Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0024049

Physical Location & Seq

Genomic Coordinates Reverse (-)

24753627 .. 24758890

Gene Structure 5264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32761.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACCTCCTATTACAGAAGAGAATCACTCTGTGATGTTTCTTACCTAGTGTTGGATGAGGCTGATTGTATGCTGGACATGGGTTTTGGACCGCAAATAAGGAAGATTGTGACGCAGAGACCTTCTGACTGTCAGACCTTTATGTATACAGCAACGCTGTCCAAGGAAGTTAGGACGATTGCATCAGATCTACTGGGCAAGTCCGTCCAGGTGAACATTGGCAATGTTAATGAACTTGTCGCGAATAAGTCGATCACACAGCATGTTGAAGTACTGATGTCGATGGAGAAAGACAGACGATTGGAACAAATACTGCGATCGCAAGAGCCAGGGTCCAAGATAATTATATTTTGTTCAGCCAAAGATACGTGCAATCATCTTTCTTGTACCCTAAACCGCCAATTTGGAGCTGCTGCAATTCATGGTGACAAATCTCTGGCTGAGAGGGATCGTGTCCTGAGTCAATTTCGCACAGGGAGGAAGCCAGTTCTTATAGCAACTGATGTCGCAGCTCGAGGATTGGATGTTGAGGACATAAGGGTGGTTATCAATTACAACTTCCCTACTGTAGTCCCATATTATGTTCACGGAATTGAGAGAACTGGAAGGGCAGGTGGCACTGGGTTGGCTTACACGTTCTTAGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

217

Amino Acids

24.09

Weight (kDa)

8.2

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	7 - 59	5.6e-12	DEAD/DEAH box helicase
Helicase_C	PF00271	97 - 205	1.2e-27	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024049)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32761 FvH4_2g32761
pyrus_communis	pycom111g02380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	602
Acc36I	ACCTGC	1 cut(s)	602
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	242
AciI	CCGC	2 cut(s)	92, 397
AclWI	GGATC	1 cut(s)	456
AdeI	CACNNNGTG	1 cut(s)	32
AfaI	GTAC	2 cut(s)	273, 388
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	633
AgsI	TTSAA	1 cut(s)	269
AjnI	CCWGG	2 cut(s)	207, 328
AluBI	AGCT	2 cut(s)	410, 512
AluI	AGCT	2 cut(s)	410, 512
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	456
Ama87I	CYCGRG	1 cut(s)	513
ApeKI	GCWGC	3 cut(s)	410, 413, 509
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AsiSI	GCGATCGC	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	89, 333
AsuHPI	GGTGA	2 cut(s)	223, 437
AvaI	CYCGRG	1 cut(s)	513
AvaII	GGWCC	2 cut(s)	89, 333
BbvI	GCAGC	3 cut(s)	397, 400, 521
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	209, 330
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	602
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	3 cut(s)	411, 414, 510
BlsI	GCNGC	3 cut(s)	412, 415, 511
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	2 cut(s)	209, 330
Bme18I	GGWCC	2 cut(s)	89, 333
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	89, 333
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	2 cut(s)	209, 330
BmrI	ACTGGG	2 cut(s)	203, 630
BmsI	GCATC	1 cut(s)	191
BmuI	ACTGGG	2 cut(s)	203, 630
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BsaAI	YACGTR	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	162, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	4 cut(s)	198, 485, 607, 625
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	209, 330
BseDI	CCNNGG	2 cut(s)	162, 329
BseGI	GGATG	2 cut(s)	61, 529
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	432, 449
BseNI	ACTGG	4 cut(s)	198, 485, 607, 625
BseXI	GCAGC	3 cut(s)	397, 400, 521
Bsh1236I	CGCG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	320
BsiEI	CGRYCG	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	557
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	187, 252, 317, 448
Bsp68I	TCGCGA	1 cut(s)	242
BspACI	CCGC	2 cut(s)	92, 397
BspCNI	CTCAG	2 cut(s)	433, 450
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	4 cut(s)	198, 485, 607, 625
BssECI	CCNNGG	2 cut(s)	162, 329
BssMI	GATC	4 cut(s)	187, 252, 317, 448
BssNAI	GTATAC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	162
Bst1107I	GTATAC	1 cut(s)	147
Bst2UI	CCWGG	2 cut(s)	209, 330
Bst4CI	ACNGT	2 cut(s)	131, 568
Bst6I	CTCTTC	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	369
BstDEI	CTNAG	3 cut(s)	441, 458, 640
BstF5I	GGATG	2 cut(s)	61, 529
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	4 cut(s)	190, 255, 320, 451
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	4 cut(s)	187, 252, 317, 448
BstMCI	CGRYCG	1 cut(s)	320
BstNI	CCWGG	2 cut(s)	209, 330
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	207, 328
BstSFI	CTRYAG	1 cut(s)	567
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	3 cut(s)	397, 400, 521
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BstZ17I	GTATAC	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	61, 529
BtsIMutI	CAGTG	1 cut(s)	618
BtuMI	TCGCGA	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	602
Cfr13I	GGNCC	2 cut(s)	89, 333
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	272, 387
CviAII	CATG	3 cut(s)	79, 263, 422
CviJI	RGCY	8 cut(s)	62, 328, 359, 410, 440, 484, 512, 629
CviKI_1	RGCY	8 cut(s)	62, 328, 359, 410, 440, 484, 512, 629
CviQI	GTAC	2 cut(s)	272, 387
DdeI	CTNAG	3 cut(s)	441, 458, 640
DpnI	GATC	4 cut(s)	189, 254, 319, 450
DpnII	GATC	4 cut(s)	187, 252, 317, 448
DraIII	CACNNNGTG	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	2 cut(s)	89, 333
Eco88I	CYCGRG	1 cut(s)	513
EcoRII	CCWGG	2 cut(s)	207, 328
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	3 cut(s)	82, 266, 425
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	3 cut(s)	78, 262, 421
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	3 cut(s)	411, 414, 510
FokI	GGATG	2 cut(s)	68, 536
Fsp4HI	GCNGC	3 cut(s)	411, 414, 510
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	3 cut(s)	411, 414, 510
HgaI	GACGC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	82, 266, 425
HinfI	GANTC	2 cut(s)	23, 460
HphI	GGTGA	2 cut(s)	223, 437
Hpy166II	GTNNAC	3 cut(s)	147, 214, 586
Hpy188I	TCNGA	3 cut(s)	127, 135, 187
Hpy188III	TCNNGA	2 cut(s)	241, 457
Hpy8I	GTNNAC	3 cut(s)	147, 214, 586
HpyAV	CCTTC	2 cut(s)	132, 600
HpyCH4III	ACNGT	2 cut(s)	131, 568
HpyCH4IV	ACGT	2 cut(s)	368, 635
HpyCH4V	TGCA	3 cut(s)	182, 372, 416
HpyF3I	CTNAG	3 cut(s)	441, 458, 640
HpySE526I	ACGT	2 cut(s)	368, 635
Hsp92II	CATG	3 cut(s)	82, 266, 425
Kzo9I	GATC	4 cut(s)	187, 252, 317, 448
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	3 cut(s)	397, 400, 521
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	2 cut(s)	368, 635
MaeIII	GTNAC	2 cut(s)	109, 425
MalI	GATC	4 cut(s)	189, 254, 319, 450
MboI	GATC	4 cut(s)	187, 252, 317, 448
MboII	GAAGA	2 cut(s)	30, 115
MflI	RGATCY	1 cut(s)	187
MluCI	AATT	7 cut(s)	342, 401, 417, 464, 550, 591, 646
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	16, 52, 438, 471, 509, 523
MseI	TTAA	2 cut(s)	228, 649
MslI	CAYNNNNRTG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	209, 330
MvaI	CCWGG	2 cut(s)	209, 330
MvnI	CGCG	1 cut(s)	242
NdeII	GATC	4 cut(s)	187, 252, 317, 448
NlaIII	CATG	3 cut(s)	82, 266, 425
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	109, 425
NruI	TCGCGA	1 cut(s)	242
NspI	RCATGY	1 cut(s)	266
PaeR7I	CTCGAG	1 cut(s)	513
PaqCI	CACCTGC	1 cut(s)	602
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	412, 415, 511
Ple19I	CGATCG	1 cut(s)	320
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
Ppu21I	YACGTR	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	207, 328
PspGI	CCWGG	2 cut(s)	207, 328
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	89, 333
PspXI	VCTCGAGB	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	320
RgaI	GCGATCGC	1 cut(s)	320
RruI	TCGCGA	1 cut(s)	242
RsaI	GTAC	2 cut(s)	273, 388
RsaNI	GTAC	2 cut(s)	272, 387
RseI	CAYNNNNRTG	1 cut(s)	539
SaqAI	TTAA	2 cut(s)	228, 649
SatI	GCNGC	3 cut(s)	411, 414, 510
Sau3AI	GATC	4 cut(s)	187, 252, 317, 448
Sau96I	GGNCC	2 cut(s)	89, 333
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	209, 330
SfaAI	GCGATCGC	1 cut(s)	320
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	1 cut(s)	567
Sfr274I	CTCGAG	1 cut(s)	513
SgfI	GCGATCGC	1 cut(s)	320
SinI	GGWCC	2 cut(s)	89, 333
SlaI	CTCGAG	1 cut(s)	513
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	7 cut(s)	342, 401, 417, 464, 550, 591, 646
SsiI	CCGC	2 cut(s)	92, 397
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	207, 328
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	131, 568
TaiI	ACGT	2 cut(s)	371, 638
TaqI	TCGA	3 cut(s)	251, 281, 514
TasI	AATT	7 cut(s)	342, 401, 417, 464, 550, 591, 646
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	228, 649
Tru9I	TTAA	2 cut(s)	228, 649
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	2 cut(s)	109, 425
TseI	GCWGC	3 cut(s)	410, 413, 509
Tsp45I	GTSAC	2 cut(s)	109, 425
TspDTI	ATGAA	2 cut(s)	246, 410
TspGWI	ACGGA	2 cut(s)	193, 603
TspRI	CASTG	1 cut(s)	625
VpaK11BI	GGWCC	2 cut(s)	89, 333
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XhoI	CTCGAG	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	1 cut(s)	47
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.