FvH4_2g01140

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
1068288 .. 1069600
1313 bp
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UTR
Exon/CDS
Intron
FvH4_2g01140.t5

Sequence Viewer

Length: 222 bp
ATGCGGAAGAGATTCGCGAGCATTTCAACATCAGGAATGACTATACTCCAGAGGAAGAAGAGGAGGTTCGGAGGGAGAATCAGTGGGCATTTGAGGAGTATGAAGAACCACCAGCGGTCAATGAGGATTCTGAGTGAAATCGGGGGCTGTGTATTTGGTGTCGATAATGTGAATGGTAGGGATGTTGATATAACTAGGGCCGTTCATTGTTCCCCATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.26

Weight (kDa)

11.77

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020284)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 4, 115
AgsI TTSAA 1 cut(s) 27
AoxI GGCC 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 198
BceAI ACGGC 1 cut(s) 185
BfaI CTAG 2 cut(s) 195, 220
BmgT120I GGNCC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 32
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
BseGI GGATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 2 cut(s) 76, 109
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 200
BsnI GGCC 1 cut(s) 200
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 2 cut(s) 4, 115
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 2, 53
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 17
BstUI CGCG 1 cut(s) 17
BsuRI GGCC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 88
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 198
CviJI RGCY 2 cut(s) 147, 200
CviKI_1 RGCY 2 cut(s) 147, 200
DdeI CTNAG 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 2, 53
EarI CTCTTC 2 cut(s) 2, 53
FaiI YATR 3 cut(s) 44, 101, 191
FokI GGATG 1 cut(s) 194
FspBI CTAG 2 cut(s) 195, 220
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 1 cut(s) 200
HinfI GANTC 3 cut(s) 12, 78, 127
Hpy188I TCNGA 2 cut(s) 71, 132
Hpy188III TCNNGA 3 cut(s) 16, 33, 49
HpyF3I CTNAG 1 cut(s) 131
LpnPI CCDG 3 cut(s) 18, 62, 125
MaeI CTAG 2 cut(s) 195, 220
MboII GAAGA 4 cut(s) 19, 67, 70, 115
MnlI CCTC 6 cut(s) 45, 54, 57, 65, 87, 117
MroXI GAANNNNTTC 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 115
MvnI CGCG 1 cut(s) 17
NruI TCGCGA 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 3 cut(s) 12, 78, 127
PspPI GGNCC 1 cut(s) 198
RruI TCGCGA 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 198
SetI ASST 1 cut(s) 68
SgeI CNNG 7 cut(s) 28, 30, 45, 61, 124, 154, 207
SsiI CCGC 2 cut(s) 4, 115
SspMI CTAG 2 cut(s) 195, 220
TaqI TCGA 1 cut(s) 162
TfiI GAWTC 3 cut(s) 12, 78, 127
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 116, 194
TspRI CASTG 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 2 cut(s) 195, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.