AT5G62110
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0027317
Physical Location & Seq
Reverse (-)
24942169 .. 24946087
3919 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62110.2

Sequence Viewer

Length: 1701 bp
ATGAGAGAAAGCGTCGGATTTTCGAGGGGTGTATTGCCTTTAAATGAAGAAAGTGAATGCGCTTTTGAAACATCTCAAATGTCTCAAGTTCCTAGGCGTGGACAATATGGTACACCAAGCGACATTTCGGTTGATAGTAATGGCAACGGGCATCTTGGTGAAAGTCTAGGCGCCATGAACTGGAATCTCAACAACAATGATGTGAGGAACTATGAGAGTTCAACTTCGAGGTTTTCCTCTCCATTTTCATCGTTCTTACACAACAAGGTTCAGCCACATCACAATTTAATTTCACAAACGGATGGTCTGCTTTCTACAAGCATCCTTGATACATCTCAAGTTCCTTCTTTTGGACAATATGGTATACCAAATGATGTTGTCGGTATGGAACCTGAATTTGGTACTAGTTACATGCATAGTAACTACAATGGTATCAATACTGATCAAGTTGGAAATCTGGTTGGACTTGGTAGAGAAAGAGTTAATGTTAATGGTAATGTCTCTCTTGGTCAAAATTTGGGTAGTATGAATTGGAATTTCGATGAAAACAACATGAGTAATCATGGAAGTTCAACTTCGAGGTTTTCTTCTCCATTTTCATCATTCGAGGATCAGTCACTAAGTCATTTAAACGAGGAAACAAATGAGTTGGTTCCTGGATTAGAGAATCTAAGCCTATACAATGATCATCAAAGCATCAACCCATTTCTTGGCAATACGATTAATTCCCATTTTGTTGAGAATCAGGATCAAGGTTTAGTGAATAATGAAAATCTTGAATTTGCTAACGATGATCAACTGGAAAGGAATGAAATTCTTACTACTTATTCTGTTGAGGATATTAATAATTTGAGCATTAATAACGTGAAGTTAAACTCTAATGGGGAAACATTGAATTCTACTGCTGCTAATTTGGAAATGCTTTTTCCTACTCTTGACATGAACATTGTAAATCAGCATCAAGGTCAAGTGTTGAGTGGTGGAAATCTTGAATTTGCCAACGATAATCAACTTGAAAGGAATGCAATTCTTGCTGGTTATTCTATTGAGGATATTAATAATTTGAGCATTAATAACCATCAAGGTCAAGTGTTGAGTGGTGTAAATTTTGAATTTGCCAACGATAATCAATTCGAAAGGAATGCAATTCTTGCTGGTTATTCTATTGAGGATATTAATAATTTGAGCATTAATAACGTGAATGACAACTCTAATGAAGAAACATTGAACTCTATTGCTGCTAATAATGAAATGAATTTTACTATTCTCGACGTGAACACTATAAATCAGGTGAATGGCAACTCTAATGAAGAAACATTGAACTCTATTGTTGCTAATTCTGAAATAAATTTTACTACTCTCGACGTAAACACTATAAATCAGGTGGATAACAACTTTAATGAAGAAACATTGAACTCTATTGCTGCTAATTCTGAAATGAATTTTACTACTCTCGACGTGAACATTATAAATGAGGAAGAACAAGGTGCTGTAGATATGATGGATATTGTAATTACATTTGATGAGGAGGAAGAAGATGTTGCAGCTTTGACTGATATTCCAGAACAAGATGTTGAGATTTTGACTGATGTTCCTGAACAAGGTGTTACAGATTTGACTGATGTTCCATTGACATTTGATCAGGATTGGAAGGATGATGGCCTCATGAACTTTATGCTGGATGTTGACGACATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Myb_DNA-binding Response_reg

Protein Analysis

566

Amino Acids

62.69

Weight (kDa)

4.05

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027317)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62110 AT5G62110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1469
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 2 cut(s) 180, 710
AccI GTMKAC 1 cut(s) 364
AclWI GGATC 2 cut(s) 618, 756
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 2 cut(s) 112, 403
AfiI CCNNNNNNNGG 6 cut(s) 98, 180, 350, 398, 710, 1601
AflIII ACRYGT 1 cut(s) 1692
AhlI ACTAGT 1 cut(s) 404
AjiI CACGTC 2 cut(s) 1273, 1459
AjnI CCWGG 1 cut(s) 655
AjuI GAANNNNNNNTTGG 4 cut(s) 109, 141, 381, 413
AluBI AGCT 1 cut(s) 1547
AluI AGCT 1 cut(s) 1547
Alw26I GTCTC 2 cut(s) 87, 505
AlwI GGATC 2 cut(s) 618, 756
AoxI GGCC 1 cut(s) 1660
ApeKI GCWGC 4 cut(s) 905, 1238, 1424, 1544
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
AseI ATTAAT 7 cut(s) 723, 843, 858, 1056, 1071, 1176, 1191
AspA2I CCTAGG 1 cut(s) 92
AspLEI GCGC 2 cut(s) 62, 173
AsuHPI GGTGA 2 cut(s) 170, 1303
AsuII TTCGAA 1 cut(s) 1134
AvrII CCTAGG 1 cut(s) 92
BaeI ACNNNNGTAYC 2 cut(s) 415, 448
BanI GGYRCC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 892, 1225, 1411, 1556
BccI CCATC 4 cut(s) 296, 1086, 1495, 1652
BcgI CGANNNNNNTGC 2 cut(s) 1124, 1158
BciT130I CCWGG 1 cut(s) 657
BclI TGATCA 4 cut(s) 442, 685, 793, 1639
BcoDI GTCTC 2 cut(s) 87, 505
BcuI ACTAGT 1 cut(s) 404
BfaI CTAG 3 cut(s) 93, 167, 405
BfmI CTRYAG 1 cut(s) 1491
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 4 cut(s) 906, 1239, 1425, 1545
BlnI CCTAGG 1 cut(s) 92
BlsI GCNGC 4 cut(s) 907, 1240, 1426, 1546
Bme1390I CCNGG 1 cut(s) 657
BmgBI CACGTC 2 cut(s) 1273, 1459
BmiI GGNNCC 3 cut(s) 172, 390, 654
BmrFI CCNGG 1 cut(s) 657
BmsI GCATC 4 cut(s) 160, 330, 705, 967
Bpu14I TTCGAA 1 cut(s) 1134
BpuEI CTTGAG 2 cut(s) 69, 321
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 6 cut(s) 98, 180, 350, 398, 710, 1601
Bse1I ACTGG 2 cut(s) 185, 804
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 4 cut(s) 307, 321, 1660, 1687
BseLI CCNNNNNNNGG 6 cut(s) 98, 180, 350, 398, 710, 1601
BseNI ACTGG 2 cut(s) 185, 804
BseRI GAGGAG 1 cut(s) 1541
BseXI GCAGC 4 cut(s) 892, 1225, 1411, 1556
BshFI GGCC 1 cut(s) 1662
BshNI GGYRCC 1 cut(s) 170
BslI CCNNNNNNNGG 6 cut(s) 98, 180, 350, 398, 710, 1601
BsmAI GTCTC 2 cut(s) 87, 505
BsmI GAATGC 3 cut(s) 62, 1027, 1147
BsnI GGCC 1 cut(s) 1662
Bsp119I TTCGAA 1 cut(s) 1134
Bsp143I GATC 6 cut(s) 442, 610, 685, 748, 793, 1639
BspANI GGCC 1 cut(s) 1662
BspHI TCATGA 1 cut(s) 1665
BspLI GGNNCC 3 cut(s) 172, 390, 654
BspPI GGATC 2 cut(s) 618, 756
BspT104I TTCGAA 1 cut(s) 1134
BspT107I GGYRCC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 185, 804
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 6 cut(s) 442, 610, 685, 748, 793, 1639
BssNAI GTATAC 1 cut(s) 365
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 92
Bst1107I GTATAC 1 cut(s) 365
Bst2UI CCWGG 1 cut(s) 657
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 2 cut(s) 1031, 1151
BstBI TTCGAA 1 cut(s) 1134
BstDEI CTNAG 2 cut(s) 620, 671
BstENI CCTNNNNNAGG 1 cut(s) 1599
BstF5I GGATG 4 cut(s) 307, 321, 1660, 1687
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 2 cut(s) 62, 173
BstKTI GATC 6 cut(s) 445, 613, 688, 751, 796, 1642
BstMAI GTCTC 2 cut(s) 87, 505
BstMBI GATC 6 cut(s) 442, 610, 685, 748, 793, 1639
BstMWI GCNNNNNNNGC 2 cut(s) 1031, 1151
BstNI CCWGG 1 cut(s) 657
BstNSI RCATGY 2 cut(s) 415, 1696
BstSCI CCNGG 1 cut(s) 655
BstSFI CTRYAG 1 cut(s) 1491
BstV1I GCAGC 4 cut(s) 892, 1225, 1411, 1556
BstZ17I GTATAC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 1662
BtrI CACGTC 2 cut(s) 1273, 1459
BtsCI GGATG 4 cut(s) 307, 321, 1660, 1687
CciI TCATGA 1 cut(s) 1665
CfoI GCGC 2 cut(s) 62, 173
Csp6I GTAC 2 cut(s) 111, 402
CviAII CATG 7 cut(s) 175, 412, 553, 563, 940, 1666, 1693
CviJI RGCY 4 cut(s) 274, 675, 1547, 1662
CviKI_1 RGCY 4 cut(s) 274, 675, 1547, 1662
CviQI GTAC 2 cut(s) 111, 402
DdeI CTNAG 2 cut(s) 620, 671
DinI GGCGCC 1 cut(s) 172
DpnI GATC 6 cut(s) 444, 612, 687, 750, 795, 1641
DpnII GATC 6 cut(s) 442, 610, 685, 748, 793, 1639
DraI TTTAAA 2 cut(s) 42, 630
Eco130I CCWWGG 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 1599
EcoRI GAATTC 1 cut(s) 895
EcoRII CCWGG 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 92
EcoT22I ATGCAT 1 cut(s) 417
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 7 cut(s) 178, 415, 556, 566, 943, 1669, 1696
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FatI CATG 7 cut(s) 174, 411, 552, 562, 939, 1665, 1692
FbaI TGATCA 4 cut(s) 442, 685, 793, 1639
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 4 cut(s) 906, 1239, 1425, 1545
FokI GGATG 4 cut(s) 308, 314, 1667, 1694
Fsp4HI GCNGC 4 cut(s) 906, 1239, 1425, 1545
FspBI CTAG 3 cut(s) 93, 167, 405
GlaI GCGC 2 cut(s) 61, 172
GluI GCNGC 4 cut(s) 906, 1239, 1425, 1545
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 1 cut(s) 1662
HhaI GCGC 2 cut(s) 62, 173
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 7 cut(s) 178, 415, 556, 566, 943, 1669, 1696
Hin6I GCGC 2 cut(s) 60, 171
HinP1I GCGC 2 cut(s) 60, 171
HincII GTYRAC 1 cut(s) 1687
HindII GTYRAC 1 cut(s) 1687
HinfI GANTC 3 cut(s) 184, 667, 742
HphI GGTGA 2 cut(s) 170, 1303
Hpy166II GTNNAC 7 cut(s) 101, 113, 365, 1276, 1369, 1462, 1687
Hpy188I TCNGA 3 cut(s) 17, 1342, 1435
Hpy8I GTNNAC 7 cut(s) 101, 113, 365, 1276, 1369, 1462, 1687
Hpy99I CGWCG 4 cut(s) 17, 1274, 1367, 1460
HpyAV CCTTC 2 cut(s) 354, 1645
HpyCH4IV ACGT 5 cut(s) 864, 1197, 1272, 1365, 1458
HpyCH4V TGCA 4 cut(s) 415, 1025, 1145, 1544
HpyF10VI GCNNNNNNNGC 2 cut(s) 1031, 1151
HpyF3I CTNAG 2 cut(s) 620, 671
HpySE526I ACGT 5 cut(s) 864, 1197, 1272, 1365, 1458
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 7 cut(s) 178, 415, 556, 566, 943, 1669, 1696
HspAI GCGC 2 cut(s) 60, 171
KasI GGCGCC 1 cut(s) 170
Ksp22I TGATCA 4 cut(s) 442, 685, 793, 1639
Kzo9I GATC 6 cut(s) 442, 610, 685, 748, 793, 1639
Lsp1109I GCAGC 4 cut(s) 892, 1225, 1411, 1556
LweI GCATC 4 cut(s) 160, 330, 705, 967
MaeI CTAG 3 cut(s) 93, 167, 405
MaeII ACGT 5 cut(s) 864, 1197, 1272, 1365, 1458
MaeIII GTNAC 4 cut(s) 407, 419, 615, 1606
MalI GATC 6 cut(s) 444, 612, 687, 750, 795, 1641
MboI GATC 6 cut(s) 442, 610, 685, 748, 793, 1639
MboII GAAGA 8 cut(s) 59, 579, 1229, 1322, 1415, 1490, 1544, 1547
Mly113I GGCGCC 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 430, 442
Mph1103I ATGCAT 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 657
Mva1269I GAATGC 3 cut(s) 62, 1027, 1147
MvaI CCWGG 1 cut(s) 657
MwoI GCNNNNNNNGC 2 cut(s) 1031, 1151
NarI GGCGCC 1 cut(s) 171
NdeII GATC 6 cut(s) 442, 610, 685, 748, 793, 1639
NlaIII CATG 7 cut(s) 178, 415, 556, 566, 943, 1669, 1696
NlaIV GGNNCC 3 cut(s) 172, 390, 654
NmuCI GTSAC 1 cut(s) 615
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 2 cut(s) 415, 1696
NspV TTCGAA 1 cut(s) 1134
PagI TCATGA 1 cut(s) 1665
PciI ACATGT 1 cut(s) 1692
PctI GAATGC 3 cut(s) 62, 1027, 1147
PfeI GAWTC 3 cut(s) 184, 667, 742
PflMI CCANNNNNTGG 2 cut(s) 180, 710
PfoI TCCNGGA 1 cut(s) 655
PkrI GCNGC 4 cut(s) 907, 1240, 1426, 1546
PluTI GGCGCC 1 cut(s) 174
PscI ACATGT 1 cut(s) 1692
PshBI ATTAAT 7 cut(s) 723, 843, 858, 1056, 1071, 1176, 1191
PsiI TTATAA 1 cut(s) 1469
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 3 cut(s) 172, 390, 654
RsaI GTAC 2 cut(s) 112, 403
RsaNI GTAC 2 cut(s) 111, 402
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 4 cut(s) 906, 1239, 1425, 1545
Sau3AI GATC 6 cut(s) 442, 610, 685, 748, 793, 1639
ScrFI CCNGG 1 cut(s) 657
SfaNI GCATC 4 cut(s) 160, 330, 705, 967
SfcI CTRYAG 1 cut(s) 1491
SfoI GGCGCC 1 cut(s) 172
SfuI TTCGAA 1 cut(s) 1134
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 2 cut(s) 84, 336
SmoI CTYRAG 2 cut(s) 84, 336
SpeI ACTAGT 1 cut(s) 404
SspDI GGCGCC 1 cut(s) 170
SspMI CTAG 3 cut(s) 93, 167, 405
StyD4I CCNGG 1 cut(s) 655
StyI CCWWGG 1 cut(s) 92
TaiI ACGT 5 cut(s) 867, 1200, 1275, 1368, 1461
TaqI TCGA 9 cut(s) 23, 227, 540, 578, 606, 1134, 1269, 1362, 1455
TfiI GAWTC 3 cut(s) 184, 667, 742
TseFI GTSAC 1 cut(s) 615
TseI GCWGC 4 cut(s) 905, 1238, 1424, 1544
Tsp45I GTSAC 1 cut(s) 615
TspGWI ACGGA 1 cut(s) 314
Van91I CCANNNNNTGG 2 cut(s) 180, 710
VspI ATTAAT 7 cut(s) 723, 843, 858, 1056, 1071, 1176, 1191
XagI CCTNNNNNAGG 1 cut(s) 1599
XceI RCATGY 2 cut(s) 415, 1696
XmaJI CCTAGG 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 364
XspI CTAG 3 cut(s) 93, 167, 405
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.