Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027370

Physical Location & Seq

Genomic Coordinates Forward (+)

20365722 .. 20367093

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCTGCCATGGTCTCGGCCTTGACACAGGTGGTTTCTGCTCGCTCTCAGACTGAGGCTGAAGGTGCTCACTCTTCTTCCTCTTCGGCTGGACATAAAAGAGGATGGCTTGGAATCGATTCTGCTCCTATTCCCTCATCATTTGCTCGTGTAGACTCTTCACATAATCCGATCGAAGAATCCATGAGCAAGGCATTTCCAGAGGAAGCAAGGGAGAAAAAAAGGAGGTACAGAGGAGTAAGGCAGAGACCATGGGGCAAATGGGCAGCTGAGATACGTGATCCACATAGAGCCGCTAGGGTTTGGCTCGGGACGTTTGATACAGCGGAGGCCGCGGCTAGAGCCTACGACGAGGCTGCACTCCGGTTCCGTGGAAATAAAGCAAAGCTAAATTTCCCAGAGGATGTAAGGATTCTTCCTCCTCCCCCTCCTCTTCTTCGTTCACCAGCTGACACGGTGGCGAATAAAGCAGAAGAGGATCTGATAAATTATTGGAGTTATACAAAGTTGTTGCAAAGTTCAGGCCAACGGTCATTTCTCGAGCGAGGACAAGAAGAGAGTAGTAACATATTTGAACATTCACCAATGGAACAACCTCTGCCTCCTTCAAGTTCTGGTCCAAGTTCCTCTAATTTTCCTGCACCTTCTCTACCTAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034284 GO:0040034 GO:0042221 GO:0043207 GO:0045893 GO:0045935 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

220

Amino Acids

24.26

Weight (kDa)

8.92

Isoelectric Point (pI)

80.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	85 - 134	4.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50080 AT5G50080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	335
AciI	CCGC	4 cut(s)	294, 326, 333, 335
AclWI	GGATC	2 cut(s)	275, 486
AcsI	RAATTY	1 cut(s)	391
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	575, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	3 cut(s)	269, 388, 449
AluI	AGCT	3 cut(s)	269, 388, 449
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	19, 241
AlwI	GGATC	2 cut(s)	275, 486
Ama87I	CYCGRG	2 cut(s)	308, 539
AoxI	GGCC	3 cut(s)	18, 330, 523
ApeKI	GCWGC	2 cut(s)	266, 356
ApoI	RAATTY	1 cut(s)	391
Asp700I	GAANNNNTTC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	617
AsuHPI	GGTGA	2 cut(s)	435, 573
AvaI	CYCGRG	2 cut(s)	308, 539
AvaII	GGWCC	1 cut(s)	617
BarI	GAAGNNNNNNTAC	2 cut(s)	399, 431
BauI	CACGAG	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	278, 343
BccI	CCATC	1 cut(s)	99
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BcoDI	GTCTC	2 cut(s)	19, 241
BfaI	CTAG	2 cut(s)	297, 339
BisI	GCNGC	5 cut(s)	267, 294, 333, 336, 357
BlsI	GCNGC	5 cut(s)	268, 295, 334, 337, 358
Bme18I	GGWCC	1 cut(s)	617
BmeT110I	CYCGRG	2 cut(s)	308, 539
BmgT120I	GGNCC	1 cut(s)	617
BmiI	GGNNCC	1 cut(s)	368
Bsa29I	ATCGAT	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	278
BsaI	GGTCTC	2 cut(s)	19, 241
BsaJI	CCNNGG	4 cut(s)	9, 251, 333, 370
BsaWI	WCCGGW	1 cut(s)	363
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	4 cut(s)	9, 251, 333, 370
BseGI	GGATG	2 cut(s)	110, 409
BseMII	CTCAG	3 cut(s)	45, 62, 261
BseRI	GAGGAG	3 cut(s)	249, 411, 420
BseXI	GCAGC	2 cut(s)	278, 343
BsgI	GTGCAG	2 cut(s)	342, 624
Bsh1236I	CGCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	20, 332, 525
BshVI	ATCGAT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	2 cut(s)	308, 539
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	19, 241
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	20, 332, 525
Bso31I	GGTCTC	2 cut(s)	19, 241
BsoBI	CYCGRG	2 cut(s)	308, 539
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	171, 280, 478
Bsp19I	CCATGG	2 cut(s)	9, 251
BspACI	CCGC	4 cut(s)	294, 326, 333, 335
BspANI	GGCC	3 cut(s)	20, 332, 525
BspCNI	CTCAG	3 cut(s)	46, 61, 262
BspDI	ATCGAT	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	275, 486
BspTNI	GGTCTC	2 cut(s)	19, 241
BssECI	CCNNGG	4 cut(s)	9, 251, 333, 370
BssMI	GATC	3 cut(s)	171, 280, 478
BssSI	CACGAG	1 cut(s)	147
BssT1I	CCWWGG	2 cut(s)	9, 251
Bst2BI	CACGAG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	457, 531
Bst6I	CTCTTC	6 cut(s)	79, 88, 163, 438, 468, 549
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	3 cut(s)	48, 54, 270
BstDSI	CCRYGG	4 cut(s)	9, 251, 333, 370
BstF5I	GGATG	2 cut(s)	110, 409
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	3 cut(s)	174, 283, 481
BstMAI	GTCTC	2 cut(s)	19, 241
BstMBI	GATC	3 cut(s)	171, 280, 478
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 332, 341, 467
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	2 cut(s)	278, 343
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	20, 332, 525
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	4 cut(s)	9, 251, 333, 370
BtsCI	GGATG	2 cut(s)	110, 409
Cac8I	GCNNGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	617
Cfr42I	CCGCGG	1 cut(s)	336
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	10, 184, 252
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	48, 54, 270
DpnI	GATC	3 cut(s)	173, 282, 480
DpnII	GATC	3 cut(s)	171, 280, 478
Eam1104I	CTCTTC	6 cut(s)	79, 88, 163, 438, 468, 549
EarI	CTCTTC	6 cut(s)	79, 88, 163, 438, 468, 549
Eco130I	CCWWGG	2 cut(s)	9, 251
Eco31I	GGTCTC	2 cut(s)	19, 241
Eco47I	GGWCC	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	81
Eco88I	CYCGRG	2 cut(s)	308, 539
EcoT14I	CCWWGG	2 cut(s)	9, 251
ErhI	CCWWGG	2 cut(s)	9, 251
FaeI	CATG	3 cut(s)	13, 187, 255
FaiI	YATR	9 cut(s)	11, 96, 165, 185, 253, 288, 501, 569, 661
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	3 cut(s)	9, 183, 251
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	5 cut(s)	267, 294, 333, 336, 357
FokI	GGATG	2 cut(s)	117, 416
Fsp4HI	GCNGC	5 cut(s)	267, 294, 333, 336, 357
FspBI	CTAG	2 cut(s)	297, 339
GluI	GCNGC	5 cut(s)	267, 294, 333, 336, 357
HaeIII	GGCC	3 cut(s)	20, 332, 525
HapII	CCGG	1 cut(s)	364
Hin1II	CATG	3 cut(s)	13, 187, 255
HinfI	GANTC	5 cut(s)	114, 119, 155, 179, 412
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	2 cut(s)	435, 573
Hpy166II	GTNNAC	2 cut(s)	154, 443
Hpy188I	TCNGA	3 cut(s)	51, 171, 483
Hpy188III	TCNNGA	3 cut(s)	200, 310, 539
Hpy8I	GTNNAC	2 cut(s)	154, 443
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	56, 615, 654
HpyCH4III	ACNGT	2 cut(s)	457, 531
HpyCH4IV	ACGT	2 cut(s)	277, 314
HpyCH4V	TGCA	3 cut(s)	359, 514, 641
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 332, 341, 467
HpyF3I	CTNAG	3 cut(s)	48, 54, 270
HpySE526I	ACGT	2 cut(s)	277, 314
Hsp92II	CATG	3 cut(s)	13, 187, 255
KspI	CCGCGG	1 cut(s)	336
Kzo9I	GATC	3 cut(s)	171, 280, 478
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	9 cut(s)	14, 75, 213, 377, 411, 459, 507, 600, 651
Lsp1109I	GCAGC	2 cut(s)	278, 343
MaeI	CTAG	2 cut(s)	297, 339
MaeII	ACGT	2 cut(s)	277, 314
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	3 cut(s)	173, 282, 480
MboI	GATC	3 cut(s)	171, 280, 478
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	3 cut(s)	391, 487, 631
MlyI	GAGTC	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	118
MspA1I	CMGCKG	4 cut(s)	269, 326, 335, 449
MspI	CCGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	4 cut(s)	65, 332, 341, 467
NcoI	CCATGG	2 cut(s)	9, 251
NdeII	GATC	3 cut(s)	171, 280, 478
NlaIII	CATG	3 cut(s)	13, 187, 255
NlaIV	GGNNCC	1 cut(s)	368
PaeR7I	CTCGAG	1 cut(s)	539
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	4 cut(s)	114, 119, 179, 412
PkrI	GCNGC	5 cut(s)	268, 295, 334, 337, 358
Ple19I	CGATCG	1 cut(s)	174
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	478
PvuI	CGATCG	1 cut(s)	174
PvuII	CAGCTG	2 cut(s)	269, 449
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SacII	CCGCGG	1 cut(s)	336
SatI	GCNGC	5 cut(s)	267, 294, 333, 336, 357
Sau3AI	GATC	3 cut(s)	171, 280, 478
Sau96I	GGNCC	1 cut(s)	617
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	70
Sfr274I	CTCGAG	1 cut(s)	539
Sfr303I	CCGCGG	1 cut(s)	336
SgrBI	CCGCGG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	617
SlaI	CTCGAG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	3 cut(s)	391, 487, 631
SsiI	CCGC	4 cut(s)	294, 326, 333, 335
SspMI	CTAG	2 cut(s)	297, 339
StyI	CCWWGG	2 cut(s)	9, 251
TaaI	ACNGT	2 cut(s)	457, 531
TaiI	ACGT	2 cut(s)	280, 317
TaqI	TCGA	3 cut(s)	117, 174, 540
TasI	AATT	3 cut(s)	391, 487, 631
TauI	GCSGC	3 cut(s)	296, 335, 338
TfiI	GAWTC	4 cut(s)	114, 119, 179, 412
TseI	GCWGC	2 cut(s)	266, 356
TspGWI	ACGGA	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	617
XapI	RAATTY	1 cut(s)	391
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	2 cut(s)	297, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.