Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0027904

Physical Location & Seq

Genomic Coordinates Forward (+)

12257637 .. 12259273

Gene Structure 1637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCTGATGACAATAATTCCCAGCCGTACGGTTGCCGTCGGCCTTCAGTTTGGTTGGGCTTTGCAGATTTCTGCTAATCCTTTTGTACTTTTGCTTTGTGAATCAGTTGCAGAGCAGCAGAAGCGGAATGAATCAAAACCAAATAAAGGTACTCCGAGATCTCTCCATGAATATCCATATCTTCAAGACCACTCCAGTATTCGGCCTGATGTATATGGACATGTTGCTCAATCTCATTTTCATGATTCAGCAATTGATGGTCCAAATGCAAGAAATTCACCCTTTGCAAGTGGAAATGAACAGTTGCCAAGGGTTCATGGTGGCCACGGTCGGGCTCGTCTTCTGTCACAACAGGAGAGGCAAGCAGTGGCCTTTGCATCTCCTGGTGATGATGGCTTACCTCAAAGGGACGCCTTTATCAATGGTAGAATGAGTACTCAATATAGTGAACCCGCTTTTATTGCACCTGAAAGCTCTAATGTGTTGTCTGATGGTCAAATTAATGACACTATGCTGAGAATGGAGGGGAAACACAAGGGTGAAGATGTCAGAATGGCTAAAGAAGTAGAAGCTCATGAAGCTCGAATCCGGAAGGAGATGGAGAAACAAGATATTCTGAGGAGAAAGAATGAGGAAAGAATCAGGAGAGAAATGGAAAGGCAAGACCGTGAAAGGAGAAAGGAGGAAGAGAGATTGATGCGTGAAAGGCAGCGAGAGGAAGAGAGATCAAAGGAGCAAAAATGTGAAAACGAACGAAGGGAGAAGTTTTTGCAGAAAGAAAATATAAGAGTAAGTATGGGATCTGCTAATGTAGCCATTTGTTTCATAGCAGAAAAATTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

282

Amino Acids

32.46

Weight (kDa)

8.4

Isoelectric Point (pI)

62.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027904)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g09960
pyrus_communis	pycom17g15420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	588
AciI	CCGC	2 cut(s)	124, 453
AclWI	GGATC	1 cut(s)	808
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	274, 836
AcuI	CTGAAG	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	411
AfaI	GTAC	4 cut(s)	28, 87, 151, 436
AfiI	CCNNNNNNNGG	3 cut(s)	146, 201, 331
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	382
AleI	CACNNNNGTG	1 cut(s)	537
AluBI	AGCT	3 cut(s)	474, 572, 581
AluI	AGCT	3 cut(s)	474, 572, 581
AlwI	GGATC	1 cut(s)	808
Aor13HI	TCCGGA	1 cut(s)	588
AoxI	GGCC	4 cut(s)	40, 203, 322, 369
ApeKI	GCWGC	2 cut(s)	115, 709
ApoI	RAATTY	2 cut(s)	274, 836
AseI	ATTAAT	1 cut(s)	501
Asp700I	GAANNNNTTC	1 cut(s)	837
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	270, 398, 551
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	127, 721
BccI	CCATC	4 cut(s)	251, 386, 485, 592
BceAI	ACGGC	2 cut(s)	9, 20
BciT130I	CCWGG	1 cut(s)	384
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	2 cut(s)	116, 710
BlsI	GCNGC	2 cut(s)	117, 711
BmcAI	AGTACT	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	386, 687
BpiI	GAAGAC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	178
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	308, 325
BsaWI	WCCGGW	1 cut(s)	588
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 201, 331
Bse1I	ACTGG	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	308, 325
BseLI	CCNNNNNNNGG	3 cut(s)	146, 201, 331
BseMII	CTCAG	2 cut(s)	506, 608
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	634
BseXI	GCAGC	2 cut(s)	127, 721
BseYI	CCCAGC	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	4 cut(s)	42, 205, 324, 371
BsiEI	CGRYCG	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	589
BsiWI	CGTACG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	3 cut(s)	146, 201, 331
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	4 cut(s)	42, 205, 324, 371
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp13I	TCCGGA	1 cut(s)	588
Bsp143I	GATC	3 cut(s)	158, 725, 800
BspACI	CCGC	2 cut(s)	124, 453
BspANI	GGCC	4 cut(s)	42, 205, 324, 371
BspCNI	CTCAG	2 cut(s)	507, 609
BspEI	TCCGGA	1 cut(s)	588
BspHI	TCATGA	2 cut(s)	241, 574
BspPI	GGATC	1 cut(s)	808
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	308, 325
BssMI	GATC	3 cut(s)	158, 725, 800
BssNI	GRCGYC	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	4 cut(s)	31, 303, 329, 668
Bst6I	CTCTTC	2 cut(s)	681, 714
BstACI	GRCGYC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	515, 617
BstDSI	CCRYGG	1 cut(s)	325
BstKTI	GATC	3 cut(s)	161, 728, 803
BstMBI	GATC	3 cut(s)	158, 725, 800
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 461, 578, 706, 812
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	127, 721
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	2 cut(s)	158, 800
BstYI	RGATCY	2 cut(s)	158, 800
BsuRI	GGCC	4 cut(s)	42, 205, 324, 371
BtgI	CCRYGG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	363
CciI	TCATGA	2 cut(s)	241, 574
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	4 cut(s)	27, 86, 150, 435
CviAII	CATG	5 cut(s)	167, 221, 242, 317, 575
CviQI	GTAC	4 cut(s)	27, 86, 150, 435
DdeI	CTNAG	2 cut(s)	515, 617
DpnI	GATC	3 cut(s)	160, 727, 802
DpnII	GATC	3 cut(s)	158, 725, 800
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	681, 714
EarI	CTCTTC	2 cut(s)	681, 714
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	5 cut(s)	170, 224, 245, 320, 578
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	5 cut(s)	166, 220, 241, 316, 574
FauI	CCCGC	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	116, 710
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	116, 710
GluI	GCNGC	2 cut(s)	116, 710
GsaI	CCCAGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	4 cut(s)	42, 205, 324, 371
HapII	CCGG	1 cut(s)	589
HgaI	GACGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	5 cut(s)	170, 224, 245, 320, 578
HinfI	GANTC	5 cut(s)	101, 131, 245, 585, 639
HpaII	CCGG	1 cut(s)	589
HphI	GGTGA	3 cut(s)	270, 398, 551
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	4 cut(s)	156, 490, 551, 618
Hpy188III	TCNNGA	5 cut(s)	185, 242, 575, 589, 643
Hpy8I	GTNNAC	1 cut(s)	449
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	53, 586, 750
HpyCH4III	ACNGT	4 cut(s)	31, 303, 329, 668
HpyCH4V	TGCA	7 cut(s)	64, 110, 269, 287, 377, 464, 772
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 461, 578, 706, 812
HpyF3I	CTNAG	2 cut(s)	515, 617
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	5 cut(s)	170, 224, 245, 320, 578
Kpn2I	TCCGGA	1 cut(s)	588
Kzo9I	GATC	3 cut(s)	158, 725, 800
LmnI	GCTCC	1 cut(s)	733
LpnPI	CCDG	9 cut(s)	34, 208, 219, 338, 369, 396, 480, 602, 628
Lsp1109I	GCAGC	2 cut(s)	127, 721
LweI	GCATC	2 cut(s)	386, 687
MaeIII	GTNAC	1 cut(s)	345
MalI	GATC	3 cut(s)	160, 727, 802
MboI	GATC	3 cut(s)	158, 725, 800
MboII	GAAGA	5 cut(s)	173, 332, 554, 698, 731
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	2 cut(s)	158, 800
MhlI	GDGCHC	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	5 cut(s)	15, 252, 274, 498, 836
MluNI	TGGCCA	1 cut(s)	324
MnlI	CCTC	7 cut(s)	351, 411, 517, 612, 625, 676, 709
Mox20I	TGGCCA	1 cut(s)	324
MroI	TCCGGA	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	2 cut(s)	240, 537
Msp20I	TGGCCA	1 cut(s)	324
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	5 cut(s)	121, 461, 578, 706, 812
NdeII	GATC	3 cut(s)	158, 725, 800
NlaIII	CATG	5 cut(s)	170, 224, 245, 320, 578
NmuCI	GTSAC	1 cut(s)	345
NspI	RCATGY	1 cut(s)	224
OliI	CACNNNNGTG	1 cut(s)	537
PagI	TCATGA	2 cut(s)	241, 574
PciI	ACATGT	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	837
PfeI	GAWTC	5 cut(s)	101, 131, 245, 585, 639
Pfl23II	CGTACG	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	117, 711
PscI	ACATGT	1 cut(s)	220
PshBI	ATTAAT	1 cut(s)	501
Psp6I	CCWGG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	382
PspLI	CGTACG	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	158, 800
RsaI	GTAC	4 cut(s)	28, 87, 151, 436
RsaNI	GTAC	4 cut(s)	27, 86, 150, 435
RseI	CAYNNNNRTG	2 cut(s)	240, 537
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	2 cut(s)	116, 710
Sau3AI	GATC	3 cut(s)	158, 725, 800
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	6 cut(s)	151, 403, 469, 476, 574, 583
SfaNI	GCATC	2 cut(s)	386, 687
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	240, 537
Sse9I	AATT	5 cut(s)	15, 252, 274, 498, 836
SsiI	CCGC	2 cut(s)	124, 453
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	4 cut(s)	31, 303, 329, 668
TaqI	TCGA	1 cut(s)	583
TasI	AATT	5 cut(s)	15, 252, 274, 498, 836
TatI	WGTACW	2 cut(s)	85, 434
TfiI	GAWTC	5 cut(s)	101, 131, 245, 585, 639
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	2 cut(s)	115, 709
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	7 cut(s)	144, 183, 230, 305, 312, 591, 814
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	2 cut(s)	274, 836
XceI	RCATGY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	837
ZrmI	AGTACT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.