FvH4_1g04730

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0023970
Physical Location & Seq
Forward (+)
2499910 .. 2500662
753 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04730.t1

Sequence Viewer

Length: 606 bp
ATGGCCGGAGAAATTACGTCTTCTTATAACACAACAGTGGTGCAAGGAAAAGAAGAATTCTACCCGCAAGACGAGAACTTCTCACAAGGCGAGAACGTGATATTGCTGATAAAATTCGAAAAGGTAATCGGAGGCAGCCGGAATGGGAAGCACGAAATAATTAGTAGAACACGGATAGGGAAGAAATTATGGATGCCGTTGAATCTGAACAGTGCCAAGATGTTAGCCCACAAGCGTGTCAATGCTCTGAACATATCTATGTTTCTTTCATTCATGGGTGTCCCCAGAGAAGAGCTGGCTGGAGTTGTTCAGAAAATATTCGAGGTGATTGACATGGCCGTCTCCCCCGAGCGGCCTATCTCTGTTGACATAGAGTGGTTGGTTGATGAGCGCAATGAGACGCCGTCGTCGTGTGCGATTTGTTTGGAAGATTTTGCAGAACGAGAAGAAGAAGAAGAAGAAGAAGAAGGCATTACTAGTTTGCCCTGCGCACACCGTTATCATCAAAAATGCATTGACGCCTGGCTGATAATCAAGCCCCTCTGTCCCTTGTGCCGACACTCAATGCCATCAAAAATTCAAAACCCTAACCCTTGCTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004814 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006355 GO:0006357 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008340 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010259 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0017101 GO:0019219 GO:0019222 GO:0019538 GO:0019752 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031406 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034618 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00970 map00970
Pfam Domains
Protein Families
Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

202

Amino Acids

22.83

Weight (kDa)

5.23

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 137 - 186 1.4e-12 Ring finger domain
zf-rbx1 PF12678 137 - 186 2.1e-09 RING-H2 zinc finger domain
zf-C3HC4 PF00097 138 - 185 1.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 138 - 172 2.4e-07 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023970)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04730
rosa_chinensis RchiOBHm_Chr6g0275591
rosa_samantha Rh6BG198500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AasI GACNNNNNNGTC 2 cut(s) 338, 406
Acc16I TGCGCA 1 cut(s) 490
AccBSI CCGCTC 1 cut(s) 352
AciI CCGC 2 cut(s) 65, 352
AcoI YGGCCR 2 cut(s) 3, 336
AcsI RAATTY 3 cut(s) 56, 113, 576
AcyI GRCGYC 2 cut(s) 401, 519
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 2 cut(s) 202, 581
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 1 cut(s) 521
AleI CACNNNNGTG 2 cut(s) 35, 234
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 2 cut(s) 346, 392
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 3 cut(s) 3, 336, 353
ApeKI GCWGC 3 cut(s) 135, 597, 600
ApoI RAATTY 3 cut(s) 56, 113, 576
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 2 cut(s) 393, 491
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 147, 584, 587
BccI CCATC 1 cut(s) 577
BceAI ACGGC 3 cut(s) 181, 323, 388
BciT130I CCWGG 1 cut(s) 523
BcoDI GTCTC 2 cut(s) 346, 392
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 1 cut(s) 477
BisI GCNGC 4 cut(s) 136, 353, 598, 601
BlsI GCNGC 4 cut(s) 137, 354, 599, 602
Bme1390I CCNGG 1 cut(s) 523
BmeT110I CYCGRG 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 523
BmsI GCATC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 117
BsaHI GRCGYC 2 cut(s) 401, 519
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 523
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 400
BseXI GCAGC 3 cut(s) 147, 584, 587
BshFI GGCC 3 cut(s) 5, 338, 355
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 2 cut(s) 6, 139
BslFI GGGAC 2 cut(s) 266, 531
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 2 cut(s) 346, 392
BsmBI CGTCTC 2 cut(s) 346, 392
BsmFI GGGAC 2 cut(s) 266, 531
BsnI GGCC 3 cut(s) 5, 338, 355
BsoBI CYCGRG 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 117
BspACI CCGC 2 cut(s) 65, 352
BspANI GGCC 3 cut(s) 5, 338, 355
BspQI GCTCTTC 1 cut(s) 285
BspT104I TTCGAA 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 400
BssNI GRCGYC 2 cut(s) 401, 519
Bst2UI CCWGG 1 cut(s) 523
Bst4CI ACNGT 3 cut(s) 37, 212, 497
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 2 cut(s) 401, 519
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 297
BstF5I GGATG 1 cut(s) 198
BstHHI GCGC 2 cut(s) 393, 491
BstMAI GTCTC 2 cut(s) 346, 392
BstNI CCWGG 1 cut(s) 523
BstSCI CCNGG 1 cut(s) 521
BstV1I GCAGC 3 cut(s) 147, 584, 587
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 3 cut(s) 5, 338, 355
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 42, 217
Cac8I GCNNGC 1 cut(s) 297
CfoI GCGC 2 cut(s) 393, 491
CseI GACGC 2 cut(s) 409, 527
CviAII CATG 2 cut(s) 274, 334
CviJI RGCY 9 cut(s) 5, 138, 227, 295, 299, 338, 355, 526, 538
CviKI_1 RGCY 9 cut(s) 5, 138, 227, 295, 299, 338, 355, 526, 538
DrdI GACNNNNNNGTC 2 cut(s) 338, 406
DseDI GACNNNNNNGTC 2 cut(s) 338, 406
EaeI YGGCCR 2 cut(s) 3, 336
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 347
EcoRI GAATTC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 521
EcoT22I ATGCAT 1 cut(s) 515
Esp3I CGTCTC 2 cut(s) 346, 392
FaeI CATG 2 cut(s) 277, 337
FaiI YATR 7 cut(s) 27, 190, 254, 260, 275, 335, 371
FaqI GGGAC 2 cut(s) 266, 531
FatI CATG 2 cut(s) 273, 333
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 136, 353, 598, 601
FokI GGATG 1 cut(s) 205
Fsp4HI GCNGC 4 cut(s) 136, 353, 598, 601
FspBI CTAG 1 cut(s) 477
FspI TGCGCA 1 cut(s) 490
GlaI GCGC 2 cut(s) 392, 490
GluI GCNGC 4 cut(s) 136, 353, 598, 601
GsuI CTGGAG 1 cut(s) 321
HaeIII GGCC 3 cut(s) 5, 338, 355
HapII CCGG 2 cut(s) 6, 139
HgaI GACGC 2 cut(s) 409, 527
HhaI GCGC 2 cut(s) 393, 491
Hin1I GRCGYC 2 cut(s) 401, 519
Hin1II CATG 2 cut(s) 277, 337
Hin6I GCGC 2 cut(s) 391, 489
HinP1I GCGC 2 cut(s) 391, 489
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 1 cut(s) 202
HpaII CCGG 2 cut(s) 6, 139
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 4 cut(s) 131, 207, 249, 312
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 2 cut(s) 409, 412
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 3 cut(s) 37, 212, 497
HpyCH4IV ACGT 2 cut(s) 17, 96
HpyCH4V TGCA 3 cut(s) 43, 437, 513
HpySE526I ACGT 2 cut(s) 17, 96
Hsp92I GRCGYC 2 cut(s) 401, 519
Hsp92II CATG 2 cut(s) 277, 337
HspAI GCGC 2 cut(s) 391, 489
LguI GCTCTTC 1 cut(s) 285
LpnPI CCDG 8 cut(s) 19, 152, 281, 285, 298, 499, 508, 535
Lsp1109I GCAGC 3 cut(s) 147, 584, 587
LweI GCATC 1 cut(s) 183
MaeI CTAG 1 cut(s) 477
MaeII ACGT 2 cut(s) 17, 96
MbiI CCGCTC 1 cut(s) 352
MluCI AATT 6 cut(s) 12, 56, 113, 159, 185, 576
MnlI CCTC 3 cut(s) 125, 316, 551
Mph1103I ATGCAT 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 317
MslI CAYNNNNRTG 3 cut(s) 35, 234, 257
MspI CCGG 2 cut(s) 6, 139
MspR9I CCNGG 1 cut(s) 523
MvaI CCWGG 1 cut(s) 523
NlaIII CATG 2 cut(s) 277, 337
NsbI TGCGCA 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 515
NspV TTCGAA 1 cut(s) 117
OliI CACNNNNGTG 2 cut(s) 35, 234
PciSI GCTCTTC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 2 cut(s) 407, 413
PdmI GAANNNNTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 202
PflFI GACNNNGTC 1 cut(s) 403
PkrI GCNGC 4 cut(s) 137, 354, 599, 602
PsiI TTATAA 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 521
PspGI CCWGG 1 cut(s) 521
PsyI GACNNNGTC 1 cut(s) 403
RseI CAYNNNNRTG 3 cut(s) 35, 234, 257
SapI GCTCTTC 1 cut(s) 285
SatI GCNGC 4 cut(s) 136, 353, 598, 601
ScrFI CCNGG 1 cut(s) 523
SetI ASST 5 cut(s) 20, 99, 126, 297, 327
SfaNI GCATC 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 117
SmiMI CAYNNNNRTG 3 cut(s) 35, 234, 257
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 6 cut(s) 12, 56, 113, 159, 185, 576
SsiI CCGC 2 cut(s) 65, 352
SspI AATATT 1 cut(s) 318
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 521
TaaI ACNGT 3 cut(s) 37, 212, 497
TaiI ACGT 2 cut(s) 20, 99
TaqI TCGA 2 cut(s) 117, 321
TasI AATT 6 cut(s) 12, 56, 113, 159, 185, 576
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 1 cut(s) 202
TscAI CASTG 2 cut(s) 42, 217
TseI GCWGC 3 cut(s) 135, 597, 600
TspDTI ATGAA 2 cut(s) 258, 262
TspGWI ACGGA 1 cut(s) 187
TspRI CASTG 2 cut(s) 42, 217
Tth111I GACNNNGTC 1 cut(s) 403
XapI RAATTY 3 cut(s) 56, 113, 576
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 317
XspI CTAG 1 cut(s) 477
Zsp2I ATGCAT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.