Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015457

Physical Location & Seq

Genomic Coordinates Forward (+)

16826542 .. 16829101

Gene Structure 2560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGATCTCTCTTCACGCTTCTCATCGATCCTTATCCTTCTCTTGATCTCCATCTCCATAGCTTCGGCTGAGATTCGTAAATCAGAGATCCGATCCGATGATCGTCCAATCATCCCTTTAGACGAATTCGGTTTCACTCACAGCGGTCGTCTTGAGCTTGACGCTTCCAAGATCTGGCTTTCCAACAGCAATCCCGATCTCGATCTCTCCAAAGTGGGCTTCTTTCTCTGCACTAGAGACGCTTGGGTTCATGTGATCCAACAGCTTGAAGAAGAAGAGATCACGTGCGCTCTACAATCAGATCTCGTTAAGCATGTGTTCACCTTCAACAATCTCAAGGGAGGAGATAAGAGCAGATTCTCCACCGTATTCACCGAGAACGATGCGGATCAGTACTCTCTCGTCTTCGCTAATTGTCTCCAACAGGTCAAAATCAGTATGGATGTTAGATCCGCTATGTATAACCTTGAAGGTAAAAAGGGAGGTCGTGATTATCTCTCTGCTGGAAGAACTGTTCTTCCTAAGGTCTATTTCTTATTCTCTGTTATCTATTTCTCTCTCGCCGCCACGTGGATCTACGTTCTCTATAAGAAACGTCTCACTGTTTTCGCAATCCATTTCTTCATGTTGGGAGTTGTTGTCTTGAAAGCTTTGAACCTTCTTTGTGAGGCTGAGGATAAGTCGTACATTAAGAAAACTGGAACTGCTCATGGTTGGGATGTCTTGTTCTACATTTTCAATTTCCTTAAGGGTATCACTCTTTTCACTTTGATCGTCTTGATCGGCACCGGTTGGTCTTTCTTGAAGCCCTACTTGCAGGACAAGGAAAAGAAGGTCTTGATGATTGTCATTCCTCTCCAGGTTGTCGCTAACTTTGCTCAGGTGGTTATCGATGAGACTGGACCGTATGGCCAAGATTGGGTCACGTGGAAACAGATCTTTTTGCTTGTTGATGTCGTCTGTTGCTGTGCTGTTCTGTTTCCCATTGTCTGGTCCATCAAAAACTTGCGTGAGGCGGCTAAGACTGACGGGAAGGCTGCTGTGAACCTCGTTAAGTTAACTCTGTTTAGGCAGTACTACATTGTGGTTATCTGCTACATCTACTTCACTCGTGTTGTTGTGTATGCACTGGAGACCATTACCTCTTACAAGTATATGTGGACTAGTGTTGTTGCCAGCGAGTTAGCCACACTTGCCTTCTATCTGTTTACTGGCTACAAGTTCAGGCCAGAGGTGCATAACCCGTACTTTGTTGTTGACGATGAGGAAGAAGAGGCTGCTGCTGAGGCTCTGAAGCTTGAAGACGAGTTTGAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0012505 GO:0016192 GO:0030135 GO:0030136 GO:0030276 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0032050 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0070013 GO:0072583 GO:0097708 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

439

Amino Acids

50.22

Weight (kDa)

5.67

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAND6-7_N	PF21904	29 - 155	1e-34	CAND6/7, N-terminal domain
GOST_TM	PF06814	174 - 414	6.4e-30	GOST, seven transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42090
fragaria_vesca	FvH4_5g10800
malus_domestica	MD06G1120800.v1.1 MD14G1137400.v1.1
prunus_persica	Prupe.5G131400_v2.0.a1
pyrus_communis	pycom06g11210 pycom14g11250
rosa_chinensis	RchiOBHm_Chr7g0187361
rosa_laevigata	RLG00000004791
rosa_multiflora	Rmu_sc0001758.1_g000010
rosa_roxburghii	Rroxscaffold_3G00267560
rosa_rugosa	Rorug06G0480900
rosa_samantha	Rh7BG077200 Rh7CG086400 Rh7DG087500
rosa_wichuraiana	Rw7G007510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	785
AccB7I	CCANNNNNTGG	2 cut(s)	174, 990
AciI	CCGC	5 cut(s)	144, 386, 453, 564, 1016
AclWI	GGATC	8 cut(s)	12, 22, 82, 87, 250, 396, 444, 581
AcoI	YGGCCR	1 cut(s)	910
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	1313
AcvI	CACGTG	3 cut(s)	285, 570, 927
AfaI	GTAC	4 cut(s)	395, 686, 1076, 1247
AfiI	CCNNNNNNNGG	4 cut(s)	174, 570, 919, 990
AflII	CTTAAG	1 cut(s)	746
AgeI	ACCGGT	1 cut(s)	788
AgsI	TTSAA	9 cut(s)	269, 328, 470, 646, 655, 739, 805, 1301, 1313
AhlI	ACTAGT	1 cut(s)	1163
AjnI	CCWGG	1 cut(s)	858
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AloI	GAACNNNNNNTCC	6 cut(s)	498, 502, 530, 534, 710, 742
AluBI	AGCT	5 cut(s)	62, 157, 265, 650, 1297
AluI	AGCT	5 cut(s)	62, 157, 265, 650, 1297
Alw26I	GTCTC	5 cut(s)	231, 422, 602, 890, 1127
AlwI	GGATC	8 cut(s)	12, 22, 82, 87, 250, 396, 444, 581
AoxI	GGCC	2 cut(s)	910, 1226
ApeKI	GCWGC	3 cut(s)	1037, 1277, 1280
ApoI	RAATTY	1 cut(s)	125
AsiGI	ACCGGT	1 cut(s)	788
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	902, 993
AsuHPI	GGTGA	2 cut(s)	313, 364
AvaII	GGWCC	2 cut(s)	902, 993
AxyI	CCTNAGG	1 cut(s)	522
BalI	TGGCCA	1 cut(s)	912
BanI	GGYRCC	1 cut(s)	785
BauI	CACGAG	1 cut(s)	1110
BbrPI	CACGTG	3 cut(s)	285, 570, 927
BbsI	GAAGAC	2 cut(s)	397, 1308
BbvCI	CCTCAGC	2 cut(s)	672, 1284
BbvI	GCAGC	3 cut(s)	1024, 1264, 1267
BccI	CCATC	2 cut(s)	59, 1004
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciT130I	CCWGG	1 cut(s)	860
BcoDI	GTCTC	5 cut(s)	231, 422, 602, 890, 1127
BcuI	ACTAGT	1 cut(s)	1163
BfaI	CTAG	2 cut(s)	234, 1164
BfrI	CTTAAG	1 cut(s)	746
BglII	AGATCT	3 cut(s)	171, 301, 936
BisI	GCNGC	5 cut(s)	564, 1017, 1038, 1278, 1281
BlsI	GCNGC	5 cut(s)	565, 1018, 1039, 1279, 1282
BmcAI	AGTACT	2 cut(s)	395, 1076
Bme1390I	CCNGG	1 cut(s)	860
Bme18I	GGWCC	2 cut(s)	902, 993
BmgT120I	GGNCC	2 cut(s)	902, 993
BmiI	GGNNCC	1 cut(s)	787
BmrFI	CCNGG	1 cut(s)	860
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	2 cut(s)	397, 1308
BpmI	CTGGAG	2 cut(s)	842, 1151
Bpu10I	CCTNAGC	3 cut(s)	672, 879, 1284
BpuEI	CTTGAG	2 cut(s)	173, 320
Bsa29I	ATCGAT	2 cut(s)	26, 891
BsaAI	YACGTR	3 cut(s)	285, 570, 927
BsaBI	GATNNNNATC	4 cut(s)	32, 50, 201, 387
BsaI	GGTCTC	1 cut(s)	1127
BsaWI	WCCGGW	1 cut(s)	788
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 570, 919, 990
Bse118I	RCCGGY	1 cut(s)	788
Bse1I	ACTGG	4 cut(s)	703, 904, 1134, 1216
Bse21I	CCTNAGG	1 cut(s)	522
Bse8I	GATNNNNATC	4 cut(s)	32, 50, 201, 387
BseBI	CCWGG	1 cut(s)	860
BseCI	ATCGAT	2 cut(s)	26, 891
BseGI	GGATG	3 cut(s)	111, 448, 724
BseJI	GATNNNNATC	4 cut(s)	32, 50, 201, 387
BseLI	CCNNNNNNNGG	4 cut(s)	174, 570, 919, 990
BseMII	CTCAG	4 cut(s)	60, 663, 893, 1275
BseNI	ACTGG	4 cut(s)	703, 904, 1134, 1216
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	1024, 1264, 1267
BsgI	GTGCAG	1 cut(s)	214
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	912, 1228
BshNI	GGYRCC	1 cut(s)	785
BshTI	ACCGGT	1 cut(s)	788
BshVI	ATCGAT	2 cut(s)	26, 891
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	789
BslI	CCNNNNNNNGG	4 cut(s)	174, 570, 919, 990
BsmAI	GTCTC	5 cut(s)	231, 422, 602, 890, 1127
BsmBI	CGTCTC	2 cut(s)	231, 602
BsnI	GGCC	2 cut(s)	912, 1228
Bso31I	GGTCTC	1 cut(s)	1127
BspACI	CCGC	5 cut(s)	144, 386, 453, 564, 1016
BspANI	GGCC	2 cut(s)	912, 1228
BspCNI	CTCAG	4 cut(s)	61, 664, 892, 1276
BspDI	ATCGAT	2 cut(s)	26, 891
BspLI	GGNNCC	1 cut(s)	787
BspPI	GGATC	8 cut(s)	12, 22, 82, 87, 250, 396, 444, 581
BspT107I	GGYRCC	1 cut(s)	785
BspTI	CTTAAG	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	1127
BsrFI	RCCGGY	1 cut(s)	788
BsrI	ACTGG	4 cut(s)	703, 904, 1134, 1216
BssAI	RCCGGY	1 cut(s)	788
BssSI	CACGAG	1 cut(s)	1110
Bst2BI	CACGAG	1 cut(s)	1110
Bst2UI	CCWGG	1 cut(s)	860
Bst4CI	ACNGT	4 cut(s)	367, 514, 604, 906
Bst6I	CTCTTC	3 cut(s)	16, 270, 1266
BstAFI	CTTAAG	1 cut(s)	746
BstBAI	YACGTR	3 cut(s)	285, 570, 927
BstC8I	GCNNGC	1 cut(s)	1177
BstDEI	CTNAG	6 cut(s)	69, 522, 672, 879, 1020, 1284
BstF5I	GGATG	3 cut(s)	111, 448, 724
BstHHI	GCGC	1 cut(s)	290
BstMAI	GTCTC	5 cut(s)	231, 422, 602, 890, 1127
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	5 cut(s)	814, 875, 1193, 1234, 1286
BstNI	CCWGG	1 cut(s)	860
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	858
BstV1I	GCAGC	3 cut(s)	1024, 1264, 1267
BstV2I	GAAGAC	2 cut(s)	397, 1308
BstX2I	RGATCY	7 cut(s)	4, 87, 171, 301, 449, 573, 936
BstYI	RGATCY	7 cut(s)	4, 87, 171, 301, 449, 573, 936
Bsu15I	ATCGAT	2 cut(s)	26, 891
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	912, 1228
BsuTUI	ATCGAT	2 cut(s)	26, 891
BtsCI	GGATG	3 cut(s)	111, 448, 724
BtsIMutI	CAGTG	2 cut(s)	600, 1127
Cac8I	GCNNGC	1 cut(s)	1177
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	788
Cfr13I	GGNCC	2 cut(s)	902, 993
ClaI	ATCGAT	2 cut(s)	26, 891
CseI	GACGC	2 cut(s)	170, 248
Csp6I	GTAC	4 cut(s)	394, 685, 1075, 1246
CspAI	ACCGGT	1 cut(s)	788
CviAII	CATG	4 cut(s)	251, 314, 625, 710
CviQI	GTAC	4 cut(s)	394, 685, 1075, 1246
DdeI	CTNAG	6 cut(s)	69, 522, 672, 879, 1020, 1284
EaeI	YGGCCR	1 cut(s)	910
Eam1104I	CTCTTC	3 cut(s)	16, 270, 1266
EarI	CTCTTC	3 cut(s)	16, 270, 1266
Eco31I	GGTCTC	1 cut(s)	1127
Eco47I	GGWCC	2 cut(s)	902, 993
Eco57I	CTGAAG	1 cut(s)	1313
Eco72I	CACGTG	3 cut(s)	285, 570, 927
Eco81I	CCTNAGG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	858
Esp3I	CGTCTC	2 cut(s)	231, 602
FaeI	CATG	4 cut(s)	254, 317, 628, 713
FalI	AAGNNNNNCTT	4 cut(s)	797, 829, 821, 853
FatI	CATG	4 cut(s)	250, 313, 624, 709
Fnu4HI	GCNGC	5 cut(s)	564, 1017, 1038, 1278, 1281
FokI	GGATG	3 cut(s)	98, 455, 731
Fsp4HI	GCNGC	5 cut(s)	564, 1017, 1038, 1278, 1281
FspBI	CTAG	2 cut(s)	234, 1164
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	5 cut(s)	564, 1017, 1038, 1278, 1281
GsuI	CTGGAG	2 cut(s)	842, 1151
HaeIII	GGCC	2 cut(s)	912, 1228
HapII	CCGG	1 cut(s)	789
HgaI	GACGC	2 cut(s)	170, 248
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	4 cut(s)	254, 317, 628, 713
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HincII	GTYRAC	2 cut(s)	1059, 1258
HindII	GTYRAC	2 cut(s)	1059, 1258
HindIII	AAGCTT	2 cut(s)	648, 1295
HinfI	GANTC	2 cut(s)	73, 357
HpaI	GTTAAC	1 cut(s)	1059
HpaII	CCGG	1 cut(s)	789
HphI	GGTGA	2 cut(s)	313, 364
Hpy166II	GTNNAC	6 cut(s)	321, 1045, 1059, 1161, 1209, 1258
Hpy188I	TCNGA	5 cut(s)	85, 92, 97, 301, 1293
Hpy188III	TCNNGA	9 cut(s)	43, 152, 194, 200, 488, 643, 778, 802, 838
Hpy8I	GTNNAC	6 cut(s)	321, 1045, 1059, 1161, 1209, 1258
HpyAV	CCTTC	7 cut(s)	47, 334, 464, 668, 826, 1027, 1207
HpyCH4III	ACNGT	4 cut(s)	367, 514, 604, 906
HpyCH4IV	ACGT	5 cut(s)	284, 569, 579, 595, 926
HpyCH4V	TGCA	4 cut(s)	231, 817, 1127, 1237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	814, 875, 1193, 1234, 1286
HpyF3I	CTNAG	6 cut(s)	69, 522, 672, 879, 1020, 1284
HpySE526I	ACGT	5 cut(s)	284, 569, 579, 595, 926
Hsp92II	CATG	4 cut(s)	254, 317, 628, 713
HspAI	GCGC	1 cut(s)	288
KspAI	GTTAAC	1 cut(s)	1059
Lsp1109I	GCAGC	3 cut(s)	1024, 1264, 1267
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	234, 1164
MaeII	ACGT	5 cut(s)	284, 569, 579, 595, 926
MaeIII	GTNAC	1 cut(s)	922
MflI	RGATCY	7 cut(s)	4, 87, 171, 301, 449, 573, 936
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	4 cut(s)	125, 412, 739, 1313
MluNI	TGGCCA	1 cut(s)	912
MmeI	TCCRAC	3 cut(s)	207, 283, 445
Mox20I	TGGCCA	1 cut(s)	912
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	5 cut(s)	309, 690, 747, 1053, 1058
Msp20I	TGGCCA	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	144
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	1 cut(s)	789
MspR9I	CCNGG	1 cut(s)	860
MvaI	CCWGG	1 cut(s)	860
MwoI	GCNNNNNNNGC	5 cut(s)	814, 875, 1193, 1234, 1286
NlaIII	CATG	4 cut(s)	254, 317, 628, 713
NlaIV	GGNNCC	1 cut(s)	787
NmuCI	GTSAC	1 cut(s)	922
NspI	RCATGY	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	73, 357
PflMI	CCANNNNNTGG	2 cut(s)	174, 990
PinAI	ACCGGT	1 cut(s)	788
PkrI	GCNGC	5 cut(s)	565, 1018, 1039, 1279, 1282
PmaCI	CACGTG	3 cut(s)	285, 570, 927
PmlI	CACGTG	3 cut(s)	285, 570, 927
Ppu21I	YACGTR	3 cut(s)	285, 570, 927
Psp6I	CCWGG	1 cut(s)	858
PspCI	CACGTG	3 cut(s)	285, 570, 927
PspGI	CCWGG	1 cut(s)	858
PspN4I	GGNNCC	1 cut(s)	787
PspPI	GGNCC	2 cut(s)	902, 993
PsuI	RGATCY	7 cut(s)	4, 87, 171, 301, 449, 573, 936
RsaI	GTAC	4 cut(s)	395, 686, 1076, 1247
RsaNI	GTAC	4 cut(s)	394, 685, 1075, 1246
SaqAI	TTAA	5 cut(s)	309, 690, 747, 1053, 1058
SatI	GCNGC	5 cut(s)	564, 1017, 1038, 1278, 1281
Sau96I	GGNCC	2 cut(s)	902, 993
ScaI	AGTACT	2 cut(s)	395, 1076
ScrFI	CCNGG	1 cut(s)	860
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	2 cut(s)	902, 993
SmlI	CTYRAG	3 cut(s)	152, 335, 746
SmoI	CTYRAG	3 cut(s)	152, 335, 746
SpeI	ACTAGT	1 cut(s)	1163
Sse9I	AATT	4 cut(s)	125, 412, 739, 1313
SsiI	CCGC	5 cut(s)	144, 386, 453, 564, 1016
SspMI	CTAG	2 cut(s)	234, 1164
StyD4I	CCNGG	1 cut(s)	858
TaaI	ACNGT	4 cut(s)	367, 514, 604, 906
TaiI	ACGT	5 cut(s)	287, 572, 582, 598, 929
TaqI	TCGA	3 cut(s)	26, 201, 891
TasI	AATT	4 cut(s)	125, 412, 739, 1313
TatI	WGTACW	2 cut(s)	393, 1074
TauI	GCSGC	2 cut(s)	566, 1019
TfiI	GAWTC	2 cut(s)	73, 357
Tru1I	TTAA	5 cut(s)	309, 690, 747, 1053, 1058
Tru9I	TTAA	5 cut(s)	309, 690, 747, 1053, 1058
TscAI	CASTG	2 cut(s)	607, 1134
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	3 cut(s)	1037, 1277, 1280
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	2 cut(s)	239, 613
TspRI	CASTG	2 cut(s)	607, 1134
Van91I	CCANNNNNTGG	2 cut(s)	174, 990
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	2 cut(s)	902, 993
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	2 cut(s)	234, 1164
ZrmI	AGTACT	2 cut(s)	395, 1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.