63 - 348 1.2e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 63 - 348 3.3e-22 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027581)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G41680 AT5G41680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 789
AccII CGCG 1 cut(s) 839
AciI CCGC 3 cut(s) 710, 837, 845
AcsI RAATTY 1 cut(s) 189
AfaI GTAC 1 cut(s) 525
AgsI TTSAA 1 cut(s) 1072
AluBI AGCT 9 cut(s) 176, 230, 349, 382, 439, 795, 817, 879, 934
AluI AGCT 9 cut(s) 176, 230, 349, 382, 439, 795, 817, 879, 934
Alw26I GTCTC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 812
ApeKI GCWGC 4 cut(s) 176, 427, 566, 666
ApoI RAATTY 1 cut(s) 189
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
AspLEI GCGC 2 cut(s) 33, 206
AsuHPI GGTGA 1 cut(s) 825
AvaI CYCGRG 1 cut(s) 812
BaeGI GKGCMC 1 cut(s) 97
BanI GGYRCC 1 cut(s) 94
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
BbsI GAAGAC 1 cut(s) 243
BbvI GCAGC 4 cut(s) 163, 414, 578, 653
BceAI ACGGC 2 cut(s) 44, 679
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 854
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 207
BisI GCNGC 4 cut(s) 177, 428, 567, 667
BlsI GCNGC 4 cut(s) 178, 429, 568, 668
BmeT110I CYCGRG 1 cut(s) 812
BmiI GGNNCC 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 4 cut(s) 188, 414, 678, 930
BmuI ACTGGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 996
Bsa29I ATCGAT 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 246, 616
Bse1I ACTGG 1 cut(s) 95
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 246, 616
BseGI GGATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 1 cut(s) 95
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 4 cut(s) 163, 414, 578, 653
BsgI GTGCAG 2 cut(s) 413, 585
Bsh1236I CGCG 1 cut(s) 839
BshNI GGYRCC 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 812
BslFI GGGAC 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 526
BsoBI CYCGRG 1 cut(s) 812
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 4 cut(s) 312, 372, 676, 1015
BspACI CCGC 3 cut(s) 710, 837, 845
BspCNI CTCAG 1 cut(s) 739
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 1 cut(s) 839
BspLI GGNNCC 1 cut(s) 96
BspMAI CTGCAG 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 246, 616
BssMI GATC 4 cut(s) 312, 372, 676, 1015
BssNAI GTATAC 1 cut(s) 790
Bst1107I GTATAC 1 cut(s) 790
Bst4CI ACNGT 6 cut(s) 250, 395, 404, 434, 620, 777
Bst6I CTCTTC 4 cut(s) 59, 254, 283, 954
BstC8I GCNNGC 3 cut(s) 17, 384, 877
BstDEI CTNAG 1 cut(s) 747
BstDSI CCRYGG 2 cut(s) 246, 616
BstEII GGTNACC 1 cut(s) 734
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 839
BstH2I RGCGCY 1 cut(s) 207
BstHHI GCGC 2 cut(s) 33, 206
BstKTI GATC 4 cut(s) 315, 375, 679, 1018
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 4 cut(s) 312, 372, 676, 1015
BstMWI GCNNNNNNNGC 8 cut(s) 182, 436, 563, 666, 672, 681, 940, 998
BstPI GGTNACC 1 cut(s) 734
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 97
BstUI CGCG 1 cut(s) 839
BstV1I GCAGC 4 cut(s) 163, 414, 578, 653
BstV2I GAAGAC 1 cut(s) 243
BstZ17I GTATAC 1 cut(s) 790
Bsu15I ATCGAT 1 cut(s) 375
BsuTUI ATCGAT 1 cut(s) 375
BtgI CCRYGG 2 cut(s) 246, 616
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 897
Cac8I GCNNGC 3 cut(s) 17, 384, 877
CfoI GCGC 2 cut(s) 33, 206
ClaI ATCGAT 1 cut(s) 375
Csp6I GTAC 1 cut(s) 524
CviAII CATG 5 cut(s) 34, 51, 209, 332, 865
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 1 cut(s) 747
DpnI GATC 4 cut(s) 314, 374, 678, 1017
DpnII GATC 4 cut(s) 312, 372, 676, 1015
Eam1104I CTCTTC 4 cut(s) 59, 254, 283, 954
EarI CTCTTC 4 cut(s) 59, 254, 283, 954
Eco88I CYCGRG 1 cut(s) 812
Eco91I GGTNACC 1 cut(s) 734
EcoO65I GGTNACC 1 cut(s) 734
FaeI CATG 5 cut(s) 37, 54, 212, 335, 868
FaqI GGGAC 1 cut(s) 526
FatI CATG 5 cut(s) 33, 50, 208, 331, 864
FauI CCCGC 2 cut(s) 717, 844
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 4 cut(s) 177, 428, 567, 667
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 4 cut(s) 177, 428, 567, 667
FspBI CTAG 1 cut(s) 854
GlaI GCGC 2 cut(s) 32, 205
GluI GCNGC 4 cut(s) 177, 428, 567, 667
HaeII RGCGCY 1 cut(s) 207
HhaI GCGC 2 cut(s) 33, 206
Hin1II CATG 5 cut(s) 37, 54, 212, 335, 868
Hin6I GCGC 2 cut(s) 31, 204
HinP1I GCGC 2 cut(s) 31, 204
HinfI GANTC 4 cut(s) 324, 539, 552, 841
HphI GGTGA 1 cut(s) 825
Hpy166II GTNNAC 6 cut(s) 44, 391, 616, 771, 790, 909
Hpy188I TCNGA 1 cut(s) 784
Hpy188III TCNNGA 4 cut(s) 84, 646, 697, 1013
Hpy8I GTNNAC 6 cut(s) 44, 391, 616, 771, 790, 909
Hpy99I CGWCG 1 cut(s) 605
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 6 cut(s) 250, 395, 404, 434, 620, 777
HpyCH4IV ACGT 1 cut(s) 724
HpyCH4V TGCA 9 cut(s) 179, 185, 430, 479, 509, 566, 669, 943, 979
HpyF10VI GCNNNNNNNGC 8 cut(s) 182, 436, 563, 666, 672, 681, 940, 998
HpyF3I CTNAG 1 cut(s) 747
HpySE526I ACGT 1 cut(s) 724
Hsp92II CATG 5 cut(s) 37, 54, 212, 335, 868
HspAI GCGC 2 cut(s) 31, 204
Kzo9I GATC 4 cut(s) 312, 372, 676, 1015
LpnPI CCDG 9 cut(s) 69, 76, 111, 313, 495, 759, 810, 865, 897
Lsp1109I GCAGC 4 cut(s) 163, 414, 578, 653
LweI GCATC 4 cut(s) 188, 414, 678, 930
MaeI CTAG 1 cut(s) 854
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 5 cut(s) 143, 211, 620, 734, 807
MalI GATC 4 cut(s) 314, 374, 678, 1017
MboI GATC 4 cut(s) 312, 372, 676, 1015
MboII GAAGA 9 cut(s) 76, 113, 248, 271, 300, 634, 720, 968, 971
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 189, 1043
MlyI GAGTC 2 cut(s) 548, 850
MnlI CCTC 7 cut(s) 131, 262, 265, 566, 643, 1020, 1032
MseI TTAA 5 cut(s) 351, 548, 686, 1004, 1078
MslI CAYNNNNRTG 1 cut(s) 336
MvnI CGCG 1 cut(s) 839
MwoI GCNNNNNNNGC 8 cut(s) 182, 436, 563, 666, 672, 681, 940, 998
NdeII GATC 4 cut(s) 312, 372, 676, 1015
NlaIII CATG 5 cut(s) 37, 54, 212, 335, 868
NlaIV GGNNCC 1 cut(s) 96
NmeAIII GCCGAG 2 cut(s) 370, 660
PaeR7I CTCGAG 1 cut(s) 812
PcsI WCGNNNNNNNCGW 1 cut(s) 597
PfeI GAWTC 2 cut(s) 324, 552
PkrI GCNGC 4 cut(s) 178, 429, 568, 668
PleI GAGTC 2 cut(s) 547, 849
PpsI GAGTC 2 cut(s) 547, 849
PspEI GGTNACC 1 cut(s) 734
PspN4I GGNNCC 1 cut(s) 96
PspXI VCTCGAGB 1 cut(s) 812
PstI CTGCAG 1 cut(s) 187
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 5 cut(s) 351, 548, 686, 1004, 1078
SatI GCNGC 4 cut(s) 177, 428, 567, 667
Sau3AI GATC 4 cut(s) 312, 372, 676, 1015
SchI GAGTC 2 cut(s) 548, 850
SduI GDGCHC 1 cut(s) 97
SfaNI GCATC 4 cut(s) 188, 414, 678, 930
SfcI CTRYAG 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 812
SlaI CTCGAG 1 cut(s) 812
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 812, 1011
SmoI CTYRAG 2 cut(s) 812, 1011
Sse9I AATT 2 cut(s) 189, 1043
SsiI CCGC 3 cut(s) 710, 837, 845
SspMI CTAG 1 cut(s) 854
TaaI ACNGT 6 cut(s) 250, 395, 404, 434, 620, 777
TaiI ACGT 1 cut(s) 727
TaqI TCGA 7 cut(s) 375, 485, 653, 813, 899, 924, 1018
TasI AATT 2 cut(s) 189, 1043
TfiI GAWTC 2 cut(s) 324, 552
Tru1I TTAA 5 cut(s) 351, 548, 686, 1004, 1078
Tru9I TTAA 5 cut(s) 351, 548, 686, 1004, 1078
TscAI CASTG 1 cut(s) 897
TseI GCWGC 4 cut(s) 176, 427, 566, 666
TspDTI ATGAA 2 cut(s) 50, 129
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 1 cut(s) 897
XapI RAATTY 1 cut(s) 189
XhoI CTCGAG 1 cut(s) 812
XmiI GTMKAC 1 cut(s) 789
XspI CTAG 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.