Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0027930

Physical Location & Seq

Genomic Coordinates Forward (+)

24007926 .. 24008974

Gene Structure 1049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20851.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCTGTTGTTAAGATTTCTCTATCAATGATCGATCATCTTTCTTTTAGCCAACTTTTTCAACCTTGCGCCTATTTATATGTGTGCAGGGTATGCATGTGGAAAGCAGTATTGTTGTTCCTGTTGGCTATATTAGGGGCTTGCTCTATTATAAACAGATTCACTCGTCTTGCTGGAGAGTTATTTGGCCTTCTTATTGCAATGCTCTTCATGCAGGAAGCTATCAAAGGACTTGTTGAGGAGTTTCGCATACCTGAAAGAGAAAACCCAAATTCAATTCAGTTTCAACCTTCATGGAGATTTGCAAATGGGATGTTTGCTCTGGTCCTGTCATTTGGTCTTCTACTCACTTCGTTGAAGAGCAGAAAAGCAAGGTCTTGGCGATATGGGTCTGGGTCACTGCGAGGTTTTATAGCAGATTACGGTGTACAATTGATGGTATTGATCTGGTCCGCCATTTCCAATATACCAACTGGAAGTGGAAGTGTTCCAAAAGAACTTCCAAGGCGCCTCTTCAGTCCAAATCCATGGTCATCAGGAGCTTACGAGAATTGGACTGTCATCAAGGACATGCTAGATGTGCCAGTGCTTTATATAATTGGAGCATTCATTCCGGCAACAATGATCGTGGTGCTCTACTATTTTGACTACAGTGTAGCTTCTCAACTGGCTCAGCAGAAAGAATTTAATTTGAGAAAAGCCACCTTCTTTCCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0008509 GO:0009987 GO:0010036 GO:0012505 GO:0015075 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098656 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

240

Amino Acids

27.07

Weight (kDa)

9.46

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HCO3_cotransp	PF00955	29 - 83	8e-07	HCO3- transporter integral membrane domain
HCO3_cotransp	PF00955	104 - 237	3.7e-09	HCO3- transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20851
pyrus_communis	pycom17g27790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	507
AciI	CCGC	1 cut(s)	453
AcsI	RAATTY	2 cut(s)	271, 683
AcuI	CTGAAG	1 cut(s)	499
AcyI	GRCGYC	1 cut(s)	508
AfaI	GTAC	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	62, 276, 287, 358
AluBI	AGCT	3 cut(s)	221, 542, 659
AluI	AGCT	3 cut(s)	221, 542, 659
Alw21I	GWGCWC	1 cut(s)	636
AoxI	GGCC	1 cut(s)	187
ApoI	RAATTY	2 cut(s)	271, 683
ArsI	GACNNNNNNTTYG	2 cut(s)	515, 547
AspLEI	GCGC	2 cut(s)	71, 510
AspS9I	GGNCC	2 cut(s)	325, 450
AvaII	GGWCC	2 cut(s)	325, 450
BanI	GGYRCC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	636
BccI	CCATC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	575
BfmI	CTRYAG	1 cut(s)	649
BfoI	RGCGCY	1 cut(s)	511
BlpI	GCTNAGC	1 cut(s)	672
Bme18I	GGWCC	2 cut(s)	325, 450
BmgT120I	GGNCC	2 cut(s)	325, 450
BmiI	GGNNCC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	508
BsaJI	CCNNGG	2 cut(s)	503, 527
Bse1I	ACTGG	3 cut(s)	478, 584, 672
Bse3DI	GCAATG	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	503, 527
BseGI	GGATG	1 cut(s)	318
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	686
BseNI	ACTGG	3 cut(s)	478, 584, 672
BseRI	GAGGAG	1 cut(s)	254
BsgI	GTGCAG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	507
BshVI	ATCGAT	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	4 cut(s)	30, 34, 444, 624
Bsp1720I	GCTNAGC	1 cut(s)	672
Bsp19I	CCATGG	1 cut(s)	527
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	685
BspDI	ATCGAT	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	509
BspQI	GCTCTTC	2 cut(s)	212, 353
BspT107I	GGYRCC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	207
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	3 cut(s)	478, 584, 672
BssECI	CCNNGG	2 cut(s)	503, 527
BssMI	GATC	4 cut(s)	30, 34, 444, 624
BssNI	GRCGYC	1 cut(s)	508
BssT1I	CCWWGG	2 cut(s)	503, 527
Bst4CI	ACNGT	3 cut(s)	425, 559, 653
Bst6I	CTCTTC	3 cut(s)	212, 353, 518
BstACI	GRCGYC	1 cut(s)	508
BstAPI	GCANNNNNTGC	1 cut(s)	93
BstAUI	TGTACA	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	672
BstDSI	CCRYGG	1 cut(s)	527
BstF5I	GGATG	1 cut(s)	318
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	2 cut(s)	71, 510
BstKTI	GATC	4 cut(s)	33, 37, 447, 627
BstMBI	GATC	4 cut(s)	30, 34, 444, 624
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 211, 580
BstNSI	RCATGY	2 cut(s)	100, 574
BstSFI	CTRYAG	1 cut(s)	649
BstV2I	GAAGAC	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	528
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	527
BtsCI	GGATG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	3 cut(s)	398, 591, 658
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	2 cut(s)	71, 510
Cfr13I	GGNCC	2 cut(s)	325, 450
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	428
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	5 cut(s)	97, 211, 294, 528, 571
CviJI	RGCY	9 cut(s)	51, 128, 140, 189, 221, 542, 659, 671, 701
CviKI_1	RGCY	9 cut(s)	51, 128, 140, 189, 221, 542, 659, 671, 701
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	1 cut(s)	672
DinI	GGCGCC	1 cut(s)	509
DpnI	GATC	4 cut(s)	32, 36, 446, 626
DpnII	GATC	4 cut(s)	30, 34, 444, 624
Eam1104I	CTCTTC	3 cut(s)	212, 353, 518
EarI	CTCTTC	3 cut(s)	212, 353, 518
EciI	GGCGGA	1 cut(s)	442
Eco130I	CCWWGG	2 cut(s)	503, 527
Eco47I	GGWCC	2 cut(s)	325, 450
Eco57I	CTGAAG	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	503, 527
EcoT22I	ATGCAT	1 cut(s)	98
EgeI	GGCGCC	1 cut(s)	509
EheI	GGCGCC	1 cut(s)	509
ErhI	CCWWGG	2 cut(s)	503, 527
FaeI	CATG	5 cut(s)	100, 214, 297, 531, 574
FatI	CATG	5 cut(s)	96, 210, 293, 527, 570
FokI	GGATG	1 cut(s)	325
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	2 cut(s)	70, 509
GsuI	CTGGAG	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	614
HhaI	GCGC	2 cut(s)	71, 510
Hin1I	GRCGYC	1 cut(s)	508
Hin1II	CATG	5 cut(s)	100, 214, 297, 531, 574
Hin6I	GCGC	2 cut(s)	69, 508
HinP1I	GCGC	2 cut(s)	69, 508
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	1 cut(s)	614
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188III	TCNNGA	1 cut(s)	537
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	3 cut(s)	200, 300, 715
HpyCH4III	ACNGT	3 cut(s)	425, 559, 653
HpyCH4V	TGCA	5 cut(s)	87, 96, 200, 214, 305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 211, 580
HpyF3I	CTNAG	1 cut(s)	672
Hsp92I	GRCGYC	1 cut(s)	508
Hsp92II	CATG	5 cut(s)	100, 214, 297, 531, 574
HspAI	GCGC	2 cut(s)	69, 508
KasI	GGCGCC	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	30, 34, 444, 624
LguI	GCTCTTC	2 cut(s)	212, 353
LmnI	GCTCC	2 cut(s)	539, 602
MaeI	CTAG	1 cut(s)	575
MaeIII	GTNAC	1 cut(s)	396
MalI	GATC	4 cut(s)	32, 36, 446, 626
MboI	GATC	4 cut(s)	30, 34, 444, 624
MboII	GAAGA	4 cut(s)	199, 332, 370, 505
MfeI	CAATTG	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	7 cut(s)	271, 276, 431, 550, 597, 683, 688
Mly113I	GGCGCC	1 cut(s)	508
MnlI	CCTC	3 cut(s)	232, 398, 521
Mph1103I	ATGCAT	1 cut(s)	98
MseI	TTAA	2 cut(s)	12, 687
MspI	CCGG	1 cut(s)	614
MunI	CAATTG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	605
MwoI	GCNNNNNNNGC	3 cut(s)	93, 211, 580
NarI	GGCGCC	1 cut(s)	508
NcoI	CCATGG	1 cut(s)	527
NdeII	GATC	4 cut(s)	30, 34, 444, 624
NlaIII	CATG	5 cut(s)	100, 214, 297, 531, 574
NlaIV	GGNNCC	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	396
NsiI	ATGCAT	1 cut(s)	98
NspI	RCATGY	2 cut(s)	100, 574
PciSI	GCTCTTC	2 cut(s)	212, 353
PctI	GAATGC	1 cut(s)	605
PfeI	GAWTC	1 cut(s)	159
PluTI	GGCGCC	1 cut(s)	511
PsiI	TTATAA	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	509
PspPI	GGNCC	2 cut(s)	325, 450
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SapI	GCTCTTC	2 cut(s)	212, 353
SaqAI	TTAA	2 cut(s)	12, 687
Sau3AI	GATC	4 cut(s)	30, 34, 444, 624
Sau96I	GGNCC	2 cut(s)	325, 450
SduI	GDGCHC	1 cut(s)	636
SetI	ASST	9 cut(s)	67, 223, 256, 292, 377, 409, 544, 661, 707
SfcI	CTRYAG	1 cut(s)	649
SfoI	GGCGCC	1 cut(s)	509
SinI	GGWCC	2 cut(s)	325, 450
Sse9I	AATT	7 cut(s)	271, 276, 431, 550, 597, 683, 688
SsiI	CCGC	1 cut(s)	453
SspDI	GGCGCC	1 cut(s)	507
SspMI	CTAG	1 cut(s)	575
StyI	CCWWGG	2 cut(s)	503, 527
TaaI	ACNGT	3 cut(s)	425, 559, 653
TaqI	TCGA	1 cut(s)	33
TasI	AATT	7 cut(s)	271, 276, 431, 550, 597, 683, 688
TatI	WGTACW	1 cut(s)	427
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	2 cut(s)	12, 687
Tru9I	TTAA	2 cut(s)	12, 687
TscAI	CASTG	3 cut(s)	405, 591, 658
TseFI	GTSAC	1 cut(s)	396
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	3 cut(s)	199, 282, 598
TspRI	CASTG	3 cut(s)	405, 591, 658
VpaK11BI	GGWCC	2 cut(s)	325, 450
XapI	RAATTY	2 cut(s)	271, 683
XceI	RCATGY	2 cut(s)	100, 574
XspI	CTAG	1 cut(s)	575
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.