AT5G65130

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0026758
Physical Location & Seq
Forward (+)
26017185 .. 26018349
1165 bp
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UTR
Exon/CDS
Intron
AT5G65130.1

Sequence Viewer

Length: 834 bp
ATGGCTTTAAACATGAATGCTTACGTAGACGAGTTCATGGAAGCTCTTGAACCATTCATGAAGGTAACTTCATCTTCTTCTACTTCGAATTCATCAAATCCAAAACCATTAACTCCTAATTTCATCCCTAATAATGACCAAGTCTTACCGGTATCTAACCAAACCGGTCCGATTGGGCTAAACCAGCTCACTCCAACACAAATCCTCCAAATTCAGACAGAGTTACATCTCCGGCAAAACCAATCTCGTCGTCGCGCTGGTAGTCATCTTCTCACCGCTAAACCAACCTCAATGAAGAAAATCGACGTAGCAACTAAACCGGTTAAACTATACCGAGGCGTAAGACAGAGGCAATGGGGTAAATGGGTAGCTGAGATTCGGCTACCTAAAAACCGAACCCGGTTATGGCTCGGTACGTTCGAAACGGCTCAAGAAGCTGCATTAGCTTACGATCAAGCAGCTCATAAGATCAGAGGAGACAACGCTCGTCTCAATTTCCCAGACATTGTTCGTCAAGGACACTATAAACAGATATTGTCTCCGTCTATCAACGCAAAGATCGAATCCATCTGCAATAGTTCTGATCTTCCACTGCCTCAGATCGAGAAACAGAACAAAACAGAGGAGGTGCTCTCTGGTTTTTCCAAACCGGAGAAAGAACCGGAATTTGGGGAGATATACGGATGCGGATACTCGGGCTCATCTCCTGAGTCGGATATAACGTTGTTGGATTTCTCAAGCGACTGTGTGAAAGAAGATGAGAGTTTCTTGATGGGTTTGCACAAGTATCCTTCTTTGGAGATTGATTGGGACGCTATAGAGAAACTCTTCTGA

Protein Analysis

277

Amino Acids

31.21

Weight (kDa)

6.54

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 110 - 159 1.9e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026758)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65130 AT5G65130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AccII CGCG 1 cut(s) 255
AciI CCGC 2 cut(s) 276, 687
AclI AACGTT 1 cut(s) 722
AcsI RAATTY 3 cut(s) 88, 210, 665
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 2 cut(s) 405, 668
AgeI ACCGGT 3 cut(s) 148, 164, 319
AgsI TTSAA 1 cut(s) 50
AjuI GAANNNNNNNTTGG 2 cut(s) 651, 683
AluBI AGCT 6 cut(s) 44, 187, 371, 437, 446, 461
AluI AGCT 6 cut(s) 44, 187, 371, 437, 446, 461
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 3 cut(s) 471, 494, 543
Ama87I CYCGRG 1 cut(s) 694
ApeKI GCWGC 2 cut(s) 437, 458
ApoI RAATTY 3 cut(s) 88, 210, 665
AsiGI ACCGGT 3 cut(s) 148, 164, 319
Asp700I GAANNNNTTC 1 cut(s) 827
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 265
AsuII TTCGAA 2 cut(s) 86, 420
AvaI CYCGRG 1 cut(s) 694
AvaII GGWCC 1 cut(s) 167
BanII GRGCYC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 633
BbvI GCAGC 2 cut(s) 424, 470
BccI CCATC 2 cut(s) 575, 766
BceAI ACGGC 1 cut(s) 441
BciVI GTATCC 2 cut(s) 683, 798
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 3 cut(s) 471, 494, 543
BfmI CTRYAG 1 cut(s) 816
BfuI GTATCC 2 cut(s) 683, 798
BisI GCNGC 2 cut(s) 438, 459
BlsI GCNGC 2 cut(s) 439, 460
Bme1390I CCNGG 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 1 cut(s) 674
BplI GAGNNNNNCTC 2 cut(s) 617, 649
Bpu14I TTCGAA 2 cut(s) 86, 420
BpuEI CTTGAG 2 cut(s) 414, 721
BpuMI CCSGG 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 334
BsaWI WCCGGW 5 cut(s) 148, 164, 319, 649, 661
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 668
Bse118I RCCGGY 3 cut(s) 148, 164, 319
Bse3DI GCAATG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 2 cut(s) 123, 689
BseLI CCNNNNNNNGG 2 cut(s) 405, 668
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 3 cut(s) 363, 611, 699
BseRI GAGGAG 2 cut(s) 489, 638
BseXI GCAGC 2 cut(s) 424, 470
Bsh1236I CGCG 1 cut(s) 255
BshTI ACCGGT 3 cut(s) 148, 164, 319
BsiHKAI GWGCWC 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 694
BsiSI CCGG 7 cut(s) 149, 165, 232, 320, 400, 650, 662
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 2 cut(s) 405, 668
BsmAI GTCTC 3 cut(s) 471, 494, 543
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 824
BsmI GAATGC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 694
Bsp119I TTCGAA 2 cut(s) 86, 420
Bsp1286I GDGCHC 2 cut(s) 633, 701
Bsp143I GATC 5 cut(s) 451, 468, 558, 583, 600
BspACI CCGC 2 cut(s) 276, 687
BspCNI CTCAG 3 cut(s) 364, 610, 700
BspFNI CGCG 1 cut(s) 255
BspHI TCATGA 1 cut(s) 57
BspT104I TTCGAA 2 cut(s) 86, 420
BsrDI GCAATG 1 cut(s) 359
BsrFI RCCGGY 3 cut(s) 148, 164, 319
BssAI RCCGGY 3 cut(s) 148, 164, 319
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 5 cut(s) 451, 468, 558, 583, 600
Bst4CI ACNGT 1 cut(s) 746
BstBAI YACGTR 1 cut(s) 25
BstBI TTCGAA 2 cut(s) 86, 420
BstDEI CTNAG 3 cut(s) 372, 597, 708
BstF5I GGATG 2 cut(s) 123, 689
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 5 cut(s) 454, 471, 561, 586, 603
BstMAI GTCTC 3 cut(s) 471, 494, 543
BstMBI GATC 5 cut(s) 451, 468, 558, 583, 600
BstMWI GCNNNNNNNGC 3 cut(s) 184, 434, 443
BstSCI CCNGG 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 816
BstSNI TACGTA 1 cut(s) 25
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 424, 470
BsuI GTATCC 2 cut(s) 683, 798
BtsCI GGATG 2 cut(s) 123, 689
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 57
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 3 cut(s) 148, 164, 319
Cfr13I GGNCC 1 cut(s) 167
CpoI CGGWCCG 1 cut(s) 167
CseI GACGC 1 cut(s) 821
Csp6I GTAC 1 cut(s) 414
CspAI ACCGGT 3 cut(s) 148, 164, 319
CspI CGGWCCG 1 cut(s) 167
CviAII CATG 3 cut(s) 13, 37, 58
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 3 cut(s) 372, 597, 708
DpnI GATC 5 cut(s) 453, 470, 560, 585, 602
DpnII GATC 5 cut(s) 451, 468, 558, 583, 600
DraI TTTAAA 1 cut(s) 9
Eco105I TACGTA 1 cut(s) 25
Eco24I GRGCYC 1 cut(s) 701
Eco47I GGWCC 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 694
EcoRI GAATTC 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 701
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 3 cut(s) 16, 40, 61
FaqI GGGAC 1 cut(s) 824
FatI CATG 3 cut(s) 12, 36, 57
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 438, 459
FokI GGATG 2 cut(s) 110, 696
FriOI GRGCYC 1 cut(s) 701
Fsp4HI GCNGC 2 cut(s) 438, 459
GlaI GCGC 1 cut(s) 256
GluI GCNGC 2 cut(s) 438, 459
HapII CCGG 7 cut(s) 149, 165, 232, 320, 400, 650, 662
HgaI GACGC 1 cut(s) 821
HhaI GCGC 1 cut(s) 257
Hin1II CATG 3 cut(s) 16, 40, 61
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 3 cut(s) 376, 563, 710
HpaII CCGG 7 cut(s) 149, 165, 232, 320, 400, 650, 662
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 7 cut(s) 171, 216, 473, 583, 600, 715, 833
Hpy188III TCNNGA 6 cut(s) 47, 58, 431, 604, 707, 769
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 3 cut(s) 252, 255, 308
HpyAV CCTTC 2 cut(s) 55, 801
HpyCH4III ACNGT 1 cut(s) 746
HpyCH4IV ACGT 4 cut(s) 24, 306, 416, 722
HpyCH4V TGCA 3 cut(s) 440, 573, 781
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 434, 443
HpyF3I CTNAG 3 cut(s) 372, 597, 708
HpySE526I ACGT 4 cut(s) 24, 306, 416, 722
Hsp92II CATG 3 cut(s) 16, 40, 61
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 5 cut(s) 451, 468, 558, 583, 600
Lsp1109I GCAGC 2 cut(s) 424, 470
LweI GCATC 1 cut(s) 674
MaeII ACGT 4 cut(s) 24, 306, 416, 722
MaeIII GTNAC 2 cut(s) 64, 222
MalI GATC 5 cut(s) 453, 470, 560, 585, 602
MboI GATC 5 cut(s) 451, 468, 558, 583, 600
MboII GAAGA 7 cut(s) 66, 69, 260, 307, 578, 767, 820
MhlI GDGCHC 2 cut(s) 633, 701
MluCI AATT 5 cut(s) 88, 118, 210, 493, 665
MlyI GAGTC 1 cut(s) 719
MmeI TCCRAC 3 cut(s) 218, 693, 708
MnlI CCTC 8 cut(s) 215, 298, 329, 342, 467, 606, 616, 619
MroXI GAANNNNTTC 1 cut(s) 827
MseI TTAA 3 cut(s) 8, 110, 324
MspI CCGG 7 cut(s) 149, 165, 232, 320, 400, 650, 662
MspR9I CCNGG 1 cut(s) 400
Mva1269I GAATGC 1 cut(s) 22
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 3 cut(s) 184, 434, 443
NciI CCSGG 1 cut(s) 400
NdeII GATC 5 cut(s) 451, 468, 558, 583, 600
NlaIII CATG 3 cut(s) 16, 40, 61
NspV TTCGAA 2 cut(s) 86, 420
PagI TCATGA 1 cut(s) 57
PcsI WCGNNNNNNNCGW 3 cut(s) 417, 558, 719
PctI GAATGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 2 cut(s) 376, 563
PflFI GACNNNGTC 1 cut(s) 140
PinAI ACCGGT 3 cut(s) 148, 164, 319
PkrI GCNGC 2 cut(s) 439, 460
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
Ppu21I YACGTR 1 cut(s) 25
Psp1406I AACGTT 1 cut(s) 722
PspPI GGNCC 1 cut(s) 167
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
Rsr2I CGGWCCG 1 cut(s) 167
RsrII CGGWCCG 1 cut(s) 167
SaqAI TTAA 3 cut(s) 8, 110, 324
SatI GCNGC 2 cut(s) 438, 459
Sau3AI GATC 5 cut(s) 451, 468, 558, 583, 600
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 2 cut(s) 633, 701
SfaNI GCATC 1 cut(s) 674
SfcI CTRYAG 1 cut(s) 816
SfuI TTCGAA 2 cut(s) 86, 420
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 429, 736
SmoI CTYRAG 2 cut(s) 429, 736
SnaBI TACGTA 1 cut(s) 25
Sse9I AATT 5 cut(s) 88, 118, 210, 493, 665
SsiI CCGC 2 cut(s) 276, 687
StyD4I CCNGG 1 cut(s) 398
TaaI ACNGT 1 cut(s) 746
TaiI ACGT 4 cut(s) 27, 309, 419, 725
TaqI TCGA 5 cut(s) 86, 303, 420, 561, 603
TasI AATT 5 cut(s) 88, 118, 210, 493, 665
TfiI GAWTC 2 cut(s) 376, 563
Tru1I TTAA 3 cut(s) 8, 110, 324
Tru9I TTAA 3 cut(s) 8, 110, 324
TscAI CASTG 1 cut(s) 597
TseI GCWGC 2 cut(s) 437, 458
TspDTI ATGAA 8 cut(s) 25, 29, 46, 60, 74, 81, 112, 308
TspGWI ACGGA 2 cut(s) 531, 696
TspRI CASTG 1 cut(s) 597
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 3 cut(s) 88, 210, 665
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.