Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0027476

Physical Location & Seq

Genomic Coordinates Reverse (-)

21860860 .. 21865150

Gene Structure 4291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53850.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCGGTGGCTGCAGCGGCGATGATCGGGTTGCCACAGGCGTATCTGGAAGGGAAGGAGGTGAAGGAGACGAGTTCGTTGGTTACTGAACTCTGCCGTCACTTTTATACTCAAGGTTGGGTGTCTGGCACTGGCGGTAGCATAACGATGAAAGTTCATGATGCTTCGATTCCTAAACCGGAGCAACTTATCGTCATGTCTCCTTCAGGTGTTCAAAAGGAGAGGATGCAACCTGAGGATATGTACATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGGCATATGAGATGCGAAATGCTGGAGCTGTTATTCACAGTCATGGCATGGAATCTTGTCTTGTGACGATGCTGAATCCGCAAGCCAAAGAATTCCGTATAACTCACATGGAGATGATAAAAGGGATTCAAGGTCACGGATACTATGATGAACTTGTTGTCCCAATCATAGAGAACACAGCATATGAGAATGAACTAACAGATTCACTTACCAAAGCTATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGCAATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAGGCTGAATGTTACCATTATCTGTTCGATGCTGCCATTAAGCTTCATCAACTGGGTCTGGATGCTGCTACCCCAGACCACGGGCCTATCCGGAGAACCATACATTCACAGATCAAGGATTCACAATACGAAAGAGAATGGCCTCGGCGATGGATTGTCCTCGACATTGAAGGAACAACTACGCCCATTACTTTCGTCACAGATGTTCTCTTTCCTTATGCTCGTGAAAACGTTGGAAAGCACCTGAATTTGACATATCACACAGCAGAAACCCAAGAGGATATTAAGTTGTTGCGGGCTCAAGTTGAGGAAGACTTGAGAGAGGGTGTAACCGGCGCTGTTCCTATCCCTCATGCTGATGAAGGAAAAGAAAAGGTGATTGCCGCTATGGTCTCAAACGTAGAGGCAATGATAAGAGCTGATAGAAAGATCACTGCTTTAAAGGAATTGCAGGGTCACATATGGCGAACAGGTTTTGAGTGTGATGAACTGAAAGCTATTGTTTTTGAGGATGTAGCAGATGCTTTAGAGAAATGGCATTCTTCAGGAATTAAGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

Aldolase_II Hydrolase

Protein Analysis

402

Amino Acids

45.02

Weight (kDa)

5.87

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldolase_II	PF00596	37 - 147	1.3e-15	Class II Aldolase and Adducin N-terminal domain
Hydrolase	PF00702	187 - 398	4e-12	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53850 AT5G53850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	738
AciI	CCGC	7 cut(s)	5, 17, 135, 422, 943, 1032, 1204
AclI	AACGTT	1 cut(s)	879
AclWI	GGATC	4 cut(s)	258, 271, 628, 641
AcsI	RAATTY	2 cut(s)	434, 895
AcuI	CTGAAG	2 cut(s)	189, 1176
AfaI	GTAC	3 cut(s)	245, 319, 597
AfiI	CCNNNNNNNGG	1 cut(s)	728
AgsI	TTSAA	3 cut(s)	215, 473, 818
AloI	GAACNNNNNNTCC	2 cut(s)	486, 518
AluBI	AGCT	5 cut(s)	371, 560, 691, 1067, 1145
AluI	AGCT	5 cut(s)	371, 560, 691, 1067, 1145
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	3 cut(s)	62, 204, 1045
AlwI	GGATC	4 cut(s)	258, 271, 628, 641
Aor13HI	TCCGGA	1 cut(s)	738
AoxI	GGCC	2 cut(s)	731, 788
ApeKI	GCWGC	4 cut(s)	11, 14, 680, 713
ApoI	RAATTY	2 cut(s)	434, 895
AspLEI	GCGC	1 cut(s)	986
AspS9I	GGNCC	1 cut(s)	731
AsuHPI	GGTGA	3 cut(s)	73, 635, 1036
AxyI	CCTNAGG	1 cut(s)	234
BaeI	ACNNNNGTAYC	2 cut(s)	26, 59
BamHI	GGATCC	2 cut(s)	263, 633
BanII	GRGCYC	1 cut(s)	949
BauI	CACGAG	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	966
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	3 cut(s)	26, 667, 700
BccI	CCATC	2 cut(s)	275, 792
BceAI	ACGGC	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	476
BcoDI	GTCTC	3 cut(s)	62, 204, 1045
BfmI	CTRYAG	2 cut(s)	12, 561
BfoI	RGCGCY	1 cut(s)	987
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	6 cut(s)	12, 15, 18, 681, 714, 1032
BlsI	GCNGC	6 cut(s)	13, 16, 19, 682, 715, 1033
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	2 cut(s)	265, 635
BmrI	ACTGGG	1 cut(s)	710
BmsI	GCATC	7 cut(s)	151, 216, 345, 402, 667, 700, 1159
BmuI	ACTGGG	1 cut(s)	710
BpiI	GAAGAC	1 cut(s)	966
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	3 cut(s)	96, 933, 985
BsaI	GGTCTC	1 cut(s)	1045
BsaJI	CCNNGG	2 cut(s)	727, 791
BsaWI	WCCGGW	2 cut(s)	178, 738
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse118I	RCCGGY	1 cut(s)	980
Bse1I	ACTGG	2 cut(s)	136, 705
Bse21I	CCTNAGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	1062
BseAI	TCCGGA	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	727, 791
BseGI	GGATG	3 cut(s)	231, 715, 1165
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseMI	GCAATG	1 cut(s)	1062
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	136, 705
BseXI	GCAGC	3 cut(s)	26, 667, 700
BshFI	GGCC	2 cut(s)	733, 790
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	179, 739, 981
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	3 cut(s)	62, 204, 1045
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	1186
BsnI	GGCC	2 cut(s)	733, 790
Bso31I	GGTCTC	1 cut(s)	1045
Bsp1286I	GDGCHC	2 cut(s)	331, 949
Bsp13I	TCCGGA	1 cut(s)	738
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	5 cut(s)	24, 263, 633, 759, 1077
BspACI	CCGC	7 cut(s)	5, 17, 135, 422, 943, 1032, 1204
BspANI	GGCC	2 cut(s)	733, 790
BspCNI	CTCAG	1 cut(s)	226
BspEI	TCCGGA	1 cut(s)	738
BspHI	TCATGA	2 cut(s)	157, 339
BspLI	GGNNCC	2 cut(s)	265, 635
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	4 cut(s)	258, 271, 628, 641
BspTNI	GGTCTC	1 cut(s)	1045
BsrDI	GCAATG	1 cut(s)	1062
BsrFI	RCCGGY	1 cut(s)	980
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	136, 705
BssAI	RCCGGY	1 cut(s)	980
BssECI	CCNNGG	2 cut(s)	727, 791
BssMI	GATC	5 cut(s)	24, 263, 633, 759, 1077
BssSI	CACGAG	1 cut(s)	870
Bst2BI	CACGAG	1 cut(s)	870
Bst4CI	ACNGT	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	426, 945
BstDEI	CTNAG	2 cut(s)	234, 642
BstDSI	CCRYGG	1 cut(s)	727
BstF5I	GGATG	3 cut(s)	231, 715, 1165
BstH2I	RGCGCY	1 cut(s)	987
BstHHI	GCGC	1 cut(s)	986
BstKTI	GATC	5 cut(s)	27, 266, 636, 762, 1080
BstMAI	GTCTC	3 cut(s)	62, 204, 1045
BstMBI	GATC	5 cut(s)	24, 263, 633, 759, 1077
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 17, 421, 566
BstSFI	CTRYAG	2 cut(s)	12, 561
BstV1I	GCAGC	3 cut(s)	26, 667, 700
BstV2I	GAAGAC	1 cut(s)	966
BstX2I	RGATCY	2 cut(s)	263, 633
BstYI	RGATCY	2 cut(s)	263, 633
Bsu36I	CCTNAGG	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	733, 790
BtgI	CCRYGG	1 cut(s)	727
BtgZI	GCGATG	2 cut(s)	35, 811
BtsCI	GGATG	3 cut(s)	231, 715, 1165
BtsI	GCAGTG	2 cut(s)	594, 1080
BtsIMutI	CAGTG	3 cut(s)	129, 594, 1080
Cac8I	GCNNGC	2 cut(s)	426, 945
CciI	TCATGA	2 cut(s)	157, 339
CfoI	GCGC	1 cut(s)	986
Cfr10I	RCCGGY	1 cut(s)	980
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	3 cut(s)	244, 318, 596
CviAII	CATG	8 cut(s)	158, 196, 340, 386, 391, 451, 638, 1001
CviQI	GTAC	3 cut(s)	244, 318, 596
DdeI	CTNAG	2 cut(s)	234, 642
DpnI	GATC	5 cut(s)	26, 265, 635, 761, 1079
DpnII	GATC	5 cut(s)	24, 263, 633, 759, 1077
DraI	TTTAAA	1 cut(s)	1089
Eco24I	GRGCYC	1 cut(s)	949
Eco31I	GGTCTC	1 cut(s)	1045
Eco57I	CTGAAG	2 cut(s)	189, 1176
Eco81I	CCTNAGG	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	949
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	8 cut(s)	161, 199, 343, 389, 394, 454, 641, 1004
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	8 cut(s)	157, 195, 339, 385, 390, 450, 637, 1000
FauI	CCCGC	1 cut(s)	936
FauNDI	CATATG	3 cut(s)	349, 526, 1109
Fnu4HI	GCNGC	6 cut(s)	12, 15, 18, 681, 714, 1032
FokI	GGATG	3 cut(s)	238, 722, 1172
FriOI	GRGCYC	1 cut(s)	949
Fsp4HI	GCNGC	6 cut(s)	12, 15, 18, 681, 714, 1032
GlaI	GCGC	1 cut(s)	985
GluI	GCNGC	6 cut(s)	12, 15, 18, 681, 714, 1032
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	987
HaeIII	GGCC	2 cut(s)	733, 790
HapII	CCGG	3 cut(s)	179, 739, 981
HhaI	GCGC	1 cut(s)	986
Hin1II	CATG	8 cut(s)	161, 199, 343, 389, 394, 454, 641, 1004
Hin6I	GCGC	1 cut(s)	984
HinP1I	GCGC	1 cut(s)	984
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	7 cut(s)	169, 395, 418, 469, 545, 626, 767
HpaII	CCGG	3 cut(s)	179, 739, 981
HphI	GGTGA	3 cut(s)	73, 635, 1036
Hpy166II	GTNNAC	2 cut(s)	318, 613
Hpy188III	TCNNGA	7 cut(s)	47, 158, 340, 707, 739, 872, 1194
Hpy8I	GTNNAC	2 cut(s)	318, 613
HpyAV	CCTTC	7 cut(s)	44, 49, 58, 213, 337, 812, 1004
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	2 cut(s)	879, 1047
HpyCH4V	TGCA	3 cut(s)	14, 229, 1099
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 17, 421, 566
HpyF3I	CTNAG	2 cut(s)	234, 642
HpySE526I	ACGT	2 cut(s)	879, 1047
Hsp92II	CATG	8 cut(s)	161, 199, 343, 389, 394, 454, 641, 1004
HspAI	GCGC	1 cut(s)	984
Kpn2I	TCCGGA	1 cut(s)	738
Kzo9I	GATC	5 cut(s)	24, 263, 633, 759, 1077
LmnI	GCTCC	3 cut(s)	181, 334, 368
Lsp1109I	GCAGC	3 cut(s)	26, 667, 700
LweI	GCATC	7 cut(s)	151, 216, 345, 402, 667, 700, 1159
MaeII	ACGT	2 cut(s)	879, 1047
MaeIII	GTNAC	8 cut(s)	82, 98, 406, 476, 659, 844, 976, 1103
MalI	GATC	5 cut(s)	26, 265, 635, 761, 1079
MboI	GATC	5 cut(s)	24, 263, 633, 759, 1077
MboII	GAAGA	2 cut(s)	971, 1182
MflI	RGATCY	2 cut(s)	263, 633
MhlI	GDGCHC	2 cut(s)	331, 949
MluCI	AATT	4 cut(s)	434, 895, 1094, 1197
MmeI	TCCRAC	1 cut(s)	862
MroI	TCCGGA	1 cut(s)	738
MseI	TTAA	4 cut(s)	687, 933, 1088, 1200
MslI	CAYNNNNRTG	4 cut(s)	146, 384, 455, 1005
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	3 cut(s)	179, 739, 981
Mva1269I	GAATGC	1 cut(s)	1186
MwoI	GCNNNNNNNGC	4 cut(s)	11, 17, 421, 566
NdeI	CATATG	3 cut(s)	349, 526, 1109
NdeII	GATC	5 cut(s)	24, 263, 633, 759, 1077
NlaIII	CATG	8 cut(s)	161, 199, 343, 389, 394, 454, 641, 1004
NlaIV	GGNNCC	2 cut(s)	265, 635
NmeAIII	GCCGAG	1 cut(s)	772
NmuCI	GTSAC	5 cut(s)	98, 406, 476, 844, 1103
PagI	TCATGA	2 cut(s)	157, 339
PctI	GAATGC	1 cut(s)	1186
PfeI	GAWTC	7 cut(s)	169, 395, 418, 469, 545, 626, 767
PkrI	GCNGC	6 cut(s)	13, 16, 19, 682, 715, 1033
Psp1406I	AACGTT	1 cut(s)	879
PspN4I	GGNNCC	2 cut(s)	265, 635
PspPI	GGNCC	1 cut(s)	731
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	263, 633
RsaI	GTAC	3 cut(s)	245, 319, 597
RsaNI	GTAC	3 cut(s)	244, 318, 596
RseI	CAYNNNNRTG	4 cut(s)	146, 384, 455, 1005
SaqAI	TTAA	4 cut(s)	687, 933, 1088, 1200
SatI	GCNGC	6 cut(s)	12, 15, 18, 681, 714, 1032
Sau3AI	GATC	5 cut(s)	24, 263, 633, 759, 1077
Sau96I	GGNCC	1 cut(s)	731
SduI	GDGCHC	2 cut(s)	331, 949
SfaNI	GCATC	7 cut(s)	151, 216, 345, 402, 667, 700, 1159
SfcI	CTRYAG	2 cut(s)	12, 561
SmiMI	CAYNNNNRTG	4 cut(s)	146, 384, 455, 1005
SmlI	CTYRAG	3 cut(s)	111, 948, 964
SmoI	CTYRAG	3 cut(s)	111, 948, 964
Sse9I	AATT	4 cut(s)	434, 895, 1094, 1197
SsiI	CCGC	7 cut(s)	5, 17, 135, 422, 943, 1032, 1204
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	2 cut(s)	882, 1050
TaqI	TCGA	3 cut(s)	167, 675, 810
TasI	AATT	4 cut(s)	434, 895, 1094, 1197
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	2 cut(s)	20, 1034
TfiI	GAWTC	7 cut(s)	169, 395, 418, 469, 545, 626, 767
Tru1I	TTAA	4 cut(s)	687, 933, 1088, 1200
Tru9I	TTAA	4 cut(s)	687, 933, 1088, 1200
TscAI	CASTG	3 cut(s)	136, 594, 1087
TseFI	GTSAC	5 cut(s)	98, 406, 476, 844, 1103
TseI	GCWGC	4 cut(s)	11, 14, 680, 713
Tsp45I	GTSAC	5 cut(s)	98, 406, 476, 844, 1103
TspDTI	ATGAA	9 cut(s)	146, 164, 328, 356, 507, 549, 683, 1023, 1149
TspGWI	ACGGA	3 cut(s)	428, 495, 621
TspRI	CASTG	3 cut(s)	136, 594, 1087
XapI	RAATTY	2 cut(s)	434, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.