Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0026932

Physical Location & Seq

Genomic Coordinates Forward (+)

20679222 .. 20680274

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGACATTTCTGCGCAGAGATTTGCCATGAACGGAAGAAGCATGAGACTCCCTCCCGGGTTTCGGTTCGATCCCGATGATGAAGATCTTGTGTTCGAGTATCTCGCCAAGAAGGTCCTCCACCGTCCAATGGACTTCGATCTCCCTGAGCTCCGTTCTTGCAATGTTGATCCATGGGACTTGCTAGGAGAGAAGAACAAGGAAGTGTATTACTTCGTGAAGAAGGAAGAGCGAGAGAGGAAGGGAAGAGAGACGTTATCCGGTTATTGGGAAGAGTGTGAAGAAGAGGAAGTAATGGAGGCTGGTGGTCGTGATTGTATTCATTTAGAAGGAAGGAGAAAGACATTTGCTTTCTTTATTGGAAAAAAACCTCGAGGGACAATAACTCCATGGATCATGTACGAGTTCCGACTTCTTTCCTCTAGAGCTACAAGGTGGTCATCGTCCCCTCTACCTCGGGGTGAGGTAGGAAAATGGAGGGCGGTGAAAGTCGTAGTGAAGGAAGAGAATGATGAAGAGATGGTGGAGGATGAGCACGAGTCTGACGAGTCTGATGGCGAGGAAGTTATTCAAAGCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010087 GO:0010089 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097305 GO:0099402 GO:0140110 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

193

Amino Acids

22.78

Weight (kDa)

4.97

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 89	4.6e-10	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50820 AT5G50820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	372
Acc16I	TGCGCA	1 cut(s)	15
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	3 cut(s)	65, 164, 401
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	3 cut(s)	63, 130, 267
AgsI	TTSAA	1 cut(s)	572
AluBI	AGCT	2 cut(s)	151, 428
AluI	AGCT	2 cut(s)	151, 428
Alw21I	GWGCWC	2 cut(s)	153, 537
Alw26I	GTCTC	2 cut(s)	40, 245
AlwI	GGATC	3 cut(s)	65, 164, 401
Ama87I	CYCGRG	3 cut(s)	56, 372, 456
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	2 cut(s)	57, 58
AsuHPI	GGTGA	2 cut(s)	473, 496
AvaI	CYCGRG	3 cut(s)	56, 372, 456
AvaII	GGWCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	536
Bbv12I	GWGCWC	2 cut(s)	153, 537
BccI	CCATC	2 cut(s)	514, 548
BcnI	CCSGG	2 cut(s)	57, 58
BcoDI	GTCTC	2 cut(s)	40, 245
BfaI	CTAG	2 cut(s)	185, 423
BglII	AGATCT	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	57, 58
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	3 cut(s)	56, 372, 456
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	57, 58
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
Bpu10I	CCTNAGC	1 cut(s)	147
BpuMI	CCSGG	2 cut(s)	57, 58
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	4 cut(s)	56, 173, 389, 455
BsaWI	WCCGGW	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 130, 267
Bse118I	RCCGGY	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	56, 173, 389, 455
BseGI	GGATG	1 cut(s)	535
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	3 cut(s)	63, 130, 267
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	153, 537
BsiHKCI	CYCGRG	3 cut(s)	56, 372, 456
BsiSI	CCGG	3 cut(s)	57, 261, 577
BslFI	GGGAC	3 cut(s)	191, 391, 430
BslI	CCNNNNNNNGG	3 cut(s)	63, 130, 267
BsmAI	GTCTC	2 cut(s)	40, 245
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	3 cut(s)	191, 391, 430
BsoBI	CYCGRG	3 cut(s)	56, 372, 456
Bsp1286I	GDGCHC	2 cut(s)	153, 537
Bsp143I	GATC	5 cut(s)	70, 85, 139, 169, 393
Bsp19I	CCATGG	2 cut(s)	173, 389
BspACI	CCGC	1 cut(s)	482
BspCNI	CTCAG	1 cut(s)	139
BspPI	GGATC	3 cut(s)	65, 164, 401
BspQI	GCTCTTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	576
BssAI	RCCGGY	1 cut(s)	576
BssECI	CCNNGG	4 cut(s)	56, 173, 389, 455
BssMI	GATC	5 cut(s)	70, 85, 139, 169, 393
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	2 cut(s)	173, 389
Bst2BI	CACGAG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	6 cut(s)	222, 241, 267, 279, 498, 510
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	2 cut(s)	173, 389
BstF5I	GGATG	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	5 cut(s)	73, 88, 142, 172, 396
BstMAI	GTCTC	2 cut(s)	40, 245
BstMBI	GATC	5 cut(s)	70, 85, 139, 169, 393
BstSCI	CCNGG	2 cut(s)	55, 56
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtgI	CCRYGG	2 cut(s)	173, 389
BtsCI	GGATG	1 cut(s)	535
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	576
Cfr13I	GGNCC	1 cut(s)	115
Cfr9I	CCCGGG	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	5 cut(s)	28, 43, 174, 390, 397
CviJI	RGCY	4 cut(s)	151, 302, 428, 576
CviKI_1	RGCY	4 cut(s)	151, 302, 428, 576
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	5 cut(s)	72, 87, 141, 171, 395
DpnII	GATC	5 cut(s)	70, 85, 139, 169, 393
Eam1104I	CTCTTC	6 cut(s)	222, 241, 267, 279, 498, 510
EarI	CTCTTC	6 cut(s)	222, 241, 267, 279, 498, 510
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	173, 389
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	3 cut(s)	56, 372, 456
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	115
EcoT14I	CCWWGG	2 cut(s)	173, 389
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	2 cut(s)	173, 389
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	5 cut(s)	31, 46, 177, 393, 400
FaiI	YATR	5 cut(s)	29, 44, 175, 391, 398
FaqI	GGGAC	3 cut(s)	191, 391, 430
FatI	CATG	5 cut(s)	27, 42, 173, 389, 396
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	1 cut(s)	153
FspBI	CTAG	2 cut(s)	185, 423
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	1 cut(s)	15
HapII	CCGG	3 cut(s)	57, 261, 577
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	5 cut(s)	31, 46, 177, 393, 400
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	3 cut(s)	48, 539, 548
HpaII	CCGG	3 cut(s)	57, 261, 577
HphI	GGTGA	2 cut(s)	473, 496
Hpy188I	TCNGA	3 cut(s)	410, 544, 553
Hpy188III	TCNNGA	4 cut(s)	74, 217, 311, 423
HpyAV	CCTTC	6 cut(s)	106, 217, 235, 323, 327, 493
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	5 cut(s)	31, 46, 177, 393, 400
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	5 cut(s)	70, 85, 139, 169, 393
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	4 cut(s)	70, 159, 274, 288
MaeI	CTAG	2 cut(s)	185, 423
MaeII	ACGT	1 cut(s)	254
MalI	GATC	5 cut(s)	72, 87, 141, 171, 395
MboI	GATC	5 cut(s)	70, 85, 139, 169, 393
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	2 cut(s)	153, 537
MlyI	GAGTC	3 cut(s)	42, 548, 557
MmeI	TCCRAC	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	567
MspI	CCGG	3 cut(s)	57, 261, 577
MspR9I	CCNGG	2 cut(s)	57, 58
NciI	CCSGG	2 cut(s)	57, 58
NcoI	CCATGG	2 cut(s)	173, 389
NdeII	GATC	5 cut(s)	70, 85, 139, 169, 393
NlaIII	CATG	5 cut(s)	31, 46, 177, 393, 400
NsbI	TGCGCA	1 cut(s)	15
PaeR7I	CTCGAG	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	567
PleI	GAGTC	3 cut(s)	42, 547, 556
PpsI	GAGTC	3 cut(s)	42, 547, 556
PpuMI	RGGWCCY	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	115
PspPPI	RGGWCCY	1 cut(s)	115
PspXI	VCTCGAGB	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	222
Sau3AI	GATC	5 cut(s)	70, 85, 139, 169, 393
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	3 cut(s)	42, 548, 557
ScrFI	CCNGG	2 cut(s)	57, 58
SduI	GDGCHC	2 cut(s)	153, 537
SetI	ASST	8 cut(s)	117, 153, 257, 373, 430, 437, 457, 468
Sfr274I	CTCGAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	372
SmaI	CCCGGG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
SsiI	CCGC	1 cut(s)	482
SspMI	CTAG	2 cut(s)	185, 423
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	55, 56
StyI	CCWWGG	2 cut(s)	173, 389
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	4 cut(s)	69, 96, 138, 373
TspDTI	ATGAA	4 cut(s)	44, 96, 311, 528
TspGWI	ACGGA	2 cut(s)	48, 143
TspMI	CCCGGG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	372
XmaI	CCCGGG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	185, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.