FvH4_4g03031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0027880
Physical Location & Seq
Reverse (-)
2712022 .. 2712477
456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03031.t1

Sequence Viewer

Length: 201 bp
ATGGCCAAGAACAGATATTACCCTGACACGAACAGATACAACACCTTGAATCAGCCTAGAGGCCAAAACAGGGGCAGCGCGAACGCAAGTCCCATTAATGCAACAAATAATGACGTAGGCTCTCCCTCTTGGGGAGACCTTAAGCGAGCGCCCCTCCAAAGTGCAATGGAGGTCACTGGCCTAGGACATGGGTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.11

Weight (kDa)

9.81

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027880)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g03031
prunus_persica Prupe.6G338300_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 2 cut(s) 70, 131
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 129
AoxI GGCC 3 cut(s) 3, 61, 178
ApeKI GCWGC 1 cut(s) 75
AseI ATTAAT 1 cut(s) 96
AspA2I CCTAGG 1 cut(s) 181
AspLEI GCGC 2 cut(s) 80, 151
AvrII CCTAGG 1 cut(s) 181
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 2 cut(s) 57, 182
BfoI RGCGCY 1 cut(s) 152
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 76
BlnI CCTAGG 1 cut(s) 181
BlsI GCNGC 1 cut(s) 77
BoxI GACNNNNGTC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 131
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 70, 131
BseMI GCAATG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 3 cut(s) 5, 63, 180
BslFI GGGAC 1 cut(s) 75
BslI CCNNNNNNNGG 2 cut(s) 70, 131
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 75
BsnI GGCC 3 cut(s) 5, 63, 180
Bso31I GGTCTC 1 cut(s) 129
BspANI GGCC 3 cut(s) 5, 63, 180
BspFNI CGCG 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 181
BstAFI CTTAAG 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 147
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 2 cut(s) 80, 151
BstMAI GTCTC 1 cut(s) 129
BstPAI GACNNNNGTC 1 cut(s) 190
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 87
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 3 cut(s) 5, 63, 180
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 2 cut(s) 80, 151
CviAII CATG 1 cut(s) 188
CviJI RGCY 5 cut(s) 5, 55, 63, 120, 180
CviKI_1 RGCY 5 cut(s) 5, 55, 63, 120, 180
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 1 cut(s) 191
FaiI YATR 1 cut(s) 189
FaqI GGGAC 1 cut(s) 75
FatI CATG 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 2 cut(s) 57, 182
GlaI GCGC 2 cut(s) 79, 150
GluI GCNGC 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 3 cut(s) 5, 63, 180
HhaI GCGC 2 cut(s) 80, 151
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 2 cut(s) 78, 149
HinP1I GCGC 2 cut(s) 78, 149
HinfI GANTC 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 101, 164
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 2 cut(s) 78, 149
LpnPI CCDG 3 cut(s) 36, 55, 162
Lsp1109I GCAGC 1 cut(s) 87
MaeI CTAG 2 cut(s) 57, 182
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 53, 136, 163, 164
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 96, 141
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 140
MvnI CGCG 1 cut(s) 80
NlaIII CATG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 77
PshAI GACNNNNGTC 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 96
PsrI GAACNNNNNNTAC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 96, 141
SatI GCNGC 1 cut(s) 76
SetI ASST 4 cut(s) 47, 117, 141, 174
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SspMI CTAG 2 cut(s) 57, 182
StyI CCWWGG 1 cut(s) 181
TaiI ACGT 1 cut(s) 117
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 2 cut(s) 96, 141
Tru9I TTAA 2 cut(s) 96, 141
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 75
Tsp45I GTSAC 1 cut(s) 172
TspRI CASTG 1 cut(s) 181
Vha464I CTTAAG 1 cut(s) 140
VspI ATTAAT 1 cut(s) 96
XmaJI CCTAGG 1 cut(s) 181
XspI CTAG 2 cut(s) 57, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.