FvH4_3g45670

Belongs to the peptidase C2 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
37850469 .. 37851905
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45670.t1

Sequence Viewer

Length: 975 bp
ATGGACGAGTTGTGGGTCTCTTTACTGGAGAAGGCATATGCCAAATTGCATTGCTCCTATGAACCTTTAGAAGGTGGACTTGTCCAAGATGCTCTTGTAGACCTCACTGGAGGTGCGGGGGAAGAGATTGACATGAGGAGTGCTCAGGCCCAAATTGATCTTGCGAGTGGTCGATTATGGTCTCAGTTGTTGCGCTTCAAACAAGAGGTATTTCTTCTGGGTGCTGGAAGTCCATCTGGTTCAGATGTACATGTTTCCTCCAGTGGCATTGTCCAAGGTCATGCTTACGCATTATTGCAGGTGGATGGTCACAAGCTTATTCAGATTCGGAATCCGTGGGCCAATGAAGTTGAGTGGAATGGCCCTTGGTCTGACTCATCGCCTGAATGGACTGATAGGATGAAGCACAAGCTGAAGCATATTCCACAGTCAAAAGATGGCATATTCTGGATGTCCTGGCAAGACTTCCAAATTCATTTTCGATCAATATATGTTTGCCGTATCTATCCCCCGGAGATGCGCTACTCTGTTCACGGCCAATGGCGAAGTTATAGTGCTGGTGGCTGCCAAGACTACGAGACATGGCATCAAAATCCACAATTCCGATTGCGGGCCACAGGGCCAGATGCCTCATTTCCAATTCATGTATTCATTACATTGACACAGGGTGTGAGCTTCTCAAGAACAGTTGCTGGTTTCAGAAACTATCAATCCAGCCATGATTCAATGATGTTCTATATTGGGATGAGGATACTCAAAACCCGAGGCCGCCGAGCTGCTTACAATATATACCTACATGAATCAGTGGGTGGGACAGATTATGTTAATTCACGAGAAATATCGTGTGAAATGGTTTTGGATCCAGATCCAAAAGGTTACACAATAGTCCCAACAACTATACACCCTGGCGAAGAAGCTCCATTTGTTCTTTCTGTTTTTACAAAAGCATCAATAACCTTGGAAGCCTTGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001558 GO:0001708 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004198 GO:0005198 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0005887 GO:0006275 GO:0006355 GO:0006508 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007204 GO:0007275 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008307 GO:0009628 GO:0009651 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009934 GO:0009966 GO:0009987 GO:0010008 GO:0010035 GO:0010038 GO:0010154 GO:0010468 GO:0010522 GO:0010524 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010927 GO:0010941 GO:0010959 GO:0012505 GO:0014717 GO:0014718 GO:0014823 GO:0014850 GO:0016020 GO:0016021 GO:0016043 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030036 GO:0030154 GO:0030162 GO:0030234 GO:0030239 GO:0030315 GO:0031032 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031402 GO:0031410 GO:0031420 GO:0031432 GO:0031674 GO:0031982 GO:0031984 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032875 GO:0032877 GO:0032879 GO:0032947 GO:0032989 GO:0032991 GO:0033036 GO:0033233 GO:0033234 GO:0033554 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0040008 GO:0042127 GO:0042175 GO:0042221 GO:0042383 GO:0042592 GO:0042692 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043122 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043269 GO:0043270 GO:0043292 GO:0043415 GO:0043416 GO:0043933 GO:0044085 GO:0044093 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044449 GO:0044459 GO:0044464 GO:0045165 GO:0045214 GO:0045740 GO:0045787 GO:0045862 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0046872 GO:0048316 GO:0048468 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048638 GO:0048639 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050801 GO:0050865 GO:0050867 GO:0050896 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051090 GO:0051091 GO:0051092 GO:0051094 GO:0051128 GO:0051146 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051279 GO:0051281 GO:0051282 GO:0051480 GO:0051592 GO:0051641 GO:0051716 GO:0051726 GO:0051924 GO:0051928 GO:0055001 GO:0055002 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055103 GO:0060255 GO:0060341 GO:0060548 GO:0061041 GO:0061061 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070011 GO:0070727 GO:0070887 GO:0070925 GO:0071214 GO:0071241 GO:0071248 GO:0071277 GO:0071470 GO:0071472 GO:0071704 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072657 GO:0080050 GO:0080090 GO:0080134 GO:0090068 GO:0090303 GO:0090329 GO:0090392 GO:0090627 GO:0090628 GO:0097264 GO:0097435 GO:0097708 GO:0098588 GO:0098771 GO:0098772 GO:0098805 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0104004 GO:0140096 GO:1901564 GO:1902531 GO:1902679 GO:1902680 GO:1903034 GO:1903036 GO:1903169 GO:1903320 GO:1903321 GO:1903506 GO:1903507 GO:1903508 GO:1904062 GO:1904064 GO:1904427 GO:2000011 GO:2000014 GO:2000024 GO:2000026 GO:2000105 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

325

Amino Acids

36.72

Weight (kDa)

6.15

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C2 PF00648 2 - 167 2.1e-44 Calpain family cysteine protease
Calpain_III PF01067 178 - 313 5.2e-17 Calpain large subunit, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0027867)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g45670
pyrus_communis pycom11g00330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 289
Acc36I ACCTGC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 99
AciI CCGC 3 cut(s) 116, 610, 769
AclWI GGATC 3 cut(s) 854, 860, 867
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 434
AdeI CACNNNGTG 1 cut(s) 668
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 71, 610
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 199, 726
AjnI CCWGG 2 cut(s) 455, 904
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AluBI AGCT 5 cut(s) 316, 412, 675, 776, 917
AluI AGCT 5 cut(s) 316, 412, 675, 776, 917
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 3 cut(s) 22, 186, 572
AlwI GGATC 3 cut(s) 854, 860, 867
AlwNI CAGNNNCTG 1 cut(s) 692
Ama87I CYCGRG 1 cut(s) 762
AoxI GGCC 7 cut(s) 147, 339, 361, 535, 612, 620, 766
ApeKI GCWGC 2 cut(s) 564, 776
ApoI RAATTY 1 cut(s) 471
AspLEI GCGC 2 cut(s) 195, 522
AspS9I GGNCC 5 cut(s) 148, 339, 362, 612, 620
AsuC2I CCSGG 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 762
BamHI GGATCC 1 cut(s) 859
BauI CACGAG 1 cut(s) 831
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 551, 763
BccI CCATC 3 cut(s) 241, 299, 431
BceAI ACGGC 2 cut(s) 483, 550
BciT130I CCWGG 2 cut(s) 457, 906
BciVI GTATCC 1 cut(s) 744
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 3 cut(s) 22, 186, 572
BfuAI ACCTGC 1 cut(s) 289
BfuI GTATCC 1 cut(s) 744
BisI GCNGC 3 cut(s) 565, 769, 777
BlsI GCNGC 3 cut(s) 566, 770, 778
Bme1390I CCNGG 3 cut(s) 457, 512, 906
BmeT110I CYCGRG 1 cut(s) 762
BmgT120I GGNCC 5 cut(s) 148, 339, 362, 612, 620
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 3 cut(s) 457, 512, 906
BmsI GCATC 5 cut(s) 79, 507, 595, 616, 956
BplI GAGNNNNNCTC 2 cut(s) 127, 159
BpmI CTGGAG 3 cut(s) 47, 129, 244
Bpu10I CCTNAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 664
BpuMI CCSGG 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 864
BsaI GGTCTC 2 cut(s) 22, 186
BsaJI CCNNGG 7 cut(s) 274, 335, 365, 510, 763, 904, 957
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 610
Bse1I ACTGG 3 cut(s) 30, 112, 261
Bse3DI GCAATG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 864
BseBI CCWGG 2 cut(s) 457, 906
BseDI CCNNGG 7 cut(s) 274, 335, 365, 510, 763, 904, 957
BseGI GGATG 4 cut(s) 310, 405, 456, 750
BseJI GATNNNNATC 1 cut(s) 864
BseLI CCNNNNNNNGG 2 cut(s) 71, 610
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 158, 197
BseNI ACTGG 3 cut(s) 30, 112, 261
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 551, 763
BshFI GGCC 7 cut(s) 149, 341, 363, 537, 614, 622, 768
BsiHKAI GWGCWC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 762
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 2 cut(s) 826, 872
BslI CCNNNNNNNGG 2 cut(s) 71, 610
BsmAI GTCTC 3 cut(s) 22, 186, 572
BsmFI GGGAC 2 cut(s) 826, 872
BsnI GGCC 7 cut(s) 149, 341, 363, 537, 614, 622, 768
Bso31I GGTCTC 2 cut(s) 22, 186
BsoBI CYCGRG 1 cut(s) 762
Bsp1286I GDGCHC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 4 cut(s) 157, 482, 859, 865
BspACI CCGC 3 cut(s) 116, 610, 769
BspANI GGCC 7 cut(s) 149, 341, 363, 537, 614, 622, 768
BspCNI CTCAG 2 cut(s) 157, 196
BspLI GGNNCC 1 cut(s) 861
BspMI ACCTGC 1 cut(s) 289
BspPI GGATC 3 cut(s) 854, 860, 867
BspTNI GGTCTC 2 cut(s) 22, 186
BsrDI GCAATG 1 cut(s) 49
BsrGI TGTACA 1 cut(s) 247
BsrI ACTGG 3 cut(s) 30, 112, 261
BssECI CCNNGG 7 cut(s) 274, 335, 365, 510, 763, 904, 957
BssMI GATC 4 cut(s) 157, 482, 859, 865
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 3 cut(s) 274, 365, 957
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 457, 906
Bst4CI ACNGT 2 cut(s) 429, 688
Bst6I CTCTTC 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 2 cut(s) 144, 183
BstDSI CCRYGG 1 cut(s) 335
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 4 cut(s) 310, 405, 456, 750
BstHHI GCGC 2 cut(s) 195, 522
BstKTI GATC 4 cut(s) 160, 485, 862, 868
BstMAI GTCTC 3 cut(s) 22, 186, 572
BstMBI GATC 4 cut(s) 157, 482, 859, 865
BstNI CCWGG 2 cut(s) 457, 906
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 3 cut(s) 455, 510, 904
BstV1I GCAGC 2 cut(s) 551, 763
BstX2I RGATCY 2 cut(s) 859, 865
BstYI RGATCY 2 cut(s) 859, 865
BsuI GTATCC 1 cut(s) 744
BsuRI GGCC 7 cut(s) 149, 341, 363, 537, 614, 622, 768
BtgI CCRYGG 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 4 cut(s) 310, 405, 456, 750
BtsIMutI CAGTG 4 cut(s) 105, 268, 810, 970
BveI ACCTGC 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 612
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 2 cut(s) 195, 522
Cfr13I GGNCC 5 cut(s) 148, 339, 362, 612, 620
Csp6I GTAC 1 cut(s) 248
CviAII CATG 7 cut(s) 133, 251, 281, 582, 644, 719, 797
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 2 cut(s) 144, 183
DpnI GATC 4 cut(s) 159, 484, 861, 867
DpnII GATC 4 cut(s) 157, 482, 859, 865
DraIII CACNNNGTG 1 cut(s) 668
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 3 cut(s) 274, 365, 957
Eco31I GGTCTC 2 cut(s) 22, 186
Eco57I CTGAAG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 762
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 455, 904
EcoT14I CCWWGG 3 cut(s) 274, 365, 957
ErhI CCWWGG 3 cut(s) 274, 365, 957
FaeI CATG 7 cut(s) 136, 254, 284, 585, 647, 722, 800
FalI AAGNNNNNCTT 4 cut(s) 63, 95, 78, 110
FaqI GGGAC 2 cut(s) 826, 872
FatI CATG 7 cut(s) 132, 250, 280, 581, 643, 718, 796
FauI CCCGC 2 cut(s) 109, 603
FauNDI CATATG 1 cut(s) 37
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 565, 769, 777
FokI GGATG 4 cut(s) 317, 412, 463, 757
Fsp4HI GCNGC 3 cut(s) 565, 769, 777
GlaI GCGC 2 cut(s) 194, 521
GluI GCNGC 3 cut(s) 565, 769, 777
GsuI CTGGAG 3 cut(s) 47, 129, 244
HaeIII GGCC 7 cut(s) 149, 341, 363, 537, 614, 622, 768
HapII CCGG 1 cut(s) 512
HhaI GCGC 2 cut(s) 195, 522
Hin1II CATG 7 cut(s) 136, 254, 284, 585, 647, 722, 800
Hin6I GCGC 2 cut(s) 193, 520
HinP1I GCGC 2 cut(s) 193, 520
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 5 cut(s) 325, 331, 374, 722, 800
HpaII CCGG 1 cut(s) 512
Hpy166II GTNNAC 3 cut(s) 77, 100, 532
Hpy188I TCNGA 6 cut(s) 244, 324, 330, 373, 605, 701
Hpy188III TCNNGA 4 cut(s) 448, 681, 831, 863
Hpy8I GTNNAC 3 cut(s) 77, 100, 532
HpyAV CCTTC 2 cut(s) 25, 65
HpyCH4III ACNGT 2 cut(s) 429, 688
HpyCH4V TGCA 3 cut(s) 49, 298, 970
HpyF3I CTNAG 2 cut(s) 144, 183
Hsp92II CATG 7 cut(s) 136, 254, 284, 585, 647, 722, 800
HspAI GCGC 2 cut(s) 193, 520
Kzo9I GATC 4 cut(s) 157, 482, 859, 865
LmnI GCTCC 2 cut(s) 59, 922
Lsp1109I GCAGC 2 cut(s) 551, 763
LweI GCATC 5 cut(s) 79, 507, 595, 616, 956
MaeIII GTNAC 2 cut(s) 308, 875
MalI GATC 4 cut(s) 159, 484, 861, 867
MboI GATC 4 cut(s) 157, 482, 859, 865
MboII GAAGA 3 cut(s) 134, 206, 923
MflI RGATCY 2 cut(s) 859, 865
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 6 cut(s) 44, 153, 471, 599, 639, 826
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 8 cut(s) 104, 113, 129, 199, 268, 640, 741, 758
MseI TTAA 1 cut(s) 825
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 3 cut(s) 457, 512, 906
MvaI CCWGG 2 cut(s) 457, 906
NciI CCSGG 1 cut(s) 512
NdeI CATATG 1 cut(s) 37
NdeII GATC 4 cut(s) 157, 482, 859, 865
NlaIII CATG 7 cut(s) 136, 254, 284, 585, 647, 722, 800
NlaIV GGNNCC 1 cut(s) 861
NmeAIII GCCGAG 1 cut(s) 797
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 254
PaqCI CACCTGC 1 cut(s) 289
PciI ACATGT 1 cut(s) 250
PfeI GAWTC 4 cut(s) 325, 331, 722, 800
PkrI GCNGC 3 cut(s) 566, 770, 778
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PscI ACATGT 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 455, 904
PspGI CCWGG 2 cut(s) 455, 904
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 5 cut(s) 148, 339, 362, 612, 620
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 2 cut(s) 859, 865
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 3 cut(s) 565, 769, 777
Sau3AI GATC 4 cut(s) 157, 482, 859, 865
Sau96I GGNCC 5 cut(s) 148, 339, 362, 612, 620
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 457, 512, 906
SduI GDGCHC 1 cut(s) 145
SfaNI GCATC 5 cut(s) 79, 507, 595, 616, 956
SmlI CTYRAG 1 cut(s) 679
SmoI CTYRAG 1 cut(s) 679
Sse9I AATT 6 cut(s) 44, 153, 471, 599, 639, 826
SsiI CCGC 3 cut(s) 116, 610, 769
StyD4I CCNGG 3 cut(s) 455, 510, 904
StyI CCWWGG 3 cut(s) 274, 365, 957
TaaI ACNGT 2 cut(s) 429, 688
TaqI TCGA 2 cut(s) 172, 481
TasI AATT 6 cut(s) 44, 153, 471, 599, 639, 826
TatI WGTACW 1 cut(s) 247
TauI GCSGC 1 cut(s) 771
TfiI GAWTC 4 cut(s) 325, 331, 722, 800
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 3 cut(s) 112, 268, 810
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 2 cut(s) 564, 776
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 7 cut(s) 75, 360, 416, 464, 632, 640, 813
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 3 cut(s) 112, 268, 810
XagI CCTNNNNNAGG 1 cut(s) 69
XapI RAATTY 1 cut(s) 471
XceI RCATGY 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.