Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0027873

Physical Location & Seq

Genomic Coordinates Reverse (-)

773269 .. 776373

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00892.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAAGATCCAGACTATTATCACGATCAGTCTAGTCCTCAACGAGTTGAGATTCCACCACTGAAGCCGCTTCTAACGGCTGTGAAGTTGTCACTGAAAGAGACTTTCTTTTCTGACGATCCTTTGAGAAGATTTAAGAACCAACCTGCATCCAAAAAAGCAATTCTGGGTTTGCAGTACTTCTTTACGATCCTCGAGTGGGCTCCTCGTTACAATTTGGGTTACCTCAAGTCTGATCTTATTGCTGGAGTCACCATTGCCAGTCTCGCAGTTCCTCAAGGGATCAGCTATGCGACCTTGGCTAACATGCCGCCAATCATTGGCATATATATGAGTTTTGTACCTCCACTTGTGTATGCAATTCTCGGAACCTCAAGGCATATTGCAATTGGACCGACGGTTGTTTCATTGGTTCTGCTAGCTAATACCTTGTCGGAGGAAGTTAGCCCTACTGAAAACCCTGAACTCTATCTCCAGATGGCTCTCACCTCCACCTTTTTTGCTGGAATTTTTCAGGCTTGCCTTGGCTTCTTAAGGCTTGGTTTTGTGGTGGACTTTCTTTCTCATGCAACAATAATGGGTTTTATGGGTGGAGTAGCCATTACTGTGAGTCTGCAACAACTTAAAGCGCTGTTAGGGATAACACAATTCACTCGAAAATCAGATGTTGTCTCTGTCCTCGTATCGGTCTTTACCCAATTGCACGAGGTGACTGGTGGATTGCTTGAGGAATCAATGGAAGCTCTAACAATTTCAGAAGCTGGAAGTTATAGGCTTATAGCTATGACCACTACCATCCAAGAAGAGATATCTCTGGAAATGGGTATTGATCCAAGGAAAGAAACATGGACATATGAGATTATGAATTCTAAAGCAGACCCGTTGTTGGAGGTTAAGGAGAGTCGGAAAGCTATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0009507 GO:0009536 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

307

Amino Acids

33.79

Weight (kDa)

5.34

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfate_transp	PF00916	76 - 237	1.6e-58	Sulfate permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027873)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00892
pyrus_communis	pycom13g17200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	320
AciI	CCGC	2 cut(s)	68, 311
AclWI	GGATC	5 cut(s)	2, 113, 184, 290, 824
AcsI	RAATTY	2 cut(s)	507, 865
AcuI	CTGAAG	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	709
AfaI	GTAC	2 cut(s)	179, 342
AfeI	AGCGCT	1 cut(s)	630
AfiI	CCNNNNNNNGG	4 cut(s)	199, 320, 685, 886
AflII	CTTAAG	1 cut(s)	532
AloI	GAACNNNNNNTCC	2 cut(s)	456, 488
AluBI	AGCT	6 cut(s)	288, 422, 743, 761, 782, 911
AluI	AGCT	6 cut(s)	288, 422, 743, 761, 782, 911
Alw26I	GTCTC	3 cut(s)	95, 269, 676
AlwI	GGATC	5 cut(s)	2, 113, 184, 290, 824
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	194
Aor51HI	AGCGCT	1 cut(s)	630
ApoI	RAATTY	2 cut(s)	507, 865
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	3 cut(s)	244, 478, 721
AsuNHI	GCTAGC	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	205
BauI	CACGAG	1 cut(s)	704
BccI	CCATC	2 cut(s)	472, 803
BceAI	ACGGC	1 cut(s)	93
BcoDI	GTCTC	3 cut(s)	95, 269, 676
BfaI	CTAG	2 cut(s)	33, 419
BfoI	RGCGCY	1 cut(s)	632
BfrI	CTTAAG	1 cut(s)	532
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	2 cut(s)	68, 311
BlsI	GCNGC	2 cut(s)	69, 312
BmcAI	AGTACT	1 cut(s)	179
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	204, 370
BmsI	GCATC	1 cut(s)	158
BmtI	GCTAGC	1 cut(s)	422
BpmI	CTGGAG	2 cut(s)	267, 458
BpuEI	CTTGAG	4 cut(s)	212, 261, 358, 746
BsaJI	CCNNGG	3 cut(s)	297, 523, 833
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 320, 685, 886
Bse1I	ACTGG	2 cut(s)	261, 718
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	297, 523, 833
BseGI	GGATG	2 cut(s)	149, 795
BseLI	CCNNNNNNNGG	4 cut(s)	199, 320, 685, 886
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	261, 718
BseRI	GAGGAG	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	194
BslI	CCNNNNNNNGG	4 cut(s)	199, 320, 685, 886
BsmAI	GTCTC	3 cut(s)	95, 269, 676
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	7 cut(s)	7, 25, 118, 189, 235, 282, 829
BspACI	CCGC	2 cut(s)	68, 311
BspLI	GGNNCC	2 cut(s)	204, 370
BspMI	ACCTGC	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	5 cut(s)	2, 113, 184, 290, 824
BspTI	CTTAAG	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	2 cut(s)	261, 718
BssECI	CCNNGG	3 cut(s)	297, 523, 833
BssMI	GATC	7 cut(s)	7, 25, 118, 189, 235, 282, 829
BssSI	CACGAG	1 cut(s)	704
BssT1I	CCWWGG	3 cut(s)	297, 523, 833
Bst2BI	CACGAG	1 cut(s)	704
Bst4CI	ACNGT	2 cut(s)	400, 607
Bst6I	CTCTTC	1 cut(s)	798
BstAFI	CTTAAG	1 cut(s)	532
BstC8I	GCNNGC	2 cut(s)	420, 520
BstEII	GGTNACC	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	149, 795
BstH2I	RGCGCY	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	7 cut(s)	10, 28, 121, 192, 238, 285, 832
BstMAI	GTCTC	3 cut(s)	95, 269, 676
BstMBI	GATC	7 cut(s)	7, 25, 118, 189, 235, 282, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 299
BstNSI	RCATGY	1 cut(s)	310
BstPI	GGTNACC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	149, 795
BtsIMutI	CAGTG	2 cut(s)	59, 92
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	420, 520
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	178, 341
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	3 cut(s)	307, 566, 846
CviQI	GTAC	2 cut(s)	178, 341
DpnI	GATC	7 cut(s)	9, 27, 120, 191, 237, 284, 831
DpnII	GATC	7 cut(s)	7, 25, 118, 189, 235, 282, 829
DraIII	CACNNNGTG	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco130I	CCWWGG	3 cut(s)	297, 523, 833
Eco24I	GRGCYC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	810
Eco47I	GGWCC	1 cut(s)	392
Eco47III	AGCGCT	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	865
EcoRV	GATATC	1 cut(s)	810
EcoT14I	CCWWGG	3 cut(s)	297, 523, 833
EcoT38I	GRGCYC	1 cut(s)	205
ErhI	CCWWGG	3 cut(s)	297, 523, 833
FaeI	CATG	3 cut(s)	310, 569, 849
FatI	CATG	3 cut(s)	306, 565, 845
FauNDI	CATATG	1 cut(s)	853
Fnu4HI	GCNGC	2 cut(s)	68, 311
FokI	GGATG	2 cut(s)	136, 782
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	2 cut(s)	68, 311
FspBI	CTAG	2 cut(s)	33, 419
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	2 cut(s)	68, 311
GsuI	CTGGAG	2 cut(s)	267, 458
HaeII	RGCGCY	1 cut(s)	632
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	3 cut(s)	310, 569, 849
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HinfI	GANTC	5 cut(s)	52, 249, 610, 731, 901
HphI	GGTGA	3 cut(s)	244, 478, 721
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	7 cut(s)	115, 235, 368, 436, 664, 757, 906
Hpy188III	TCNNGA	4 cut(s)	11, 23, 475, 815
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	400
HpyCH4III	ACNGT	2 cut(s)	400, 607
HpyCH4V	TGCA	7 cut(s)	149, 175, 359, 386, 569, 616, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 299
Hsp92II	CATG	3 cut(s)	310, 569, 849
HspAI	GCGC	1 cut(s)	629
Kzo9I	GATC	7 cut(s)	7, 25, 118, 189, 235, 282, 829
LmnI	GCTCC	1 cut(s)	208
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	2 cut(s)	33, 419
MaeIII	GTNAC	5 cut(s)	90, 209, 221, 250, 709
MalI	GATC	7 cut(s)	9, 27, 120, 191, 237, 284, 831
MboI	GATC	7 cut(s)	7, 25, 118, 189, 235, 282, 829
MboII	GAAGA	3 cut(s)	17, 141, 815
MfeI	CAATTG	2 cut(s)	387, 698
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	9 cut(s)	162, 214, 360, 387, 507, 647, 698, 750, 865
MlyI	GAGTC	3 cut(s)	258, 619, 910
MmeI	TCCRAC	3 cut(s)	414, 867, 884
MseI	TTAA	5 cut(s)	135, 533, 624, 894, 915
MslI	CAYNNNNRTG	2 cut(s)	329, 605
MspCI	CTTAAG	1 cut(s)	532
MunI	CAATTG	2 cut(s)	387, 698
MwoI	GCNNNNNNNGC	2 cut(s)	266, 299
NdeI	CATATG	1 cut(s)	853
NdeII	GATC	7 cut(s)	7, 25, 118, 189, 235, 282, 829
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	3 cut(s)	310, 569, 849
NlaIV	GGNNCC	2 cut(s)	204, 370
NmuCI	GTSAC	3 cut(s)	90, 250, 709
NspI	RCATGY	1 cut(s)	310
PaeR7I	CTCGAG	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	52, 731
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	69, 312
PleI	GAGTC	3 cut(s)	257, 618, 909
PpsI	GAGTC	3 cut(s)	257, 618, 909
PspEI	GGTNACC	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	204, 370
PspPI	GGNCC	1 cut(s)	392
PspXI	VCTCGAGB	1 cut(s)	194
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	2 cut(s)	179, 342
RsaNI	GTAC	2 cut(s)	178, 341
RseI	CAYNNNNRTG	2 cut(s)	329, 605
SaqAI	TTAA	5 cut(s)	135, 533, 624, 894, 915
SatI	GCNGC	2 cut(s)	68, 311
Sau3AI	GATC	7 cut(s)	7, 25, 118, 189, 235, 282, 829
Sau96I	GGNCC	1 cut(s)	392
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	3 cut(s)	258, 619, 910
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	158
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	2 cut(s)	329, 605
SmlI	CTYRAG	6 cut(s)	194, 227, 276, 373, 532, 725
SmoI	CTYRAG	6 cut(s)	194, 227, 276, 373, 532, 725
Sse9I	AATT	9 cut(s)	162, 214, 360, 387, 507, 647, 698, 750, 865
SsiI	CCGC	2 cut(s)	68, 311
SspMI	CTAG	2 cut(s)	33, 419
StyI	CCWWGG	3 cut(s)	297, 523, 833
TaaI	ACNGT	2 cut(s)	400, 607
TaqI	TCGA	2 cut(s)	195, 655
TaqII	GACCGA	2 cut(s)	409, 676
TasI	AATT	9 cut(s)	162, 214, 360, 387, 507, 647, 698, 750, 865
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	2 cut(s)	70, 313
TfiI	GAWTC	2 cut(s)	52, 731
Tru1I	TTAA	5 cut(s)	135, 533, 624, 894, 915
Tru9I	TTAA	5 cut(s)	135, 533, 624, 894, 915
TscAI	CASTG	2 cut(s)	66, 99
TseFI	GTSAC	3 cut(s)	90, 250, 709
Tsp45I	GTSAC	3 cut(s)	90, 250, 709
TspDTI	ATGAA	2 cut(s)	396, 878
TspRI	CASTG	2 cut(s)	66, 99
Van91I	CCANNNNNTGG	1 cut(s)	320
Vha464I	CTTAAG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	392
XapI	RAATTY	2 cut(s)	507, 865
XceI	RCATGY	1 cut(s)	310
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	2 cut(s)	33, 419
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.