Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0020133

Physical Location & Seq

Genomic Coordinates Reverse (-)

18523261 .. 18527583

Gene Structure 4323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26680.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCCTCTGTAAGTGTGGCTCCTGCATCTGGATTAAGAGACCGCAGTGGAAATACAGTTGCTCTCGACAGTTTGCCGAATGAGATGAATGACATGAAAATTAGGGATGACAAGGAAATGGAAGGAACTGTTGTTAATGGTAATAGTACCGAAACAGGTCATATAATTGTCACAACTATTGGTGGAAGAAATGGCCTGCTGAAACAGACAATAAGCTATATGGCTGAGCGTGCTGTTGGACATGGATCTTTTGGATTGGTTTTCCAGGCCAAGTGTTTAGAAACTGGAGAAACTGTTGCTATTAAAAAGGTTCTTCAAGACAAAAGGTACAAGAATCGGGAGTTGCAAACCATGCGTCTTCTAGACCACCCCAACATTGTGTCTCTTAAACATTGTTTCTTTTCCACAACTGAAAAGGATGAGTTATACCTTAACCTTGTTCTTGAGTATGTCCCTGAGACTGTCCATAGAGTGATCAAACATTATAGTAAGATGAACCAGAGGATGCCGCTGATTTATGTTAAACTCTATTCTTACCAGATTTGTAGAGCACTTGCTTACATTCACAACACTATTGGATTGTGCCATAGAGACATAAAGCCTCAGAATTTGTTGGTCAATCCACATACTCACCAGCTTAAAATCTGCGACTTTGGTAGTGCAAAAATCTTGGTAAAGGGGGAACCCAATATTTCTTACATATGTTCAAGATACTATCGAGCACCTGAACTTATATTTGGTGCAACAGAGTATACCACAGCCATTGACATCTGGTCTGCTGGATGTGTTCTCGCTGAACTTCTCCTCGGACAGCCTCTATTTCCTGGGGAAAGTGGAGTAGACCAGCTTGTTGAAATCATTAAGGTTTTAGGCACACCAACGAGGGAGGAAATTAAATGCATGAACCCTAATTATACAGAATTTAAATTCCCCCAAATTAAAGCTCATCCATGGCACAAGATATTCCACAAGCGCATGCCCGCTGAAGCCGTGGATCTCGTATCAAGGCTACTTCAGTACTCTCCAAACCTCAGAAGTACAGCTTTGGAGGCCTTGGTTCATCCCTTCTTTGATGAGTTACGGGACCCTAATACCCGCCTGCCAAATGGACGTTTCCTTCCCCCACTGTTTAATTTCAAGGCTCATGAACTCAAGGGAGTACCTGCAGAGATGATTGTCAAGCTGATCCCAGACCATGCAAGAAAACAGTGTGCCTTCCTTACGTCGATTCCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

413

Amino Acids

46.6

Weight (kDa)

8.81

Isoelectric Point (pI)

35.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 357	4.7e-61	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 276	4.6e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020133)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26680 FvH4_1g26680 FvH4_1g26680 FvH4_1g26680 FvH4_1g26680 FvH4_1g26680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1171
AccI	GTMKAC	2 cut(s)	752, 840
AciI	CCGC	4 cut(s)	43, 509, 981, 1096
AclWI	GGATC	3 cut(s)	253, 1002, 1180
AcsI	RAATTY	3 cut(s)	607, 920, 926
AcuI	CTGAAG	2 cut(s)	998, 1005
AfaI	GTAC	5 cut(s)	148, 329, 1019, 1039, 1161
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	317, 708, 854, 1138
AhdI	GACNNNNNGTC	1 cut(s)	772
AjnI	CCWGG	2 cut(s)	264, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	720, 752
AluBI	AGCT	6 cut(s)	216, 637, 847, 944, 1043, 1183
AluI	AGCT	6 cut(s)	216, 637, 847, 944, 1043, 1183
Alw21I	GWGCWC	2 cut(s)	553, 724
Alw26I	GTCTC	4 cut(s)	33, 387, 452, 585
AlwI	GGATC	3 cut(s)	253, 1002, 1180
AoxI	GGCC	4 cut(s)	3, 193, 267, 1050
ApoI	RAATTY	3 cut(s)	607, 920, 926
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AspLEI	GCGC	1 cut(s)	975
AspS9I	GGNCC	1 cut(s)	1084
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	1084
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	2 cut(s)	553, 724
BceAI	ACGGC	1 cut(s)	974
BciT130I	CCWGG	2 cut(s)	266, 825
BclI	TGATCA	1 cut(s)	474
BcoDI	GTCTC	4 cut(s)	33, 387, 452, 585
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	1164
BfuAI	ACCTGC	1 cut(s)	1171
BisI	GCNGC	1 cut(s)	509
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	510
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	2 cut(s)	266, 825
Bme18I	GGWCC	1 cut(s)	1084
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	1084
BmiI	GGNNCC	4 cut(s)	21, 684, 1085, 1086
BmrFI	CCNGG	2 cut(s)	266, 825
BmsI	GCATC	2 cut(s)	35, 495
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	464, 1136
BsaI	GGTCTC	1 cut(s)	33
BsaJI	CCNNGG	5 cut(s)	805, 824, 950, 990, 1053
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	2 cut(s)	266, 825
BseDI	CCNNGG	5 cut(s)	805, 824, 950, 990, 1053
BseGI	GGATG	6 cut(s)	112, 424, 510, 788, 946, 1060
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	4 cut(s)	216, 447, 617, 1045
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	794
BshFI	GGCC	4 cut(s)	5, 195, 269, 1052
BsiHKAI	GWGCWC	2 cut(s)	553, 724
BslFI	GGGAC	2 cut(s)	437, 1097
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	4 cut(s)	33, 387, 452, 585
BsmFI	GGGAC	2 cut(s)	437, 1097
BsnI	GGCC	4 cut(s)	5, 195, 269, 1052
Bso31I	GGTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	2 cut(s)	553, 724
Bsp143I	GATC	4 cut(s)	245, 474, 994, 1185
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	4 cut(s)	43, 509, 981, 1096
BspANI	GGCC	4 cut(s)	5, 195, 269, 1052
BspCNI	CTCAG	4 cut(s)	217, 448, 616, 1044
BspHI	TCATGA	1 cut(s)	1144
BspLI	GGNNCC	4 cut(s)	21, 684, 1085, 1086
BspMAI	CTGCAG	1 cut(s)	1168
BspMI	ACCTGC	1 cut(s)	1171
BspPI	GGATC	3 cut(s)	253, 1002, 1180
BspTNI	GGTCTC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	5 cut(s)	805, 824, 950, 990, 1053
BssMI	GATC	4 cut(s)	245, 474, 994, 1185
BssNAI	GTATAC	1 cut(s)	753
BssT1I	CCWWGG	2 cut(s)	950, 1053
Bst1107I	GTATAC	1 cut(s)	753
Bst2UI	CCWGG	2 cut(s)	266, 825
Bst4CI	ACNGT	7 cut(s)	58, 71, 130, 295, 463, 1128, 1209
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstC8I	GCNNGC	5 cut(s)	197, 231, 977, 981, 1100
BstDEI	CTNAG	4 cut(s)	225, 456, 603, 1031
BstDSI	CCRYGG	2 cut(s)	950, 990
BstF5I	GGATG	6 cut(s)	112, 424, 510, 788, 946, 1060
BstHHI	GCGC	1 cut(s)	975
BstKTI	GATC	4 cut(s)	248, 477, 997, 1188
BstMAI	GTCTC	4 cut(s)	33, 387, 452, 585
BstMBI	GATC	4 cut(s)	245, 474, 994, 1185
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 352, 1049
BstNI	CCWGG	2 cut(s)	266, 825
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	2 cut(s)	264, 823
BstSFI	CTRYAG	1 cut(s)	1164
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	245, 994
BstYI	RGATCY	2 cut(s)	245, 994
BstZ17I	GTATAC	1 cut(s)	753
BsuRI	GGCC	4 cut(s)	5, 195, 269, 1052
BtgI	CCRYGG	2 cut(s)	950, 990
BtsCI	GGATG	6 cut(s)	112, 424, 510, 788, 946, 1060
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	3 cut(s)	52, 1124, 1214
BveI	ACCTGC	1 cut(s)	1171
Cac8I	GCNNGC	5 cut(s)	197, 231, 977, 981, 1100
CciI	TCATGA	1 cut(s)	1144
CfoI	GCGC	1 cut(s)	975
Cfr13I	GGNCC	1 cut(s)	1084
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	5 cut(s)	147, 328, 1018, 1038, 1160
CspCI	CAANNNNNGTGG	2 cut(s)	745, 780
CviAII	CATG	8 cut(s)	94, 242, 352, 901, 951, 976, 1145, 1196
CviQI	GTAC	5 cut(s)	147, 328, 1018, 1038, 1160
DdeI	CTNAG	4 cut(s)	225, 456, 603, 1031
DpnI	GATC	4 cut(s)	247, 476, 996, 1187
DpnII	GATC	4 cut(s)	245, 474, 994, 1185
DraI	TTTAAA	1 cut(s)	925
DriI	GACNNNNNGTC	1 cut(s)	772
Eam1105I	GACNNNNNGTC	1 cut(s)	772
Eco130I	CCWWGG	2 cut(s)	950, 1053
Eco147I	AGGCCT	1 cut(s)	1052
Eco31I	GGTCTC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	1084
Eco57I	CTGAAG	2 cut(s)	998, 1005
EcoO109I	RGGNCCY	1 cut(s)	1084
EcoRII	CCWGG	2 cut(s)	264, 823
EcoT14I	CCWWGG	2 cut(s)	950, 1053
EcoT22I	ATGCAT	1 cut(s)	902
ErhI	CCWWGG	2 cut(s)	950, 1053
FaeI	CATG	8 cut(s)	97, 245, 355, 904, 954, 979, 1148, 1199
FalI	AAGNNNNNCTT	2 cut(s)	1027, 1059
FaqI	GGGAC	2 cut(s)	437, 1097
FatI	CATG	8 cut(s)	93, 241, 351, 900, 950, 975, 1144, 1195
FauI	CCCGC	2 cut(s)	988, 1103
FauNDI	CATATG	1 cut(s)	701
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	2 cut(s)	752, 840
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	6 cut(s)	119, 431, 517, 795, 933, 1047
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	974
GluI	GCNGC	1 cut(s)	509
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	4 cut(s)	5, 195, 269, 1052
HgaI	GACGC	1 cut(s)	344
HhaI	GCGC	1 cut(s)	975
Hin1II	CATG	8 cut(s)	97, 245, 355, 904, 954, 979, 1148, 1199
Hin6I	GCGC	1 cut(s)	973
HinP1I	GCGC	1 cut(s)	973
HinfI	GANTC	2 cut(s)	334, 1228
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	2 cut(s)	753, 841
Hpy188I	TCNGA	3 cut(s)	606, 809, 1034
Hpy188III	TCNNGA	8 cut(s)	30, 65, 317, 338, 362, 443, 708, 1145
Hpy8I	GTNNAC	2 cut(s)	753, 841
Hpy99I	CGWCG	1 cut(s)	1228
HpyAV	CCTTC	4 cut(s)	116, 1075, 1127, 1225
HpyCH4III	ACNGT	7 cut(s)	58, 71, 130, 295, 463, 1128, 1209
HpyCH4IV	ACGT	2 cut(s)	1111, 1223
HpyCH4V	TGCA	7 cut(s)	26, 346, 662, 743, 900, 1166, 1199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 352, 1049
HpyF3I	CTNAG	4 cut(s)	225, 456, 603, 1031
HpySE526I	ACGT	2 cut(s)	1111, 1223
Hsp92II	CATG	8 cut(s)	97, 245, 355, 904, 954, 979, 1148, 1199
HspAI	GCGC	1 cut(s)	973
KflI	GGGWCCC	1 cut(s)	1084
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	4 cut(s)	245, 474, 994, 1185
LmnI	GCTCC	1 cut(s)	25
LweI	GCATC	2 cut(s)	35, 495
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	1111, 1223
MaeIII	GTNAC	2 cut(s)	169, 1077
MalI	GATC	4 cut(s)	247, 476, 996, 1187
MboI	GATC	4 cut(s)	245, 474, 994, 1185
MboII	GAAGA	3 cut(s)	198, 305, 350
MflI	RGATCY	2 cut(s)	245, 994
MhlI	GDGCHC	2 cut(s)	553, 724
MluCI	AATT	9 cut(s)	99, 165, 607, 891, 910, 920, 926, 936, 1132
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	9 cut(s)	16, 495, 612, 815, 825, 876, 880, 1040, 1042
Mph1103I	ATGCAT	1 cut(s)	902
MspA1I	CMGCKG	2 cut(s)	511, 983
MspR9I	CCNGG	2 cut(s)	266, 825
MvaI	CCWGG	2 cut(s)	266, 825
MwoI	GCNNNNNNNGC	3 cut(s)	230, 352, 1049
NcoI	CCATGG	1 cut(s)	950
NdeI	CATATG	1 cut(s)	701
NdeII	GATC	4 cut(s)	245, 474, 994, 1185
NlaIII	CATG	8 cut(s)	97, 245, 355, 904, 954, 979, 1148, 1199
NlaIV	GGNNCC	4 cut(s)	21, 684, 1085, 1086
NmuCI	GTSAC	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	902
NspI	RCATGY	1 cut(s)	979
PaeI	GCATGC	1 cut(s)	979
PagI	TCATGA	1 cut(s)	1144
PceI	AGGCCT	1 cut(s)	1052
PfeI	GAWTC	2 cut(s)	334, 1228
PkrI	GCNGC	1 cut(s)	510
PpuMI	RGGWCCY	1 cut(s)	1084
Psp5II	RGGWCCY	1 cut(s)	1084
Psp6I	CCWGG	2 cut(s)	264, 823
PspGI	CCWGG	2 cut(s)	264, 823
PspN4I	GGNNCC	4 cut(s)	21, 684, 1085, 1086
PspPI	GGNCC	1 cut(s)	1084
PspPPI	RGGWCCY	1 cut(s)	1084
PstI	CTGCAG	1 cut(s)	1168
PsuI	RGATCY	2 cut(s)	245, 994
RsaI	GTAC	5 cut(s)	148, 329, 1019, 1039, 1161
RsaNI	GTAC	5 cut(s)	147, 328, 1018, 1038, 1160
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	4 cut(s)	245, 474, 994, 1185
Sau96I	GGNCC	1 cut(s)	1084
ScaI	AGTACT	1 cut(s)	1019
ScrFI	CCNGG	2 cut(s)	266, 825
SduI	GDGCHC	2 cut(s)	553, 724
SfaNI	GCATC	2 cut(s)	35, 495
SfcI	CTRYAG	1 cut(s)	1164
SinI	GGWCC	1 cut(s)	1084
SmiI	ATTTAAAT	1 cut(s)	925
SmlI	CTYRAG	2 cut(s)	443, 1151
SmoI	CTYRAG	2 cut(s)	443, 1151
SphI	GCATGC	1 cut(s)	979
Sse9I	AATT	9 cut(s)	99, 165, 607, 891, 910, 920, 926, 936, 1132
SseBI	AGGCCT	1 cut(s)	1052
SsiI	CCGC	4 cut(s)	43, 509, 981, 1096
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	1 cut(s)	362
StuI	AGGCCT	1 cut(s)	1052
StyD4I	CCNGG	2 cut(s)	264, 823
StyI	CCWWGG	2 cut(s)	950, 1053
SwaI	ATTTAAAT	1 cut(s)	925
TaaI	ACNGT	7 cut(s)	58, 71, 130, 295, 463, 1128, 1209
TaiI	ACGT	2 cut(s)	1114, 1226
TaqI	TCGA	3 cut(s)	66, 718, 1226
TasI	AATT	9 cut(s)	99, 165, 607, 891, 910, 920, 926, 936, 1132
TatI	WGTACW	2 cut(s)	1017, 1037
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	2 cut(s)	334, 1228
TscAI	CASTG	3 cut(s)	52, 1131, 1214
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	6 cut(s)	101, 110, 509, 917, 1049, 1161
TspRI	CASTG	3 cut(s)	52, 1131, 1214
VpaK11BI	GGWCC	1 cut(s)	1084
XapI	RAATTY	3 cut(s)	607, 920, 926
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	979
XmiI	GTMKAC	2 cut(s)	752, 840
XspI	CTAG	1 cut(s)	362
ZrmI	AGTACT	1 cut(s)	1019
Zsp2I	ATGCAT	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.