FvH4_2g01840
HSP70 Family

Heat shock cognate 70 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0022150
Physical Location & Seq
Reverse (-)
1587560 .. 1587883
324 bp
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UTR
Exon/CDS
Intron
FvH4_2g01840.t1

Sequence Viewer

Length: 324 bp
ATGAACGTTATACTTATCATCAATGAGTCAACAACTGCAGCAATTGCATTTGATCTTGATAAAAAAGGCGCTGGTGGGGAGAATGTTCTCATATTCGATCTTGGTGGCGGTACCTTTGATGTTTTCATTCTTAAAATTGAAGATAAGATTTTTAAAGTGAGAGCTACTGATGGAGATACCCATCTTGTAGGTGAAGATTTTGACAATAGAATGGTGAACTATTTTGTACAAGAGATTGTGAAGAGACACCAGAAGGACATCAACAAAAACCCTAAACCATTGAGAAGATTAAGATCGTATTGTAAGAGCATAGGCACCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

108

Amino Acids

12.02

Weight (kDa)

7.85

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 1 - 102 1.3e-33 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022150)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g01840
rosa_chinensis RchiOBHm_Chr6g0244991 RchiOBHm_Chr6g0245031
rosa_multiflora Rmu_ssc0000087.1_g000032

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 110
AccB1I GGYRCC 2 cut(s) 110, 314
AciI CCGC 1 cut(s) 108
AclI AACGTT 1 cut(s) 6
AfaI GTAC 2 cut(s) 112, 228
AgeI ACCGGT 1 cut(s) 317
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 317
Asp718I GGTACC 1 cut(s) 110
AspLEI GCGC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 203, 226
BanI GGYRCC 2 cut(s) 110, 314
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 164, 189
BcoDI GTCTC 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 112, 316
BsaBI GATNNNNATC 2 cut(s) 180, 292
BsaWI WCCGGW 1 cut(s) 317
Bse118I RCCGGY 1 cut(s) 317
Bse8I GATNNNNATC 2 cut(s) 180, 292
BseJI GATNNNNATC 2 cut(s) 180, 292
BseXI GCAGC 1 cut(s) 50
BshNI GGYRCC 2 cut(s) 110, 314
BshTI ACCGGT 1 cut(s) 317
BsiSI CCGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 238
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 3 cut(s) 52, 97, 293
BspACI CCGC 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 112, 316
BspMAI CTGCAG 1 cut(s) 40
BspT107I GGYRCC 2 cut(s) 110, 314
BsrFI RCCGGY 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 317
BssMI GATC 3 cut(s) 52, 97, 293
Bst6I CTCTTC 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 3 cut(s) 55, 100, 296
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 3 cut(s) 52, 97, 293
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 1 cut(s) 317
Csp6I GTAC 2 cut(s) 111, 227
CspAI ACCGGT 1 cut(s) 317
CviJI RGCY 1 cut(s) 164
CviKI_1 RGCY 1 cut(s) 164
CviQI GTAC 2 cut(s) 111, 227
DpnI GATC 3 cut(s) 54, 99, 295
DpnII GATC 3 cut(s) 52, 97, 293
DraI TTTAAA 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
FaiI YATR 3 cut(s) 11, 92, 311
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 39
HaeII RGCGCY 1 cut(s) 72
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 318
HphI GGTGA 2 cut(s) 203, 226
Hpy166II GTNNAC 2 cut(s) 30, 217
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 2 cut(s) 30, 217
HpyAV CCTTC 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 38, 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 6
HspAI GCGC 1 cut(s) 69
KpnI GGTACC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 52, 97, 293
LpnPI CCDG 2 cut(s) 57, 263
Lsp1109I GCAGC 1 cut(s) 50
MaeII ACGT 1 cut(s) 6
MalI GATC 3 cut(s) 54, 99, 295
MboI GATC 3 cut(s) 52, 97, 293
MboII GAAGA 4 cut(s) 152, 206, 253, 297
MfeI CAATTG 1 cut(s) 42
MluCI AATT 2 cut(s) 42, 135
MlyI GAGTC 1 cut(s) 35
MseI TTAA 4 cut(s) 132, 153, 290, 322
MspI CCGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 3 cut(s) 52, 97, 293
NlaIV GGNNCC 2 cut(s) 112, 316
PinAI ACCGGT 1 cut(s) 317
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp1406I AACGTT 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 112, 316
PstI CTGCAG 1 cut(s) 40
RsaI GTAC 2 cut(s) 112, 228
RsaNI GTAC 2 cut(s) 111, 227
SaqAI TTAA 4 cut(s) 132, 153, 290, 322
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 52, 97, 293
SchI GAGTC 1 cut(s) 35
SetI ASST 4 cut(s) 9, 116, 166, 193
SfcI CTRYAG 1 cut(s) 36
SgeI CNNG 6 cut(s) 68, 84, 113, 197, 242, 262
Sse9I AATT 2 cut(s) 42, 135
SsiI CCGC 1 cut(s) 108
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 42, 135
TatI WGTACW 1 cut(s) 226
Tru1I TTAA 4 cut(s) 132, 153, 290, 322
Tru9I TTAA 4 cut(s) 132, 153, 290, 322
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 17, 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.