Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0023846

Physical Location & Seq

Genomic Coordinates Reverse (-)

22917934 .. 22921499

Gene Structure 3566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAGAATAGTAAATGTAACCTCATAGATTCAAAGCTCGAAGAACATCATCATCTTTGCGGATCAAAACATTGTCCTGGATGTGGTCGCATGATTCAAGCTGCTACTAAACCAAATTGGGTTGGATTGCCGGCAGGAGTGAAATTCGATCCGACAGATCAAGAACTTATAGAACATTTAGAAGCAAAAGTGAAGGGAAAAGAAGAAAATAAGAAATGGTCGTCGTCTCATCCACTTATAGATGAATTTATTCCCACCATTGATGGAGAAGATGGAATATGTTACACTCATCCTCAGAAGCTTCCAGGGGTGACAAGAGATGGCTTGAGCAAACACTTCTTCCACAAACCATCAAGAGCTTACACAACCGGAACAAGAAAACGACGTAAAATAATTCAAACCGATCACGACTCTGAGTTAACCGGATCATCAGAAACCAGGTGGCACAAAACGGGCAAAACAAGACCGGTTATGATCAACGGTCAACAAAGAGGATGCAAGAAGATATTAGTACTCTACACAAACTTCGGCAAGAATCGTCGACCGGAGAAAACAAATTGGGTGATGCATCAATATCATTTAGGGATTAATGAGGAAGAGAGAGAAGGAGAACTTGTGGTCTCCAAGATATTTTATCAGACACAACCAAGACAGTGTGTTAGTAATACTAATTGGTCTGATCACCATGGTTCCAAGGACGTGATCGGAATTGGTGTCGGAGATGAGATTTCCAGCGTAGCTGCCACGTTGCAGAGTCTTGGCTCCGGTGACGTCGTTTCTAGGGTTAATATGCATCCCCATACAAGATCCTTTGATGAGGGGACAGCCGAAGCTTCAAAGGGAAGAGAGAACCAGCATGTGTCTGGCACGTGCGAGGAAGTACATGATGGGATCATAACATCATCAATGTCATCTCATCATATGATTCATGATCATCATAATCAACATCATCAAATCGGAGATAGAAGAGAATTTCACATGTCATCATCATATCCCATGACCCCTACTATCACATCACAACATGAGTCAATCTTCCATGTTACAAGTACTATGCCCTTTCAGGGGTCGGTCGTCTGGTTCGGGATTAGAAGACCTAATTATGGGTTGTACCACAGCTACGTGTACAGAAGACGTAAGTTTCTAACGAATTTGTGTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0044212 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905177 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

386

Amino Acids

43.91

Weight (kDa)

8.84

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	44 - 194	4.6e-24	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023846)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56620 AT5G56620 AT5G56620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	774
AccI	GTMKAC	1 cut(s)	541
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	5 cut(s)	70, 143, 433, 801, 899
AcsI	RAATTY	4 cut(s)	143, 245, 971, 1147
AcvI	CACGTG	1 cut(s)	870
AcyI	GRCGYC	1 cut(s)	771
AfaI	GTAC	5 cut(s)	513, 882, 1048, 1109, 1124
AfiI	CCNNNNNNNGG	4 cut(s)	83, 1061, 1062, 1100
AflIII	ACRYGT	2 cut(s)	978, 1119
AgeI	ACCGGT	1 cut(s)	466
AgsI	TTSAA	4 cut(s)	33, 98, 398, 837
AjiI	CACGTC	1 cut(s)	700
AjnI	CCWGG	3 cut(s)	76, 304, 437
AluBI	AGCT	7 cut(s)	37, 101, 301, 359, 740, 833, 1116
AluI	AGCT	7 cut(s)	37, 101, 301, 359, 740, 833, 1116
Alw26I	GTCTC	2 cut(s)	231, 625
AlwI	GGATC	5 cut(s)	70, 143, 433, 801, 899
ApeKI	GCWGC	2 cut(s)	101, 740
ApoI	RAATTY	4 cut(s)	143, 245, 971, 1147
AseI	ATTAAT	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	466
Asp700I	GAANNNNTTC	1 cut(s)	249
AsuHPI	GGTGA	4 cut(s)	322, 574, 674, 779
BbrPI	CACGTG	1 cut(s)	870
BbsI	GAAGAC	2 cut(s)	1096, 1135
BbvI	GCAGC	2 cut(s)	88, 727
BccI	CCATC	5 cut(s)	257, 266, 314, 358, 881
BciT130I	CCWGG	3 cut(s)	78, 306, 439
BclI	TGATCA	3 cut(s)	474, 679, 931
BcoDI	GTCTC	2 cut(s)	231, 625
BfaI	CTAG	1 cut(s)	780
BisI	GCNGC	2 cut(s)	102, 741
BlsI	GCNGC	2 cut(s)	103, 742
BmcAI	AGTACT	2 cut(s)	513, 1048
Bme1390I	CCNGG	3 cut(s)	78, 306, 439
BmgBI	CACGTC	1 cut(s)	700
BmiI	GGNNCC	2 cut(s)	691, 763
BmrFI	CCNGG	3 cut(s)	78, 306, 439
BmsI	GCATC	4 cut(s)	485, 555, 577, 802
BpiI	GAAGAC	2 cut(s)	1096, 1135
BpuEI	CTTGAG	1 cut(s)	346
BsaAI	YACGTR	2 cut(s)	870, 1120
BsaHI	GRCGYC	1 cut(s)	771
BsaI	GGTCTC	1 cut(s)	625
BsaJI	CCNNGG	3 cut(s)	305, 685, 693
BsaWI	WCCGGW	5 cut(s)	368, 422, 466, 544, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 1061, 1062, 1100
Bse118I	RCCGGY	2 cut(s)	130, 466
BseBI	CCWGG	3 cut(s)	78, 306, 439
BseDI	CCNNGG	3 cut(s)	305, 685, 693
BseGI	GGATG	5 cut(s)	86, 229, 289, 500, 793
BseLI	CCNNNNNNNGG	4 cut(s)	83, 1061, 1062, 1100
BseMII	CTCAG	2 cut(s)	308, 405
BseXI	GCAGC	2 cut(s)	88, 727
Bsh1285I	CGRYCG	2 cut(s)	545, 1071
BshTI	ACCGGT	1 cut(s)	466
BsiEI	CGRYCG	2 cut(s)	545, 1071
BsiSI	CCGG	6 cut(s)	131, 369, 423, 467, 545, 765
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	4 cut(s)	83, 1061, 1062, 1100
BsmAI	GTCTC	2 cut(s)	231, 625
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	1 cut(s)	835
Bso31I	GGTCTC	1 cut(s)	625
Bsp1407I	TGTACA	1 cut(s)	1122
Bsp19I	CCATGG	1 cut(s)	685
BspACI	CCGC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	307, 406
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	2 cut(s)	691, 763
BspPI	GGATC	5 cut(s)	70, 143, 433, 801, 899
BspTNI	GGTCTC	1 cut(s)	625
BsrFI	RCCGGY	2 cut(s)	130, 466
BsrGI	TGTACA	1 cut(s)	1122
BssAI	RCCGGY	2 cut(s)	130, 466
BssECI	CCNNGG	3 cut(s)	305, 685, 693
BssNI	GRCGYC	1 cut(s)	771
BssT1I	CCWWGG	2 cut(s)	685, 693
Bst2UI	CCWGG	3 cut(s)	78, 306, 439
Bst4CI	ACNGT	2 cut(s)	482, 654
Bst6I	CTCTTC	3 cut(s)	591, 838, 961
BstACI	GRCGYC	1 cut(s)	771
BstAUI	TGTACA	1 cut(s)	1122
BstBAI	YACGTR	2 cut(s)	870, 1120
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	294, 414
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	5 cut(s)	86, 229, 289, 500, 793
BstMAI	GTCTC	2 cut(s)	231, 625
BstMCI	CGRYCG	2 cut(s)	545, 1071
BstNI	CCWGG	3 cut(s)	78, 306, 439
BstNSI	RCATGY	2 cut(s)	860, 982
BstSCI	CCNGG	3 cut(s)	76, 304, 437
BstV1I	GCAGC	2 cut(s)	88, 727
BstV2I	GAAGAC	2 cut(s)	1096, 1135
BstX2I	RGATCY	1 cut(s)	806
BstYI	RGATCY	1 cut(s)	806
BtgI	CCRYGG	1 cut(s)	685
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	5 cut(s)	86, 229, 289, 500, 793
BtsIMutI	CAGTG	1 cut(s)	659
Cac8I	GCNNGC	1 cut(s)	132
CciI	TCATGA	1 cut(s)	928
Cfr10I	RCCGGY	2 cut(s)	130, 466
CsiI	ACCWGGT	1 cut(s)	437
Csp6I	GTAC	5 cut(s)	512, 881, 1047, 1108, 1123
CspAI	ACCGGT	1 cut(s)	466
CviAII	CATG	9 cut(s)	91, 686, 857, 884, 929, 979, 997, 1022, 1037
CviQI	GTAC	5 cut(s)	512, 881, 1047, 1108, 1123
DdeI	CTNAG	2 cut(s)	294, 414
Eam1104I	CTCTTC	3 cut(s)	591, 838, 961
EarI	CTCTTC	3 cut(s)	591, 838, 961
Eco130I	CCWWGG	2 cut(s)	685, 693
Eco31I	GGTCTC	1 cut(s)	625
Eco72I	CACGTG	1 cut(s)	870
EcoRII	CCWGG	3 cut(s)	76, 304, 437
EcoT14I	CCWWGG	2 cut(s)	685, 693
EcoT22I	ATGCAT	2 cut(s)	570, 795
ErhI	CCWWGG	2 cut(s)	685, 693
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	9 cut(s)	94, 689, 860, 887, 932, 982, 1000, 1025, 1040
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	9 cut(s)	90, 685, 856, 883, 928, 978, 996, 1021, 1036
FauNDI	CATATG	1 cut(s)	921
FbaI	TGATCA	3 cut(s)	474, 679, 931
FblI	GTMKAC	1 cut(s)	541
Fnu4HI	GCNGC	2 cut(s)	102, 741
FokI	GGATG	5 cut(s)	93, 216, 276, 507, 780
Fsp4HI	GCNGC	2 cut(s)	102, 741
FspBI	CTAG	1 cut(s)	780
GluI	GCNGC	2 cut(s)	102, 741
HapII	CCGG	6 cut(s)	131, 369, 423, 467, 545, 765
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	9 cut(s)	94, 689, 860, 887, 932, 982, 1000, 1025, 1040
HincII	GTYRAC	3 cut(s)	420, 485, 542
HindII	GTYRAC	3 cut(s)	420, 485, 542
HindIII	AAGCTT	2 cut(s)	299, 831
HinfI	GANTC	7 cut(s)	29, 94, 410, 535, 754, 925, 1025
HpaI	GTTAAC	1 cut(s)	420
HpaII	CCGG	6 cut(s)	131, 369, 423, 467, 545, 765
HphI	GGTGA	4 cut(s)	322, 574, 674, 779
Hpy166II	GTNNAC	4 cut(s)	420, 485, 542, 1123
Hpy188I	TCNGA	9 cut(s)	153, 297, 415, 433, 639, 679, 707, 719, 959
Hpy188III	TCNNGA	5 cut(s)	161, 354, 407, 929, 1081
Hpy8I	GTNNAC	4 cut(s)	420, 485, 542, 1123
Hpy99I	CGWCG	4 cut(s)	226, 387, 543, 776
HpyAV	CCTTC	2 cut(s)	187, 599
HpyCH4III	ACNGT	2 cut(s)	482, 654
HpyCH4IV	ACGT	7 cut(s)	385, 699, 746, 771, 869, 1119, 1132
HpyCH4V	TGCA	4 cut(s)	498, 568, 751, 793
HpyF3I	CTNAG	2 cut(s)	294, 414
HpySE526I	ACGT	7 cut(s)	385, 699, 746, 771, 869, 1119, 1132
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	9 cut(s)	94, 689, 860, 887, 932, 982, 1000, 1025, 1040
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Ksp22I	TGATCA	3 cut(s)	474, 679, 931
KspAI	GTTAAC	1 cut(s)	420
LmnI	GCTCC	1 cut(s)	767
Lsp1109I	GCAGC	2 cut(s)	88, 727
LweI	GCATC	4 cut(s)	485, 555, 577, 802
MabI	ACCWGGT	1 cut(s)	437
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	7 cut(s)	385, 699, 746, 771, 869, 1119, 1132
MaeIII	GTNAC	5 cut(s)	17, 281, 310, 767, 1039
MflI	RGATCY	1 cut(s)	806
MlyI	GAGTC	3 cut(s)	404, 763, 1034
MmeI	TCCRAC	3 cut(s)	103, 176, 697
MnlI	CCTC	6 cut(s)	32, 303, 485, 586, 811, 868
Mph1103I	ATGCAT	2 cut(s)	570, 795
MroNI	GCCGGC	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	4 cut(s)	419, 588, 786, 1159
MspI	CCGG	6 cut(s)	131, 369, 423, 467, 545, 765
MspR9I	CCNGG	3 cut(s)	78, 306, 439
MvaI	CCWGG	3 cut(s)	78, 306, 439
NaeI	GCCGGC	1 cut(s)	132
NcoI	CCATGG	1 cut(s)	685
NdeI	CATATG	1 cut(s)	921
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	9 cut(s)	94, 689, 860, 887, 932, 982, 1000, 1025, 1040
NlaIV	GGNNCC	2 cut(s)	691, 763
NmuCI	GTSAC	2 cut(s)	310, 767
NsiI	ATGCAT	2 cut(s)	570, 795
NspI	RCATGY	2 cut(s)	860, 982
PagI	TCATGA	1 cut(s)	928
PciI	ACATGT	1 cut(s)	978
PdiI	GCCGGC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	4 cut(s)	29, 94, 535, 925
PfoI	TCCNGGA	1 cut(s)	76
PinAI	ACCGGT	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	103, 742
PleI	GAGTC	3 cut(s)	404, 762, 1033
PmaCI	CACGTG	1 cut(s)	870
PmlI	CACGTG	1 cut(s)	870
PpsI	GAGTC	3 cut(s)	404, 762, 1033
Ppu21I	YACGTR	2 cut(s)	870, 1120
PscI	ACATGT	1 cut(s)	978
PshBI	ATTAAT	1 cut(s)	588
Psp6I	CCWGG	3 cut(s)	76, 304, 437
PspCI	CACGTG	1 cut(s)	870
PspGI	CCWGG	3 cut(s)	76, 304, 437
PspN4I	GGNNCC	2 cut(s)	691, 763
PsuI	RGATCY	1 cut(s)	806
RsaI	GTAC	5 cut(s)	513, 882, 1048, 1109, 1124
RsaNI	GTAC	5 cut(s)	512, 881, 1047, 1108, 1123
SalI	GTCGAC	1 cut(s)	540
SaqAI	TTAA	4 cut(s)	419, 588, 786, 1159
SatI	GCNGC	2 cut(s)	102, 741
ScaI	AGTACT	2 cut(s)	513, 1048
SchI	GAGTC	3 cut(s)	404, 763, 1034
ScrFI	CCNGG	3 cut(s)	78, 306, 439
SexAI	ACCWGGT	1 cut(s)	437
SfaNI	GCATC	4 cut(s)	485, 555, 577, 802
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	780
StyD4I	CCNGG	3 cut(s)	76, 304, 437
StyI	CCWWGG	2 cut(s)	685, 693
TaaI	ACNGT	2 cut(s)	482, 654
TaiI	ACGT	7 cut(s)	388, 702, 749, 774, 872, 1122, 1135
TaqI	TCGA	3 cut(s)	39, 147, 541
TaqII	GACCGA	1 cut(s)	1057
TatI	WGTACW	4 cut(s)	511, 880, 1046, 1122
TfiI	GAWTC	4 cut(s)	29, 94, 535, 925
Tru1I	TTAA	4 cut(s)	419, 588, 786, 1159
Tru9I	TTAA	4 cut(s)	419, 588, 786, 1159
TscAI	CASTG	1 cut(s)	659
TseFI	GTSAC	2 cut(s)	310, 767
TseI	GCWGC	2 cut(s)	101, 740
Tsp45I	GTSAC	2 cut(s)	310, 767
TspDTI	ATGAA	3 cut(s)	17, 258, 917
TspRI	CASTG	1 cut(s)	659
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	4 cut(s)	143, 245, 971, 1147
XceI	RCATGY	2 cut(s)	860, 982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XmiI	GTMKAC	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	780
ZraI	GACGTC	1 cut(s)	772
ZrmI	AGTACT	2 cut(s)	513, 1048
Zsp2I	ATGCAT	2 cut(s)	570, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.